mRNA_M-pyrifera_M_contig13043.5825.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13043.5825.1
Unique NamemRNA_M-pyrifera_M_contig13043.5825.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13043.5825.1 vs. uniprot
Match: D7FQK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK9_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 7.590e-70
Identity = 104/149 (69.80%), Postives = 122/149 (81.88%), Query Frame = 1 
Query:    1 RILSGSFIVLLLPLFWNAAADGHPVITPITSLGNGSSWNFGWARPIAHFALAFIGSFLDFHPAARLSCLVGMAQAVGFDTLSSYDLGTQIECVASGNCAMPENYSLWGLRLLNARDLASIVLATWALLLIVYLTAIIGVCRTRYRFRQL 447
            R LSG+FI+LL PLFW AA++  PVITPITS GNGSSWN+GW RP+ HF L F+G F+D H AARLSCLVGM QA+  DTLSSY LGTQI+CV SG CA+PE+ +L GLRLL +RDLAS+ LATWALLL  YL+ +IG+CRTRY FRQL
Sbjct:   29 RCLSGAFILLLFPLFWVAASEARPVITPITSFGNGSSWNYGWGRPVLHFGLVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDLASVALATWALLLAYYLSLVIGMCRTRYNFRQL 177
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BLAST of mRNA_M-pyrifera_M_contig13043.5825.1 vs. uniprot
Match: A0A835Z6W0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6W0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.920e-32
Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 1 
Query:   16 SFIVLLLPLFWNAAA-DGHPVITPITSLGNGS-SWNFGWARPIAHFALAFIGSFLDFHPAARLSCLVGMAQAVGFDTLSSYDLGTQIECVASGNCAMPENYSLWGLRLLNARDLASIVLATWALLLIVYLTAIIGVCRTRYRFRQL 447
            ++I LL PL   AA  D  P+  PIT+  +GS SWN+GW RP+   A AF+G F+D+HP  R  C+ G++  +  DT+S+ DL TQ  CVA G C M + Y+   L+ L  R++A+  + T AL  I+YL+A+ GV RTRY +RQL
Sbjct:   55 AYIALLAPLLTLAARWDAMPIPRPITAYRDGSGSWNYGWGRPMTGMASAFMGMFMDYHPGVRCICMGGLSVGLVLDTISAIDLDTQRYCVAEGRCPMAKGYTAQLLQWLYFREMAACAIGTCALAHILYLSAVTGVFRTRYTYRQL 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13043.5825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQK9_ECTSI7.590e-7069.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z6W0_9STRA4.920e-3245.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13043contigM-pyrifera_M_contig13043:4895..5341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog67593.Physo139551
Hectar predicted targeting categorysignal peptide
EggNOG OGs2D00G@1,2SCBE@2759,3Q8NA@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.8602736-CDS-M-pyrifera_M_contig13043:4894..53411622815805.8602736-CDS-M-pyrifera_M_contig13043:4894..5341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13043 4895..5341 -
1692277578.8002925-CDS-M-pyrifera_M_contig13043:4894..53411692277578.8002925-CDS-M-pyrifera_M_contig13043:4894..5341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13043 4895..5341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13043.5825.1prot_M-pyrifera_M_contig13043.5825.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13043 4895..5341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13043.5825.1

>prot_M-pyrifera_M_contig13043.5825.1 ID=prot_M-pyrifera_M_contig13043.5825.1|Name=mRNA_M-pyrifera_M_contig13043.5825.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
RILSGSFIVLLLPLFWNAAADGHPVITPITSLGNGSSWNFGWARPIAHFA
LAFIGSFLDFHPAARLSCLVGMAQAVGFDTLSSYDLGTQIECVASGNCAM
PENYSLWGLRLLNARDLASIVLATWALLLIVYLTAIIGVCRTRYRFRQL
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mRNA from alignment at M-pyrifera_M_contig13043:4895..5341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13043.5825.1 ID=mRNA_M-pyrifera_M_contig13043.5825.1|Name=mRNA_M-pyrifera_M_contig13043.5825.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig13043:4895..5341- (Macrocystis pyrifera P11B4 male)
AGGATCCTATCGGGGAGCTTCATAGTCCTGCTGCTGCCGCTGTTCTGGAA
CGCGGCAGCGGACGGCCACCCTGTAATTACTCCGATCACGTCGCTCGGCA
ACGGATCCTCGTGGAATTTCGGCTGGGCCCGTCCGATCGCACACTTTGCA
TTGGCATTCATAGGGTCATTTCTCGACTTCCACCCAGCCGCTAGACTGTC
ATGTTTGGTGGGCATGGCGCAAGCTGTGGGTTTTGACACTCTGTCCTCGT
ACGATCTTGGGACTCAGATCGAGTGCGTAGCCTCGGGAAACTGTGCTATG
CCAGAGAACTATAGCCTGTGGGGTCTGCGGCTGTTGAACGCCAGAGACCT
GGCGTCCATTGTCCTGGCAACGTGGGCGTTGCTCTTGATCGTATATCTAA
CCGCCATCATCGGTGTATGTCGTACGCGGTACAGATTTCGTCAACTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13043:4895..5341-

>mRNA_M-pyrifera_M_contig13043.5825.1 ID=mRNA_M-pyrifera_M_contig13043.5825.1|Name=mRNA_M-pyrifera_M_contig13043.5825.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig13043:4895..5341- (Macrocystis pyrifera P11B4 male)
AGGATCCTATCGGGGAGCTTCATAGTCCTGCTGCTGCCGCTGTTCTGGAA
CGCGGCAGCGGACGGCCACCCTGTAATTACTCCGATCACGTCGCTCGGCA
ACGGATCCTCGTGGAATTTCGGCTGGGCCCGTCCGATCGCACACTTTGCA
TTGGCATTCATAGGGTCATTTCTCGACTTCCACCCAGCCGCTAGACTGTC
ATGTTTGGTGGGCATGGCGCAAGCTGTGGGTTTTGACACTCTGTCCTCGT
ACGATCTTGGGACTCAGATCGAGTGCGTAGCCTCGGGAAACTGTGCTATG
CCAGAGAACTATAGCCTGTGGGGTCTGCGGCTGTTGAACGCCAGAGACCT
GGCGTCCATTGTCCTGGCAACGTGGGCGTTGCTCTTGATCGTATATCTAA
CCGCCATCATCGGTGTATGTCGTACGCGGTACAGATTTCGTCAACTTAGG
ATCCTATCGGGGAGCTTCATAGTCCTGCTGCTGCCGCTGTTCTGGAACGC
GGCAGCGGACGGCCACCCTGTAATTACTCCGATCACGTCGCTCGGCAACG
GATCCTCGTGGAATTTCGGCTGGGCCCGTCCGATCGCACACTTTGCATTG
GCATTCATAGGGTCATTTCTCGACTTCCACCCAGCCGCTAGACTGTCATG
TTTGGTGGGCATGGCGCAAGCTGTGGGTTTTGACACTCTGTCCTCGTACG
ATCTTGGGACTCAGATCGAGTGCGTAGCCTCGGGAAACTGTGCTATGCCA
GAGAACTATAGCCTGTGGGGTCTGCGGCTGTTGAACGCCAGAGACCTGGC
GTCCATTGTCCTGGCAACGTGGGCGTTGCTCTTGATCGTATATCTAACCG
CCATCATCGGTGTATGTCGTACGCGGTACAGATTTCGTCAACTT
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