mRNA_M-pyrifera_M_contig1300.5816.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1300.5816.1
Unique NamemRNA_M-pyrifera_M_contig1300.5816.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: A0A6H5KDE6_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE6_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 4.140e-108
Identity = 159/284 (55.99%), Postives = 206/284 (72.54%), Query Frame = 1 
Query:   13 GNFVSSVTQYPTSSWLPESVGALLAAGTKLKYIVYTHSHWDHIGAAGLVADYFAADEPLAISSRRPRWMLKGKD-KHDPNTVFGNNRGVPLPKWYQE---EVLEVGGLRFALEKAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQIKVDFFADVLAGVELALATVSVSDVVIGTGVID--GPNAGNTMLVFNEFIERVVDVCYDYVLDSSARGRDWLTELAAIDLTLRSQ 846
            G+FVSS +++PT++WL ES+ A+LA GTKLKYI+YTHSHWDHIG AGLV ++FA D P  I+S+R R  LK +D + DP ++ GNNRGVP+P+   E     L+VGGLRF ++K H H+ GD +++LDKN P NA  GI TSV  V D I PGW PFFS+  + ++ GY + ++++   D DVLVGGHLSR+GTK DVQ+  DF+ DVL G    + TVSV+DV+ GTGV D   PNAGN  L+ NE I+R VDVC  YVLDS +RGRDWL E+  +D+TLRSQ
Sbjct:   20 GSFVSSASEFPTATWLSESIEAILAPGTKLKYILYTHSHWDHIGTAGLVYEHFAEDNPTIITSKRIRAKLKARDDRGDPTSIHGNNRGVPIPEKLDEADYRELQVGGLRFEVQKLHAHERGDLVVFLDKNLPANAAEGIDTSVFFVVDVIFPGWVPFFSVAASSEIGGYYDAMDEILSYDMDVLVGGHLSRMGTKADVQLNKDFYDDVLEGARTGVTTVSVADVISGTGVFDPSNPNAGNLWLLNNELIDRNVDVCEAYVLDSVSRGRDWLAEMGGLDVTLRSQ 303
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: D8LEX6_ECTSI (Beta-lactamase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX6_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 1.660e-82
Identity = 134/245 (54.69%), Postives = 164/245 (66.94%), Query Frame = 1 
Query:  133 DHIGAAGLVADYFAADEPLAISSRRPRWMLKGKDKHDPNTVFGNNRGVPLPKW-----YQEEVLEVGGLRFALEKAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQIKVDFFADVLAGVELALATVSVSDVVIGTGVID--GPNAGNTMLVFNEFIERVVDVCYDYVLDSSARGRDWLTELAAIDLTLRSQ 846
            DHIG AG V+D+FA + P  I+S+R R  LK KD  DP +VFGNNRGVP+P+      Y+E  L VGGLRF L+K H HQ GD  I+LDK+ P NA AGI TSV MV D + PGW P F   +  DV  Y E ++ + G DFDVL+ GHL+R+GTK DVQ+  D FAD+L G     A VS +DV  GT V D   PNAGN  L+F E I R  D+C  YVLDS++RGRDWL E+A +DLTLR+Q
Sbjct:    5 DHIGGAGFVSDHFAHNNPTIIASKRIRHDLKSKDDRDPTSVFGNNRGVPIPEKLEAAEYRE--LSVGGLRFELQKIHAHQPGDLFIFLDKSVPENAAAGIDTSVFMVVDTVFPGWIPLFPTNLNPDVASYYEAMDVILGYDFDVLMAGHLTRMGTKADVQLNRDLFADILEGATAGFAAVSQADVGAGTAVSDPTNPNAGNVWLLFTELIARQTDMCAAYVLDSASRGRDWLAEVAGVDLTLRTQ 247
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: D7FY02_ECTSI (Beta-lactamase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY02_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 6.400e-73
Identity = 106/177 (59.89%), Postives = 136/177 (76.84%), Query Frame = 1 
Query:    7 PSGNFVSSVTQ-YPTSSWLPESVGALLAAGTKLKYIVYTHSHWDHIGAAGLVADYFAADEPLAISSRRPRWMLKGKDKHDPNTVFGNNRGVPLPKWYQEEVLEVGGLRFALEKAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNG 534
            P  +F SS  + +P  +WL  S+ ALL+ GTKLKYIVYTH HWDH+GAAGLV +YFAAD P AI+SRR R  +K +D  DPNTVFGNNRGVP+P+WYQEEVLEVGGLRF LEKA+ HQ GD ++ LDK++P NA  GI +++ MVTD +  GW+PF+S+ +  DV  +LE L+++NG
