mRNA_M-pyrifera_M_contig13076.5842.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13076.5842.1
Unique NamemRNA_M-pyrifera_M_contig13076.5842.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: D7FSQ5_ECTSI (Pyridoxal-dependent decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ5_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 4.500e-28
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 2 
Query:    2 CLHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDENSTAAIYGMASSMPAGPVNVLLRTYTDVTLGS 208
            CLHLCVT+CHV K G FL DL +STLEAAA  G GDENSTAAIYGMASSMPAGPVNVLLRTYTDVTLGS
Sbjct:  533 CLHLCVTMCHVGKAGVFLADLLASTLEAAAAAGEGDENSTAAIYGMASSMPAGPVNVLLRTYTDVTLGS 601
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BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: A0A6H5JHB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.390e-19
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 2 
Query:    2 CLHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDENSTAAIYGMASSMPAGPVNVLL 178
            CLHLCVT+CHV K G FL DL +STLEAAA  G GDENSTAAIYGMASSMPAGP N ++
Sbjct:  360 CLHLCVTMCHVGKAGVFLEDLLASTLEAAAAAGEGDENSTAAIYGMASSMPAGPENSVI 418
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BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: A0A0P1AR24_PLAHL (Sphingosine-1-phosphate lyase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AR24_PLAHL)

HSP 1 Score: 68.9 bits (167), Expect = 6.870e-11
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:    2 CLHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDENSTAAIYGMASSMPAGPVNVLLRTYTDVTL 202
            C+HLCVTVCH+ K  +FL  L  +  E         E  +A IYGMASS+PAGPV+ LLR YTD+TL
Sbjct:  540 CVHLCVTVCHIGKANKFLSALKEAVNEVKQDPNPSPEGGSA-IYGMASSLPAGPVDDLLRIYTDITL 605
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BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: A0A7S3GRY3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRY3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.240e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:    2 CLHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDE-NSTAAIYGMASSMPAGPVNVLLRTYTDVTL 202
            C+H+C TV HV +G +FL DL +S  E   +  N D    TAAIYG+ S++PAGPVN LL+ Y DV L
Sbjct:  557 CVHICCTVAHVGRGEQFLADLRASVQE---VLDNPDAVGGTAAIYGLTSALPAGPVNELLKVYNDVVL 621
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BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: A0A2D4C962_PYTIN (Sphingosine-1-phosphate lyase, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C962_PYTIN)

HSP 1 Score: 66.2 bits (160), Expect = 6.000e-10
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 2 
Query:    5 LHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDENST----AAIYGMASSMPAGPVNVLLRTYTDVTL 202
            +H+CVTV H+ KG +FL+DL     E A  T   D N      +AIYGMASSMPAGPV+ +LR YTDVTL
Sbjct:  550 VHICVTVRHIGKGKKFLQDL-----EDAVATVKKDPNGALEGGSAIYGMASSMPAGPVDDILRIYTDVTL 614
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BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: K3WGG0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGG0_GLOUD)

