mRNA_M-pyrifera_M_contig13.5815.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13.5815.1
Unique NamemRNA_M-pyrifera_M_contig13.5815.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13.5815.1 vs. uniprot
Match: A0A034WV72_BACDO (Werner Syndrome-like exonuclease n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034WV72_BACDO)

HSP 1 Score: 74.3 bits (181), Expect = 2.660e-13
Identity = 51/155 (32.90%), Postives = 77/155 (49.68%), Query Frame = 1
Query:    1 PVVGFDMEWHAPCVKNVSPSRTALIQICSSATFCAVFALGDFDEMPISLPTFLWNQDVLK---GTSRSCLHKDFSDLKGPAGPYAELTSLLPQQPAKKRSLAYLVLVDTDKKMDKDLGEGALFDWTSPINPADQLQYAVNDAAAGLEVYEALLRK 456
            PV+G D EW       V     +L+Q+CS   +CAV  L     +P+SL   L ++ V+K   G ++ C H +  DL  P     +L  +     AK ++LA +        + KDL E  L DW +      Q+QYA +DA AG+E+Y+ L +K
Sbjct:   55 PVLGLDCEW-------VDAPNVSLLQLCSHKGYCAVIRLCKMASIPMSLCNLLSDRKVVKVGVGIAKDCEHLEECDL--PTNSALDLRFVAKLTGAKPQNLADMYKAVVGGTLKKDL-ELTLSDWEAYTLTPQQIQYAADDAKAGIEIYKTLAKK 199          
BLAST of mRNA_M-pyrifera_M_contig13.5815.1 vs. uniprot
Match: UPI001A97238D (exonuclease 3'-5' domain-containing protein 2-like n=1 Tax=Bactrocera tryoni TaxID=59916 RepID=UPI001A97238D)

HSP 1 Score: 73.2 bits (178), Expect = 7.230e-13
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 1
Query:    1 PVVGFDMEWHAPCVKNVSPSRTALIQICSSATFCAVFALGDFDEMPISLPTFLWNQDVLK---GTSRSCLHKDFSDLKGPAGPYAELTSLLPQQPAKKRSLAYLVLVDTDKKMDKDLGEGALFDWTSPINPADQLQYAVNDAAAGLEVYEALLRK 456
            P +G D EW       V     +++Q+CS   +CAV  L   + +P+SL   L ++ V+K   GT++ C H +  DL  P     +L  +     AK ++LA +        + KDL E    DW +      Q+QYA +DA AG+E+Y+AL  K
Sbjct:   55 PALGLDCEW-------VDAPYVSVLQLCSHKGYCAVIRLCKMESIPMSLCNLLSDRKVVKVGVGTAKDCEHLEECDL--PTKSALDLRFVAKLTGAKAQNLAEMYKAVVGGTLKKDL-ELIRSDWEADTLTPQQIQYAADDAIAGIEIYKALANK 199          
BLAST of mRNA_M-pyrifera_M_contig13.5815.1 vs. uniprot
Match: A0A0K8TXS6_BACLA (Werner syndrome ATP-dependent helicase n=3 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8TXS6_BACLA)

HSP 1 Score: 69.7 bits (169), Expect = 1.430e-11
Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = 1
Query:    1 PVVGFDMEWHAPCVKNVSPSRTALIQICSSATFCAVFALGDFDEMPISLPTFLWNQDVLK---GTSRSCLHKDFSDLKGPAGPYAELTSLLPQQPAKKRSLAYLVLVDTDKKMDKDLGEGALFDWTSPINPADQLQYAVNDAAAGLEVYEALLRK 456
            PV+G D EW       V+    +++Q+CS   +CAV  L   D +P+SL   L ++ V+K   G  + C + +  DL  P     +L  +     AK ++LA +        + KDL +    DW +      Q+QYA +DA AG+E+Y+AL  K
Sbjct:   55 PVLGLDCEW-------VNAPNVSVLQLCSHKGYCAVIRLCKMDTIPMSLCNLLIDRKVVKVGVGIKKDCEYLEECDL--PTKSALDLRFVAKLTGAKAQNLAEMYKAVVGGTLTKDL-QLIRSDWEADTLTPKQVQYAADDAKAGIEIYKALSNK 199          
BLAST of mRNA_M-pyrifera_M_contig13.5815.1 vs. uniprot
Match: A0A0A1XE10_ZEUCU (Werner syndrome ATP-dependent helicase homolog n=3 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1XE10_ZEUCU)