Sbjct:   47 PEASFTSSFGEKFPNGTWLTASIDALLSEGTKLKYIVYTHRHWDHMGAAGLVVEYFAADNPTAIASRRTRLAVKKRDTKDPNTVFGNNRGVPVPEWYQEEVLEVGGLRFTLEKANAHQGGDLMVTLDKHDPQNAGEGIDSTIFMVTDTVFAGWAPFYSVNIVQDVSDFLEALDEING 223
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: D8LKQ6_ECTSI (Beta-lactamase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ6_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 3.010e-64
Identity = 116/244 (47.54%), Postives = 145/244 (59.43%), Query Frame = 1 
Query:  133 DHIGAAGLVADYFAADEPLAISSRRPRWMLKGKD-KHDPNTVFGNNRGVPLPKWYQE---EVLEVGGLRFALEKAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQIKVDFFADVLAGVELALATVSVSDVVIGTGVID--GPNAGNTMLVFNEFIERVVDVCYDYVLDSSARGRDWLTELAAIDLTLRSQ 846
            DHIG AGLV ++FAAD P  I+S+R R  +K +D + DP ++ GNNRGVP+P+   E     L+VGGLRF + K H H+ GD +++LDKN P NA                                          G D DVLVGGHLSR+GTK DVQ+  DF+ DVL G    + TVSV+DV+ GTGV D   PNAGN  L+ NE I+R VDVC  YVLDS +RGRDWL E+  +D+TLRSQ
Sbjct:   24 DHIGTAGLVYEHFAADNPTIITSKRIRAKIKARDDRGDPTSIHGNNRGVPIPQKLDEADYRELQVGGLRFEVRKLHAHERGDLVVFLDKNLPENA----------------------------------------AEGYDMDVLVGGHLSRMGTKADVQLNKDFYDDVLKGARTGVTTVSVADVISGTGVFDPSNPNAGNLWLINNELIDRHVDVCEAYVLDSVSRGRDWLAEMGGLDVTLRSQ 227
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: UPI001EE3382E (MBL fold metallo-hydrolase n=1 Tax=Caballeronia novacaledonica TaxID=1544861 RepID=UPI001EE3382E)

HSP 1 Score: 115 bits (287), Expect = 2.400e-26
Identity = 80/244 (32.79%), Postives = 116/244 (47.54%), Query Frame = 1 
Query:  106 YIVYTHSHWDHIGAAGLVADYFAADEPLAISSRRPRWMLKGKDKHDPNTVFGNNRGVPLPKWYQEEVLEVGGLRFALE-KAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQIKVDFFADVLAGVELALATVSVSDVVIGTGVIDGPNAGNTMLVFNEFIERVVD-VCYDYVLDSSARGRDWLTELAAIDL 831
            +++Y+HSH+DHIGAA    D + AD  + I+       L+    H         R +P   + +E  LEVGG R  L  + +IHQ G+  IY  +             V M+ D I PGW PF ++ V  DV  YL   + V   DFDV+V GHL+R GT+ DV+ + ++   +      ALATV + +V   TG        N   + N + E  VD V  D +   ++ GR W   L   D+
Sbjct:  103 HVIYSHSHFDHIGAA----DIYPADA-VRIAQENTATTLQQYQDH--------RRPLPTITFVEEHTLEVGGSRLELRYRGNIHQPGNIFIYESRQK-----------VLMLVDVIFPGWVPFRNLAVANDVHEYLRAHDLVLTYDFDVMVCGHLTRHGTRADVETQREYVQQLRTASRKALATVRIEEVATRTG------TENIWALMNGYFEDAVDAVTRDMLTTPTSDGRLWTERLGGADV 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: A0A3E0C2F1_9BURK (Glyoxylase-like metal-dependent hydrolase (Beta-lactamase superfamily II) n=2 Tax=Paraburkholderia sp. BL6669N2 TaxID=1938807 RepID=A0A3E0C2F1_9BURK)

HSP 1 Score: 114 bits (286), Expect = 3.340e-26
Identity = 84/246 (34.15%), Postives = 123/246 (50.00%), Query Frame = 1 
Query:  100 LKYIVYTHSHWDHIGAAGLVADYFAADEPLAISSRRPRWMLKGKDKHDPNTVFGNNRGVPLPKWYQEEVLEVGGLRFALE-KAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQIKVDFFADVLAGVELALATVSVSDVVIGTGVIDGPNAGNTMLVFNEFIERVVDVCYDYVLD-SSARGRDWLTELAAIDL 831