HSP 1 Score: 64.7 bits (156), Expect = 2.060e-9
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:    5 LHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDENSTAAIYGMASSMPAGPVNVLLRTYTDVTL 202
            +HLCVTV H+ K  +FL++L  + ++      NG     +AIYGMASSMPAGPV+ +LR YTDVTL
Sbjct:  540 VHLCVTVRHIGKAKKFLKELQEA-VDVVKQDPNGALEGGSAIYGMASSMPAGPVDDILRIYTDVTL 604
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BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: A0A024GNG5_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNG5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.210e-9
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:    5 LHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDENST----AAIYGMASSMPAGPVNVLLRTYTDVTL 202
            LH+CVT+CH+     FLRDL     E A IT   D +      +AIYGMASSMPAGPV+ +LR YT++TL
Sbjct:  544 LHICVTMCHLRAAKNFLRDL-----EEAVITVKKDPDGAIKGGSAIYGMASSMPAGPVDDILRIYTNLTL 608
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BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: A0A8K1C4Q6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4Q6_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 9.660e-9
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:    5 LHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDENSTAAIYGMASSMPAGPVNVLLRTYTDVTL 202
            +H+CVTV  + K  +FL DL +S ++      NG     +AIYGMASSMPAGPV+ +LR YTDVTL
Sbjct:  542 VHMCVTVRQIGKAKKFLSDLETS-VKTVKSDPNGALEGGSAIYGMASSMPAGPVDDILRIYTDVTL 606
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BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: F0W224_9STRA (Uncharacterized protein ALNC14_012460 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W224_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.670e-9
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    5 LHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDENSTAAIYGMASSMPAGPVNVLLRTYTDVTLGS 208
            LH+CVT+CH+    +FL+DL  + +       +G     +AIYGMASSMPAGPV+ +LR YT++TL S
Sbjct:  544 LHICVTMCHLGASKKFLKDLEEAVVNVKKDP-HGAMKGGSAIYGMASSMPAGPVDDVLRIYTNLTLES 610
[Close]
BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Match: A0A662WN98_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN98_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.320e-8
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 2 
Query:    5 LHLCVTVCHVDKGGEFLRDLASSTLEAAAITGNGDENSTAAIYGMASSMPAGPVNVLLRTYTDVTL 202
            +HLCVTV H+ K  +FL  L  + LE         E  +A IYGMASS+PAGPV+ +LR YTD+TL
Sbjct:  544 VHLCVTVRHIGKAKKFLSALEDAVLEVKQDPNPSPEGGSA-IYGMASSLPAGPVDDILRIYTDITL 608
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13076.5842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ5_ECTSI4.500e-2885.51Pyridoxal-dependent decarboxylase n=1 Tax=Ectocarp... [more]
A0A6H5JHB1_9PHAE5.390e-1976.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1AR24_PLAHL6.870e-1153.73Sphingosine-1-phosphate lyase n=1 Tax=Plasmopara h... [more]
A0A7S3GRY3_9STRA3.240e-1051.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2D4C962_PYTIN6.000e-1055.71Sphingosine-1-phosphate lyase, putative n=2 Tax=Py... [more]
K3WGG0_GLOUD2.060e-953.03Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024GNG5_9STRA5.210e-952.86Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8K1C4Q6_PYTOL9.660e-953.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0W224_9STRA9.670e-948.53Uncharacterized protein ALNC14_012460 n=1 Tax=Albu... [more]
A0A662WN98_9STRA1.320e-851.52Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13076contigM-pyrifera_M_contig13076:558..2459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13076.5842.1prot_M-pyrifera_M_contig13076.5842.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13076 751..2459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.3020356-UTR-M-pyrifera_M_contig13076:557..7501622815807.3020356-UTR-M-pyrifera_M_contig13076:557..750Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13076 558..750 -
1692277579.6779957-UTR-M-pyrifera_M_contig13076:557..7501692277579.6779957-UTR-M-pyrifera_M_contig13076:557..750Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13076 558..750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.3125095-CDS-M-pyrifera_M_contig13076:750..8781622815807.3125095-CDS-M-pyrifera_M_contig13076:750..878Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13076 751..878 -
1692277579.6910777-CDS-M-pyrifera_M_contig13076:750..8781692277579.6910777-CDS-M-pyrifera_M_contig13076:750..878Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13076 751..878 -
1622815807.3241656-CDS-M-pyrifera_M_contig13076:2356..24591622815807.3241656-CDS-M-pyrifera_M_contig13076:2356..2459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13076 2357..2459 -
1692277579.7058349-CDS-M-pyrifera_M_contig13076:2356..24591692277579.7058349-CDS-M-pyrifera_M_contig13076:2356..2459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13076 2357..2459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13076.5842.1