HSP 1 Score: 59.3 bits (142), Expect = 9.900e-8
Identity = 46/155 (29.68%), Postives = 73/155 (47.10%), Query Frame = 1
Query:    1 PVVGFDMEWHAPCVKNVSPSRTALIQICSSATFCAVFALGDFDEMPISLPTFLWNQDVLK---GTSRSCLHKDFSDLKGPAGPYAELTSLLPQQPAKKRSLAYLVLVDTDKKMDKDLGEGALFDWTSPINPADQLQYAVNDAAAGLEVYEALLRK 456
            PV+GFD EW       V+    +L+Q+CS   +CAV  L +    P SL   L ++ V+K   G +  C +    +L   +       + L  + A+  +  Y  +V    K D +L   +  DW +      Q+QYA +DA AG+E+Y  L +K
Sbjct:   55 PVLGFDCEW-------VNAPDVSLLQLCSHKGYCAVIRLCNIPNPPSSLCDLLSDRKVVKVGVGITSDCQYLRTCNLPTNSALDLRFMAKLTGERAQNLADMYKDVVGGTLKKDFEL---SCSDWEAFQLTPQQIQYAADDAIAGMEIYLQLAKK 199          
BLAST of mRNA_M-pyrifera_M_contig13.5815.1 vs. uniprot
Match: UPI0006B6D6A1 (exonuclease 3'-5' domain-containing protein 2 n=1 Tax=Bactrocera oleae TaxID=104688 RepID=UPI0006B6D6A1)

HSP 1 Score: 54.7 bits (130), Expect = 4.750e-6
Identity = 42/155 (27.10%), Postives = 68/155 (43.87%), Query Frame = 1
Query:    1 PVVGFDMEWHAPCVKNVSPSRTALIQICSSATFCAVFALGDFDEMPISLPTFLWNQDVLK---GTSRSCLHKDFSDLKGPAGPYAELTSLLPQQPAKKRSLAYLVLVDTDKKMDKDLGEGALFDWTSPINPADQLQYAVNDAAAGLEVYEALLRK 456
            PVVGFD EW       V     +++Q+CS             + +P SL   L ++ V+K   GT+R C   +   L   +       + L  + A+  +  Y+ +V         L   +  DW +      Q+QYA +DA AG+E+Y+ L +K
Sbjct:   56 PVVGFDCEW-------VHEGAVSVLQLCSHXXXXXXXXXXKIENLPRSLCDLLKDRKVVKVGVGTARDCTFLEACGLPTRSALDLRFVAKLTGENAQNLAAMYMDVVGGTLTKSFSL---SCSDWEAYKLTPQQVQYAADDAIAGIEIYKTLAKK 200          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13.5815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A034WV72_BACDO2.660e-1332.90Werner Syndrome-like exonuclease n=1 Tax=Bactrocer... [more]
UPI001A97238D7.230e-1332.26exonuclease 3'-5' domain-containing protein 2-like... [more]
A0A0K8TXS6_BACLA1.430e-1131.61Werner syndrome ATP-dependent helicase n=3 Tax=Bac... [more]
A0A0A1XE10_ZEUCU9.900e-829.68Werner syndrome ATP-dependent helicase homolog n=3... [more]
UPI0006B6D6A14.750e-627.10exonuclease 3'-5' domain-containing protein 2 n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13contigM-pyrifera_M_contig13:28557..29180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size438
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13.5815.1prot_M-pyrifera_M_contig13.5815.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13 28575..29180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.1430435-UTR-M-pyrifera_M_contig13:28556..285741622815805.1430435-UTR-M-pyrifera_M_contig13:28556..28574Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13 28557..28574 +
1692277578.4185817-UTR-M-pyrifera_M_contig13:28556..285741692277578.4185817-UTR-M-pyrifera_M_contig13:28556..28574Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13 28557..28574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.1534154-CDS-M-pyrifera_M_contig13:28574..287361622815805.1534154-CDS-M-pyrifera_M_contig13:28574..28736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13 28575..28736 +
1692277578.4271197-CDS-M-pyrifera_M_contig13:28574..287361692277578.4271197-CDS-M-pyrifera_M_contig13:28574..28736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13 28575..28736 +
1622815805.164085-CDS-M-pyrifera_M_contig13:28904..291801622815805.164085-CDS-M-pyrifera_M_contig13:28904..29180Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13 28905..29180 +
1692277578.4365542-CDS-M-pyrifera_M_contig13:28904..291801692277578.4365542-CDS-M-pyrifera_M_contig13:28904..29180Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13 28905..29180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13.5815.1