            +KY+VY+HSH+DHIGAA L  D       +A SS     + +  D H P         VP   +  E VLEVGG +  L    +IHQ G+  IY             A  V M+ D I PGW PF ++ V  DV  +++    V   DFDV+V GHL+R GT+ DV+ + ++  ++ A  + ALATV + DV   TG        N   + + ++  ++++    VL  S++ GR W   LA  D+
Sbjct:  101 IKYVVYSHSHFDHIGAANLYPDSAIR---IAHSSTADL-LARYADSHRP---------VPNIVFKDEYVLEVGGRKLELRYHGNIHQPGNIFIY-----------EAAQRVLMLVDVIFPGWVPFRNLAVANDVHEFIKAHETVLAYDFDVMVCGHLTRPGTRADVEAQREYVQNLRAASKNALATVKIEDVGSRTGF------DNLWALMDGYLNDMIEMATRTVLTVSTSDGRLWSERLAGADV 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: UPI0018E48D84 (MBL fold metallo-hydrolase n=1 Tax=Geodermatophilus chilensis TaxID=2035835 RepID=UPI0018E48D84)

HSP 1 Score: 110 bits (274), Expect = 1.260e-24
Identity = 78/245 (31.84%), Postives = 114/245 (46.53%), Query Frame = 1 
Query:  106 YIVYTHSHWDHIGAAGLVADYFAADEPLAISSRRPRWMLKGKDKHDPNTVFGNNRGVPLPKWYQEEVLEVGGLRFALE-KAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQIKVDFFADVLAGVELALATVSVSDVVIGTGVIDG--PNAGNTMLVFNEFIERVVDVCYDYVLDSSARGRDWLTELAAIDL 831
            +++Y+HSH DHIGAA L    F        S+   R + +  D   P         VP   +     L VG     LE K   H+ G+  IY  +             + M  D I PGW PF  +    D+ GYL+  + V   DFDVLV GH++RLG +EDV+++ ++  D+ A    A+ TV +S V   +GV D   P AGN  L+F+ +++ V D C   +L        W+  L   D+
Sbjct:   84 HVIYSHSHSDHIGAAHL----FPESVTYVASAETARTLARVDDARRP---------VPAVTFSDSFRLNVGRQTLLLEDKGPDHEPGNIYIYAPEQK-----------ILMKIDVICPGWVPFKDLSHVKDMPGYLKAHDDVLTYDFDVLVAGHVARLGAREDVEVQREYVMDLKAHATEAIETVDISRVFEESGVADPSRPGAGNPWLLFDVYLQTVADQCTQAMLPK------WVERLGGADV 298
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: A0A2D6D6I7_9BACT (MBL fold metallo-hydrolase n=1 Tax=Parcubacteria group bacterium TaxID=2026774 RepID=A0A2D6D6I7_9BACT)

HSP 1 Score: 109 bits (273), Expect = 2.710e-24
Identity = 81/261 (31.03%), Postives = 113/261 (43.30%), Query Frame = 1 
Query:  100 LKYIVYTHSHWDHIGAAGLV---ADYFAADEPLAISSRRPR--------WMLKGKDKHDPNTVFGNNRGVPLPKWYQEEVLEVGGLRFALEKAHI-HQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQIKVDFFADVLAGVELALATVSVSDVVIGTGVIDGPNAGNTMLVFNEFIERVVDVCYDYVLDSSARGRDWLTELAAIDLTLRSQ 846
            + +++Y+H H DHI AA L    A Y A ++   + +R             + G D   PN  F  N            VL  GG R  L      H  G+ LIY  +             VAM+ D I PGW PF  + V+ DV GYL   +Q+   DFD L+ GHL+RLGTKEDV+++ ++ +D+ A    AL  V +  V   TG        N   +F  +++ V   C D  L        W T L       +SQ
Sbjct:  105 ITHVIYSHHHADHIAAANLYPANAVYLAHNDTATMINRSQNDGREFPFGTFVGGGDVPKPNVTFNTNY-----------VLISGGQRVNLTYLGTNHSPGNILIYAPQQK-----------VAMIVDVIFPGWVPFMDLAVSDDVNGYLAAHDQILAFDFDTLIAGHLTRLGTKEDVELQKEYLSDIKANATTALQEVDLMAVAEETGF------ENQWALFGTYLDEVNQQCADLTLGK------WATRLGGAPEFTKSQ 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: A0A202DF16_9ARCH (Lactamase_B domain-containing protein n=1 Tax=archaeon D22 TaxID=1932700 RepID=A0A202DF16_9ARCH)

HSP 1 Score: 107 bits (267), Expect = 8.720e-24
Identity = 73/233 (31.33%), Postives = 115/233 (49.36%), Query Frame = 1 