>prot_M-pyrifera_M_contig13076.5842.1 ID=prot_M-pyrifera_M_contig13076.5842.1|Name=mRNA_M-pyrifera_M_contig13076.5842.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MPAPLRDRVSRRQRGGVPQRSGVFHAGGGSHNRKWRRKQHGGDLRYGLLH
AGGSGERASQDLHGRYTRLVRWQPVL*
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mRNA from alignment at M-pyrifera_M_contig13076:558..2459-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13076.5842.1 ID=mRNA_M-pyrifera_M_contig13076.5842.1|Name=mRNA_M-pyrifera_M_contig13076.5842.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1902bp|location=Sequence derived from alignment at M-pyrifera_M_contig13076:558..2459- (Macrocystis pyrifera P11B4 male)
ATGCCTGCACCTCTGCGTGACCGTGTGTCACGTCGACAAAGGGGGGGAGT
TCCTCAGAGATCTGGCGTCTTCCACGCTGGAGGCGGCAGCCATAACCGGA
AATGTGAACACAGTACGGTTTTACACTGTGTCGCTGAGACATTAAAATTG
TTTTTTAGTTCTGCGGATGTCTCCCCAACTGACGTGCTGTAAAACATTCG
AACCATTGTGCGTACGACAGCTGCATTAACTCGTCATTGTATTGGTTCGG
CGTTTTTTTGCAGGTTTTTCTTCCCCACGTGCATTCAGTAGGCTCTTTCT
CGCTCCTACGCCTCGTCTTGTGCTATCCGCTCCTACGCCTCGTCTTGTGC
TATCCGGTACGTTTCGTTGTATACGCTGATGAAGCAGACACACAGCAAGT
GTGCGCTACCGCAGACATACATGGCACTATTCTGCAGAGCTACATATGTG
CTATTACTGTTTATCTGTCGATGGCGGGATGGGGAAATAATCAAGGCGGA
CACCCCGTTTACCGCTGGGCGAAACGCAGACATAGTGTTACATTACAAGG
GACTATAGTACGGCAATCAGAGCCCATGACGGACCAAACAATCATGTCCC
GCTACAGTACATACCTGGTATGTTTATACACAGTAGTTGTTGGTTCTGAT
TAGTACTGTATGTTCCGCTCTACGGCAAGACGTACCAGGTACCAGGTATA
CCCGACGTGTTGTATGTACCGTAGCGTAGGGGGTAGCACGTGCAGTTTAG
TTTATAGTTTTCATCTCCTCGCTGCAGGAGCTCTGGGCCTCAGCCAGCAC
CCTTGTTTTGTAACCTAAGGCCAAGTCAGGCACACAATCCCATGGACTAG
GGATCTCTTACGCGGAACACTGTAAAATACTCATCCCACGGGAGGGGCTA
AGTTTTTTCGGTTCAGCATTTTCCGACCGACCGGTCGAGCTCCTGCAGTA
GCCCCTCAAGCAATGAACTATCGGATGCTGTGAAAATTTTACTCGCACAC
CAGTACCTGGTGTTTGCTTCAGGGCTATATGGCGCGTTGAAATGTTGGTC
GCCATGTTTGCTCGATTCAATCTTGTTCGAAGTGCCTCGGTAGGCGTATC
GGGCTCCTCATGTGTGGAGCTCAGAAAAGAAGACACCACTCGTGCATACC
ATGACGTTGCCTCCACAGAGGAAAAACCGCGTCGGATCAAAATACACACT
GGTTGGGTAGCTGGTCAGGTGCGATGGTTGAAAATGATCAATGGTTGGTG
GGCTCCCAAAGGGCAAAACCCTTAATTGCAACCCCCACCGTCCCACCGCG
CTGTCGCCACGTGCCGACAGCCCATGCAGCATTTGCCCTTCTCCTAAGAA
ACGTGAAATCGCATCACATCAGACGTTGCTGCACGCTATCATAACATCGT
CATTCTGGCGGAGCGAGAAAGGGGTACATTTTTTCACAAATTTCTCCATA
GACGGCGAGCGCCCAAACAGGCTATACAGGCTTTCTTATTTTTTTACATT
TTTCTTCTCTAGGATTTTTTTTTAAGTCTGGTTTTCTACGAGAGGGCCGA
TCCTCCACTCCACCCGCGCGTCCATTGGCAGGGAGACGAAAACAGCACGG
CGGCGATCTACGGTATGGCCTCCTCCATGCCGGCGGGTCCGGTGAACGTG
CTTCTCAGGACCTACACGGACGTTACACTCGGCTCGTAAGGTGGCAGCCT
GTTTTGTGACACCGTCGCATTACCCAGTGTTCGAACGCCGGCGGAGAGAA
AGGAAGCGGCGCTCAGAATACAGTCCTGCGCCTCCGCGGAGCCTAAGAAC
AGTGACAGCTTACCTTCAAAAAGTGGAGTTTTTATAGAATACCGGGGTAG
TTCTTGGGTGATAGGGGCCGCATGGTTTGATATGTACCCCAGACGGTAAA
TC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13076:558..2459-

>mRNA_M-pyrifera_M_contig13076.5842.1 ID=mRNA_M-pyrifera_M_contig13076.5842.1|Name=mRNA_M-pyrifera_M_contig13076.5842.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig13076:558..2459- (Macrocystis pyrifera P11B4 male)
ATGCCTGCACCTCTGCGTGACCGTGTGTCACGTCGACAAAGGGGGGGAGT
TCCTCAGAGATCTGGCGTCTTCCACGCTGGAGGCGGCAGCCATAACCGGA
AATATGCCTGCACCTCTGCGTGACCGTGTGTCACGTCGACAAAGGGGGGG
AGTTCCTCAGAGATCTGGCGTCTTCCACGCTGGAGGCGGCAGCCATAACC
GGAAATGGAGACGAAAACAGCACGGCGGCGATCTACGGTATGGCCTCCTC
CATGCCGGCGGGTCCGGTGAACGTGCTTCTCAGGACCTACACGGACGTTA
CACTCGGCTCGTAAGGTGGCAGCCTGTTTTGTGAGGAGACGAAAACAGCA
CGGCGGCGATCTACGGTATGGCCTCCTCCATGCCGGCGGGTCCGGTGAAC
GTGCTTCTCAGGACCTACACGGACGTTACACTCGGCTCGTAAGGTGGCAG
CCTGTTTTGTGA
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