>prot_M-pyrifera_M_contig13.5815.1 ID=prot_M-pyrifera_M_contig13.5815.1|Name=mRNA_M-pyrifera_M_contig13.5815.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MEWHAPCVKNVSPSRTALIQICSSATFCAVFALGDFDEMPISLPTFLWNQ
DVLKGTSRSCLHKDFSDLKGPAGPYAELTSLLPQQPAKKRSLAYLVLVDT
DKKMDKDLGEGALFDWTSPINPADQLQYAVNDAAAGLEVYEALLRK
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mRNA from alignment at M-pyrifera_M_contig13:28557..29180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13.5815.1 ID=mRNA_M-pyrifera_M_contig13.5815.1|Name=mRNA_M-pyrifera_M_contig13.5815.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig13:28557..29180+ (Macrocystis pyrifera P11B4 male)
CCAGTAGTGGGCTTCGACATGGAGTGGCACGCGCCCTGCGTGAAGAACGT CTCCCCAAGCAGGACTGCTTTGATCCAGATCTGCAGCAGTGCCACGTTCT GCGCTGTCTTTGCGCTAGGCGACTTCGACGAGATGCCGATAAGCCTTCCC ACTTTCTTGTGGAATCAAGATGTCCTAAAGGTAAATTGGAAATTAATTTG AAGCGTCGGTATTTTTAATCTGTTCATAGCAAAGTTTTGCACCCCCTCCC TCCACGTTCATGCGAAGCGTGGTGAAATGCGCTATACAGGTACGTCACAC AATGTCGCCCTGTGTTCTTGTCGCTGCAGGTCGGCAACAACATAAGAGGG GACTTCAAGAAGCTGTCTCCACAAGGACTTCAGCGATCTAAAAGGACCGG CCGGCCCCTACGCCGAGCTTACAAGCTTGCTACCGCAGCAGCCAGCGAAG AAGCGGAGCCTGGCTTACCTTGTCTTAGTTGACACAGACAAAAAAATGGA CAAGGACCTTGGGGAAGGGGCGCTATTCGACTGGACCTCGCCGATTAATC CTGCTGACCAACTACAATACGCCGTGAACGATGCCGCAGCGGGCCTCGAG GTCTACGAAGCGCTGCTAAGGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13:28557..29180+

>mRNA_M-pyrifera_M_contig13.5815.1 ID=mRNA_M-pyrifera_M_contig13.5815.1|Name=mRNA_M-pyrifera_M_contig13.5815.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig13:28557..29180+ (Macrocystis pyrifera P11B4 male)
ATGGAGTGGCACGCGCCCTGCGTGAAGAACGTCTCCCCAAGCAGGACTGC
TTTGATCCAGATCTGCAGCAGTGCCACGTTCTGCGCTGTCTTTGCGCTAG
GCGACTTCGACGAGATGCCGATAAGCCTTCCCACTTTCTTGTGGAATCAA
GATGTCCTAAAGATGGAGTGGCACGCGCCCTGCGTGAAGAACGTCTCCCC
AAGCAGGACTGCTTTGATCCAGATCTGCAGCAGTGCCACGTTCTGCGCTG
TCTTTGCGCTAGGCGACTTCGACGAGATGCCGATAAGCCTTCCCACTTTC
TTGTGGAATCAAGATGTCCTAAAGGGGACTTCAAGAAGCTGTCTCCACAA
GGACTTCAGCGATCTAAAAGGACCGGCCGGCCCCTACGCCGAGCTTACAA
GCTTGCTACCGCAGCAGCCAGCGAAGAAGCGGAGCCTGGCTTACCTTGTC
TTAGTTGACACAGACAAAAAAATGGACAAGGACCTTGGGGAAGGGGCGCT
ATTCGACTGGACCTCGCCGATTAATCCTGCTGACCAACTACAATACGCCG
TGAACGATGCCGCAGCGGGCCTCGAGGTCTACGAAGCGCTGCTAAGGAAG
GGGACTTCAAGAAGCTGTCTCCACAAGGACTTCAGCGATCTAAAAGGACC
GGCCGGCCCCTACGCCGAGCTTACAAGCTTGCTACCGCAGCAGCCAGCGA
AGAAGCGGAGCCTGGCTTACCTTGTCTTAGTTGACACAGACAAAAAAATG
GACAAGGACCTTGGGGAAGGGGCGCTATTCGACTGGACCTCGCCGATTAA
TCCTGCTGACCAACTACAATACGCCGTGAACGATGCCGCAGCGGGCCTCG
AGGTCTACGAAGCGCTGCTAAGGAAG
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