Query:   97 KLKYIVYTHSHWDHIGAAGLV---ADYFAADEPL-AISSRRPRWMLKGKDKHDPNTVFGNNRGVPLPKWYQEEVLEVGGLRFALE-KAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQIKVDFFADVLAGVELALATVSVSDVVIGTGVIDGPNAGNTMLVFNEFIERVVDVCYDYVLD 780
            K+ ++VYTHSH DHIG+A +    A+Y A +    A+ ++R  + +          + G    VP   + +E +LEVG     L+ K   H  G+  +Y  K             V M+ D I PGW PF    +T D+ G++E  +Q+   +FD LV GHL+RLGT+EDV ++ ++  DV+     AL TV    +   TG        N  L+F+ +++ V   C +  L+
Sbjct:   62 KITHVVYTHSHADHIGSASMYPEDAEYIAHESTKKALENQRSTYGV---------FLGGGQVPVPTTTFSEEYILEVGNQVLELKFKGANHLDGNIFVYAPKQK-----------VVMLIDVIFPGWVPFKHFALTKDLDGFIEAHDQLLEYEFDYLVAGHLTRLGTREDVLVQQEYVVDVMNNAANALQTVDFFAIASETGF------ENQWLLFDTYLDAVARDCEEKTLE 268
[Close]
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Match: UPI001BDDF298 (MBL fold metallo-hydrolase n=1 Tax=Bacillus sp. SM2101 TaxID=2805366 RepID=UPI001BDDF298)

HSP 1 Score: 108 bits (270), Expect = 8.820e-24
Identity = 81/251 (32.27%), Postives = 118/251 (47.01%), Query Frame = 1 
Query:  100 LKYIVYTHSHWDHIGAAGLVAD---YFAADEPLAISSRRPRWMLKGKDKHDPNTVFGNNRGVPL-PKWYQEEVLEVGGLRFALE-KAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAIVPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQIKVDFFADVLAGVELALATVSVSDVVIGTGVIDGPNAGNTMLVFNEFIERVVDVCYDYVLDS--SARGRDWLTELAAIDL 831
            +KY++YTH+H DHIGAA L  D    FA +E   I  +R           DPN      R +P  P    ++ L++G     L+     HQ G+  IY+               V M  D I PGW PF  + ++ D+ GY+E   ++   DFD LV GH++RLGT+EDVQ ++D+  DV    E AL T  ++ +        G N G       E    ++DV YD ++ S   A    W+ +L   D+
Sbjct:  130 IKYLIYTHAHKDHIGAASLFPDDVEIFAHEETAKILEKR----------QDPN------RPIPTKPFKGSQKKLKLGNKELLLDYMGDNHQRGNIFIYVPDQK-----------VLMAVDIIFPGWVPFRYLALSEDIPGYIEAHAKIMEYDFDTLVAGHVTRLGTREDVQTQIDYMNDVQKNAENALKTTDLNAI--------GQNVGF------ENPWHLMDVYYDEMIKSCNDATVPKWIDKLGGADI 339
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1300.5816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDE6_9PHAE4.140e-10855.99Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
D8LEX6_ECTSI1.660e-8254.69Beta-lactamase domain protein n=1 Tax=Ectocarpus s... [more]
D7FY02_ECTSI6.400e-7359.89Beta-lactamase domain protein n=1 Tax=Ectocarpus s... [more]
D8LKQ6_ECTSI3.010e-6447.54Beta-lactamase domain protein n=1 Tax=Ectocarpus s... [more]
UPI001EE3382E2.400e-2632.79MBL fold metallo-hydrolase n=1 Tax=Caballeronia no... [more]
A0A3E0C2F1_9BURK3.340e-2634.15Glyoxylase-like metal-dependent hydrolase (Beta-la... [more]
UPI0018E48D841.260e-2431.84MBL fold metallo-hydrolase n=1 Tax=Geodermatophilu... [more]
A0A2D6D6I7_9BACT2.710e-2431.03MBL fold metallo-hydrolase n=1 Tax=Parcubacteria g... [more]
A0A202DF16_9ARCH8.720e-2431.33Lactamase_B domain-containing protein n=1 Tax=arch... [more]
UPI001BDDF2988.820e-2432.27MBL fold metallo-hydrolase n=1 Tax=Bacillus sp. SM... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1300contigM-pyrifera_M_contig1300:6626..12553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.8
Seed ortholog evalue2.9e-66
Seed eggNOG ortholog2880.D8LEX6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CJFE@1,2SA2M@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size846
Cds size846
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1300.5816.1prot_M-pyrifera_M_contig1300.5816.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1300 6626..12553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.2690084-CDS-M-pyrifera_M_contig1300:6625..67571622815805.2690084-CDS-M-pyrifera_M_contig1300:6625..6757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 6626..6757 +
1692277578.4746807-CDS-M-pyrifera_M_contig1300:6625..67571692277578.4746807-CDS-M-pyrifera_M_contig1300:6625..6757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 6626..6757 +
1622815805.281785-CDS-M-pyrifera_M_contig1300:9169..94491622815805.281785-CDS-M-pyrifera_M_contig1300:9169..9449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 9170..9449 +
1692277578.4861004-CDS-M-pyrifera_M_contig1300:9169..94491692277578.4861004-CDS-M-pyrifera_M_contig1300:9169..9449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 9170..9449 +
1622815805.2914686-CDS-M-pyrifera_M_contig1300:10338..103871622815805.2914686-CDS-M-pyrifera_M_contig1300:10338..10387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 10339..10387 +
1692277578.4976544-CDS-M-pyrifera_M_contig1300:10338..103871692277578.4976544-CDS-M-pyrifera_M_contig1300:10338..10387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 10339..10387 +
1622815805.3040793-CDS-M-pyrifera_M_contig1300:10657..107281622815805.3040793-CDS-M-pyrifera_M_contig1300:10657..10728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 10658..10728 +
1692277578.5162778-CDS-M-pyrifera_M_contig1300:10657..107281692277578.5162778-CDS-M-pyrifera_M_contig1300:10657..10728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 10658..10728 +
1622815805.315577-CDS-M-pyrifera_M_contig1300:11954..121411622815805.315577-CDS-M-pyrifera_M_contig1300:11954..12141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 11955..12141 +
1692277578.5270324-CDS-M-pyrifera_M_contig1300:11954..121411692277578.5270324-CDS-M-pyrifera_M_contig1300:11954..12141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 11955..12141 +
1622815805.3280141-CDS-M-pyrifera_M_contig1300:12426..125531622815805.3280141-CDS-M-pyrifera_M_contig1300:12426..12553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 12427..12553 +
1692277578.536938-CDS-M-pyrifera_M_contig1300:12426..125531692277578.536938-CDS-M-pyrifera_M_contig1300:12426..12553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 12427..12553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1300.5816.1

>prot_M-pyrifera_M_contig1300.5816.1 ID=prot_M-pyrifera_M_contig1300.5816.1|Name=mRNA_M-pyrifera_M_contig1300.5816.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=282bp
MTPSGNFVSSVTQYPTSSWLPESVGALLAAGTKLKYIVYTHSHWDHIGAA
GLVADYFAADEPLAISSRRPRWMLKGKDKHDPNTVFGNNRGVPLPKWYQE
EVLEVGGLRFALEKAHIHQAGDYLIYLDKNNPTNADAGIATSVAMVTDAI
VPGWSPFFSMGVTGDVQGYLEGLNQVNGVDFDVLVGGHLSRLGTKEDVQI
KVDFFADVLAGVELALATVSVSDVVIGTGVIDGPNAGNTMLVFNEFIERV
VDVCYDYVLDSSARGRDWLTELAAIDLTLRSQ
back to top

mRNA from alignment at M-pyrifera_M_contig1300:6626..12553+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1300.5816.1 ID=mRNA_M-pyrifera_M_contig1300.5816.1|Name=mRNA_M-pyrifera_M_contig1300.5816.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5928bp|location=Sequence derived from alignment at M-pyrifera_M_contig1300:6626..12553+ (Macrocystis pyrifera P11B4 male)
ATGACCCCCTCAGGAAATTTTGTGTCCAGTGTTACGCAGTATCCCACCAG
CTCATGGCTTCCGGAGTCGGTTGGAGCTCTGCTGGCAGCGGGAACGAAGC
TTAAGTACATCGTCTACACGCATTCTCACTGGGTAAGCGTGACTCGCTCT
GCGCTGTGTGTGGTTTGGATACATTCTTAAAACACTTGTGGCAATACTGC
TGTGTTGCATCCAGATTGCTCGTATTATTATTTACACCGACGAAAGGCAT
CGACATATTTTACTTTTATTTCCCTTGGTTTTCTTATTGGGGAGGAACGT
TTGGAATGATCAACGTTGAAGCTGTGTCAGAGAGCTTTGGCTCCAGAATT
TCTAGATTTAAGACGGGGTTTTTTCGCGCAATATTTTCCGCTTCCAGATT
TTCCGTATTTCTCCGCTCAAAGATGGAAATTTAACGTTCTCTTTTTCTTA
TCAAAATTCGACAAAACGCCTCCGTATCTTGATACATTTACATACTCGTA
TAAATTCCAAAATCTGGAGTTCGGGAAAAAAAAAATTACCTTTCAACTTT
TTTTTCGATTTCTTCTATGAATGGTCGCATGCATTGCCCTTCTGCAGGCG
CTGGCAATGGTGTCCGTACGTTACTGTTACAATGTAGTACAGGTATACAG
CAGTAGTACTGTAGTAGCATTATAGCTTCCCATCTTTTCTCAATCCCGTG
AATTATTCAGGGCTTTTCGCGGGTCATGACCCGACCCGCTGGTCGGATCA
CGGGGTTTTCTAAATGTCACGGGTCGGGTCGGGTCGGGTCAGGAAGTGTT
CAAACTCTCACGGGTCGGGCCAGGTCGGGTCAAGAACTTTTCAAATCTCA
CAGGTTGGGTCGGATCGGGCCAAGAGGTGATGAAAAGCTCACGGGTCGGG
TCAGGGCATGACCCGTGAGAAACGGGTCACTCGCGGGTCGGGCCAGCGTG
ACCTGCGAGTTGTTTTCTGCTGACACGCGGGTCGGACCCGCGCATCCGGC
CCGCGGACCCGACACTTAAAAAACTTCCCGCTCTCTCGCCCAAAGGCTTC
TCTCGTACAAATACTCAATAATAATACTCCTTTGATATCTTATTCAAACA
TGAAAACACCGCTAAATCTATATACGCATGCCCGCATCCATCCATACCCA
CTACAACCAGGCCACATATCGCTGCTGGGCACAAACATGAATACTAAATT
GTTTTTGAAGTGTCGACCCACGGGCCGGGTCCGCAGGCCGAACCTGCGGG
TCAAGATAAATGGTCTCGCGGGTCAAGGTGACCCGACCCGCATGAAACCC
ATGTCTCACAGGTCAATCCGAAATTGGCGGGTCGAGTCGGGCCGGGTCAG
GAGGTTTTTAAATCTCGCGGATCGGGTCGGGTGGGGTCAGGAGATTTTGC
AATCTCACGGGTCGGGTCCGGTCAACTTTTTTAATCTCGCGGGTCGGGTC
TGGTCAGGCCAAGAGGCTTTCCAAATCTCGCGGGTCAGGTCGGGTCAAGC
CAACACACCTAAAAAATTTCGCGGGTCGGGTCGGGTCAGCTGACTCGACC
CGAACCAACCCGACCCGTGAGGTTTGACCTGACCCGCGAAAAGACGTGGA
ATTTTTCATGTCAAGACCACATGTAAATTGTACCCGCTGCTGCTGAACAG
TAGTACACATGTTGTGTTTTGCGCTTGTCCGAAGTCTTGAAACAACGAGA
TCGAGCGAGGAAGTTGCCAGCCCGTTGCCTTGTGATTGTAGCTCGGTGTT
GTGTAGAACTCCGAGTAGTATTTGATATGGTGCATCCAAGTATAGTCTAC
GCGACAACACAACACACAAAGTTAAAGCATTGCTCCGTTTTTTTCTCGGC
AGTTGGTCTATTGGAAGATGTGCGTGGTTTTCAGCAGAGGGTGTTGCTGC
AGCTTATGGCAGTGGTCGCCAGTTGTTTTATTTCGCACTTGCTACCATAT
AGACACACGCACACACACAAGTACAGATAATAGGTAGAGGTCGGCTGTAC
GTAGGCAATCGAACTTTTTTTTTTTAACACCTGCTTTCGCGCCATTTTTT
AGCTAGCTCACAATGATCCCACCGAGCGGTATGCTGTTTCCTGTTCGCGC
CTCACGCTGCTCGCCCCGCCCTGCTCTGACCTGTGCTTCCTCAGCCATAC
TCTCATCGTGTCCCGGTGTCCAGAGGAGGGTGCTACTTTTGGTTTTTTCG
AGTATTATGGTGTCAAGTGTCGACTCGTAGGTATAGAAACACACCAGTCT
AGGTCTAAGTATATTTAGTTCGGATACTTCAACGCACGGCGGTAATGTCT
TCAGCTGAGGTCTTGCTGCTGCCGATTTTAGTTAATATCGAGGTCATTCT
ATCACGGTGTATTATATCGTACCATACGAACATATTTTTACGTTGAAGGA
ATACGAACGCACAAGTCCTCACATCACTATCGCAGAGCCTGTGTCACTTC
TTATACACACCCTCTCGGAAACATTGCGTTTACCATTAGCCCCTGCGCCC
GTCGACCCGCTCCCCCCCCCCTTTTTTTCTACACGTGTTTGCAGGACCAC
ATCGGTGCCGCGGGCCTGGTGGCGGACTACTTTGCGGCAGATGAACCACT
GGCGATCTCATCCCGCCGGCCAAGGTGGATGCTGAAGGGCAAAGATAAAC
ACGACCCCAACACCGTCTTCGGTAACAACCGCGGCGTGCCTTTGCCCAAG
TGGTACCAGGAGGAGGTACTTGAGGTGGGCGGCCTCCGGTTCGCGCTGGA
AAAAGCTCACATCCACCAGGCGGGGGACTACCTGATCTACCTCGACAAGA
ACAACCCGACTAACGCCGATGCAGGTACGACCATTTCAATGTAACAGATC
GGGTACAGTATGAGAGCTGCGAACTCGCTGGTGCCATCATCTTGTACGTA
GAGGTACCGTTTTTCTCGCGTTTGGCTAAATTTCCTCTACAAATAGCAAG
CTTCTTCGTAGCGGTGTGCGTGCTGGGGCTGAATAGTTTGCTTATTTGCT
GCCTGTTTGTCTACCGTGTATCAAGGATTGCATTAAGTCATAGCCAGGCA
TGTGGGACTGTGTTATGTTCTTCTTTTTCGTCTTCTTCTTCGTCTTATCC
TTGTTCTCACCTACTACGGTTTGAATCCCAACGCGCACGGCCTACTGCAA
GTATGAGGCTGTCTTGCCTCATTGACACTCTAGTGTATGTATATTGTGAA
TCGCAAATTGTACCATACGTTAGCAATGTGTAGGTTAGTCAACGCGAGAG
AGGTACCACGCATTTCAATGCACACTCACGCCCATGGGTTCGCAGCCATC
AGGTTTTGTGCCCCTCAAAAAGGAGTGTATGCTAGGTTTTCGCCAATTAC
ACCGCCGGCTCAATGTAGCCTGTATCCGCACATTTTTTATACCCTTCATG
AGGTCGTATAGAACTCGTAGTACGCGCGATGGAAGTATGATGCGCAGGTT
ACAAATATGAGAATCGTCGATATCCTCGACCTCACAGCTGATGATGTTAT
ACGCGTTGAACGTAACGTGAAAGAGGGATACCTTATACTTTGATCCGTGA
ACGTAAATTGAATGGATGTATGTGTGGGTTTACTCCTCGCCTCACCCAAT
TGGGCTGGAACAACAAACTGTTGTTCATATGTAACTACGTATACGAGTAT
GCCCACGCAATGCCTTCCTGTCCCCTGCTGTGTGACGTGTCCCTATGTCT
TGAATCTCTGCAGGAATCGCAACCAGCGTAGCAATGGTAACCGATGCCAT
CGTCCCGGGTTGGTGAGTGCTGCGCATAAATTTTGCGGTTCAGAGGTGTT
GAGAGGTAGACTGCTTGCTTGCGGCTCATATCGAATTCCACGTGTATCCT
ATCAATAATAGTAGTATGGGCAAGAGGGTGGAGAAGAAGGAAACCCCCTC
CTACCCGTGTACGAAACCTCCTGACATTTACGCTCGTACCACTGGATCTC
GCCTCGACTTTGTGTTAAAGATCAAGATTCCGTTTTTTTTTTGGAAATTT
GATTTCCAATCGTTCGTGTCGGTGCTGCATAGGTCTCCCTTCTTCTCTAT
GGGGGTCACTGGAGATGTCCAAGGCTACCTCGAGGGCCTCAACCAAGTGA
ACGGTGCGGTTGTTAAGTTTGGACGAGCGCGCAATGATAGGACGAATTTT
TGTTGCGGTGGTTTCCGGCGCGATGTTTACTTTCCGCCCAACACCAGCGT
CCCCGACGGCATGAAACCATGCACCGTAGTTAGGGTCGATCTTAACGAGG
AGTGCATTTCTGTATTTTCCGGGATTTCGGATTTTTCTTATAGGGAAATA
CGAAACTTCGGGAAAATATTAAAAAAAAATGAAAGACAGCCCTCGTTAAG
ATGGACCCTTACCCTCTTGCTATTTTTCTGACAAGTTGGATTGCTCCTTA
TTATTTTTCCATTCCATTTACCGCTGTATGGACCCGCTATTAATAGCAAG
CGTAAAAAACTAAATCGAGCTGGCCTTGAAATCTTATCGTGACACCAATT
TTGTGTAACCTTGAATGTAGATTGTCGTGTAGGATTTAATGTAGCTCTCG
CCGCCGAGCACGATTTCTGAACCGAAATTACTTTGCGTCCCTCAAACACT
GATTCAATGTTCTTATTGCAGTAGGCCTTTTATGTTCGTTAGCCTGTGCT
GCATTGTCTTTTGAGCCTACTTTCCCAGCTCCCTCGCTTTCGTAGCTCAG
ATGCGAGGTCACATATCAGGGTGGTCCTACTTCCTCCCAACTACGGTGTG
CATGCGTTGGTATTTATTCTGAGGATATACGAGCTGGTTCCAGCACAACG
CACACCGTTTCACCTTTGTTCGGGCGAGAAAATTTAGAATGCGTCGCACT
TTTCGATAACGAACGTGTCTACATGACCGCACAGACAAGGGGAACACAAC
CGTGAAGACATTGTTTCACATATATATGCCTTGAAGAATAACCGTGCCAA
ACAAGTGCGTTTCGACTGTCAAAAACCACGCCGCAAAGTTCTGAAGCCGA
AGTCTTCCGCCCGTCGCTGGAACCAGCTCGTGTCAGCACTACATTCCCTC
TTCGACTCGCGTCGAATTGTGCGAACACACGCAACTGACAGGCGCTTTCT
GCGGCCAACTACGCGTATTTGCAACGCACAAGGAACATGCCCCGCTTGGG
GGTCTCGGGCTCGCGAAATCGACTTTAGTACCTACGAGATATTTAACTGA
TAGCTGGTACTACATCACCGGCGGCGTGAAGAAATACAACTGTTACTATG
CTGCAGATTGTACCCGGTAGACAGGCGTAAGCTTGAAACTGGTACTTGCA
TACCCCCCCGCACTCTTTGGCGCCACCAGGTGTTGACTTCGACGTGCTCG
TGGGTGGTCACCTCTCTCGCCTGGGAACGAAGGAGGATGTTCAGATCAAG
GTCGACTTCTTCGCCGATGTCCTTGCTGGCGTCGAGCTCGCGCTTGCCAC
CGTCTCTGTGTCTGATGTCGTCATTGGTACCGGCGTCATCGACGGCCCGA
ACGCGGGTAACACCATGTGCGTTTGGTAAAGGCTGCCGCGGTCCGGAAGG
TAGCCGTCGAGATGTATCGTGTGGTCGCTCTACCTGCCGTTCTTCATCTC
GGTGCCGCGTTTATTGAAGGAGCATCGATTGCACTATCACGAACGATACA
GTTGTCGTGCTGCATGCAACGGGCGACCGCAGCACACGCTTACTACTGCG
TGGCATTTGCATGATATCGCTTTAGTACGTGGGACGCGCCACGTGCACGT
TTCCATTGTCGCTTAATTCCAAACAATCTCCCTTTTGTCTACCCTCTCCA
GGCTGGTATTCAACGAGTTCATCGAACGTGTGGTCGATGTGTGCTACGAC
TACGTCTTGGACTCCTCGGCCAGAGGACGAGATTGGCTCACCGAACTGGC
CGCGATCGACCTTACGCTTCGTTCTCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1300:6626..12553+

>mRNA_M-pyrifera_M_contig1300.5816.1 ID=mRNA_M-pyrifera_M_contig1300.5816.1|Name=mRNA_M-pyrifera_M_contig1300.5816.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1692bp|location=Sequence derived from alignment at M-pyrifera_M_contig1300:6626..12553+ (Macrocystis pyrifera P11B4 male)
ATGACCCCCTCAGGAAATTTTGTGTCCAGTGTTACGCAGTATCCCACCAG
CTCATGGCTTCCGGAGTCGGTTGGAGCTCTGCTGGCAGCGGGAACGAAGC
TTAAGTACATCGTCTACACGCATTCTCACTGGATGACCCCCTCAGGAAAT
TTTGTGTCCAGTGTTACGCAGTATCCCACCAGCTCATGGCTTCCGGAGTC
GGTTGGAGCTCTGCTGGCAGCGGGAACGAAGCTTAAGTACATCGTCTACA
CGCATTCTCACTGGGACCACATCGGTGCCGCGGGCCTGGTGGCGGACTAC
TTTGCGGCAGATGAACCACTGGCGATCTCATCCCGCCGGCCAAGGTGGAT
GCTGAAGGGCAAAGATAAACACGACCCCAACACCGTCTTCGGTAACAACC
GCGGCGTGCCTTTGCCCAAGTGGTACCAGGAGGAGGTACTTGAGGTGGGC
GGCCTCCGGTTCGCGCTGGAAAAAGCTCACATCCACCAGGCGGGGGACTA
CCTGATCTACCTCGACAAGAACAACCCGACTAACGCCGATGCAGGACCAC
ATCGGTGCCGCGGGCCTGGTGGCGGACTACTTTGCGGCAGATGAACCACT
GGCGATCTCATCCCGCCGGCCAAGGTGGATGCTGAAGGGCAAAGATAAAC
ACGACCCCAACACCGTCTTCGGTAACAACCGCGGCGTGCCTTTGCCCAAG
TGGTACCAGGAGGAGGTACTTGAGGTGGGCGGCCTCCGGTTCGCGCTGGA
AAAAGCTCACATCCACCAGGCGGGGGACTACCTGATCTACCTCGACAAGA
ACAACCCGACTAACGCCGATGCAGGAATCGCAACCAGCGTAGCAATGGTA
ACCGATGCCATCGTCCCGGGTTGGAATCGCAACCAGCGTAGCAATGGTAA
CCGATGCCATCGTCCCGGGTTGGTCTCCCTTCTTCTCTATGGGGGTCACT
GGAGATGTCCAAGGCTACCTCGAGGGCCTCAACCAAGTGAACGGTCTCCC
TTCTTCTCTATGGGGGTCACTGGAGATGTCCAAGGCTACCTCGAGGGCCT
CAACCAAGTGAACGGTGTTGACTTCGACGTGCTCGTGGGTGGTCACCTCT
CTCGCCTGGGAACGAAGGAGGATGTTCAGATCAAGGTCGACTTCTTCGCC
GATGTCCTTGCTGGCGTCGAGCTCGCGCTTGCCACCGTCTCTGTGTCTGA
TGTCGTCATTGGTACCGGCGTCATCGACGGCCCGAACGCGGGTAACACCA
TGTGTTGACTTCGACGTGCTCGTGGGTGGTCACCTCTCTCGCCTGGGAAC
GAAGGAGGATGTTCAGATCAAGGTCGACTTCTTCGCCGATGTCCTTGCTG
GCGTCGAGCTCGCGCTTGCCACCGTCTCTGTGTCTGATGTCGTCATTGGT
ACCGGCGTCATCGACGGCCCGAACGCGGGTAACACCATGCTGGTATTCAA
CGAGTTCATCGAACGTGTGGTCGATGTGTGCTACGACTACGTCTTGGACT
CCTCGGCCAGAGGACGAGATTGGCTCACCGAACTGGCCGCGATCGACCTT
ACGCTTCGTTCTCAGGCTGGTATTCAACGAGTTCATCGAACGTGTGGTCG
ATGTGTGCTACGACTACGTCTTGGACTCCTCGGCCAGAGGACGAGATTGG
CTCACCGAACTGGCCGCGATCGACCTTACGCTTCGTTCTCAG
back to top