mRNA_M-pyrifera_M_contig12983.5808.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12983.5808.1
Unique NamemRNA_M-pyrifera_M_contig12983.5808.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12983.5808.1 vs. uniprot
Match: D7G8W0_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W0_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 8.390e-39
Identity = 69/122 (56.56%), Postives = 87/122 (71.31%), Query Frame = 1 
Query:    1 QNLAVFGTCNPYVLVKLKSSLDSLTTAVKDCDANPSWQETFTFRNASSTDGLQICLMEKEGPREGVVSVGNFIPSSAWGYPGIGGADHVTEIKMP----GNGKPETEIMGTIILKLQYHVEV 354
            QNL  FGTCNPYVL+K+ SS ++ TT V++ DANPSW ETF FRN +STD LQI LMEKEG REGVVSV   + ++ WG+PG+GG + V E+ MP      G P    MGT++LKLQY  ++
Sbjct:   21 QNLKAFGTCNPYVLLKMTSSPETKTTGVRESDANPSWHETFIFRNVASTDALQISLMEKEGSREGVVSVRGGVRATEWGFPGVGGGERVLEVTMPCTTDTTGVPN---MGTVVLKLQYRAQL 139
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12983.5808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8W0_ECTSI8.390e-3956.56C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12983contigM-pyrifera_M_contig12983:162..4077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size381
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12983.5808.1prot_M-pyrifera_M_contig12983.5808.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12983 162..4077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815804.5524685-CDS-M-pyrifera_M_contig12983:161..3961622815804.5524685-CDS-M-pyrifera_M_contig12983:161..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12983 162..396 -
1692277578.070181-CDS-M-pyrifera_M_contig12983:161..3961692277578.070181-CDS-M-pyrifera_M_contig12983:161..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12983 162..396 -
1622815804.5660615-CDS-M-pyrifera_M_contig12983:2451..25101622815804.5660615-CDS-M-pyrifera_M_contig12983:2451..2510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12983 2452..2510 -
1692277578.0782187-CDS-M-pyrifera_M_contig12983:2451..25101692277578.0782187-CDS-M-pyrifera_M_contig12983:2451..2510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12983 2452..2510 -
1622815804.5770295-CDS-M-pyrifera_M_contig12983:3990..40771622815804.5770295-CDS-M-pyrifera_M_contig12983:3990..4077Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12983 3991..4077 -
1692277578.0863376-CDS-M-pyrifera_M_contig12983:3990..40771692277578.0863376-CDS-M-pyrifera_M_contig12983:3990..4077Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12983 3991..4077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12983.5808.1

>prot_M-pyrifera_M_contig12983.5808.1 ID=prot_M-pyrifera_M_contig12983.5808.1|Name=mRNA_M-pyrifera_M_contig12983.5808.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
QNLAVFGTCNPYVLVKLKSSLDSLTTAVKDCDANPSWQETFTFRNASSTD
GLQICLMEKEGPREGVVSVGNFIPSSAWGYPGIGGADHVTEIKMPGNGKP
ETEIMGTIILKLQYHVEVCESRIPLSV
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mRNA from alignment at M-pyrifera_M_contig12983:162..4077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12983.5808.1 ID=mRNA_M-pyrifera_M_contig12983.5808.1|Name=mRNA_M-pyrifera_M_contig12983.5808.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3916bp|location=Sequence derived from alignment at M-pyrifera_M_contig12983:162..4077- (Macrocystis pyrifera P11B4 male)
CAGAACCTTGCGGTGTTCGGCACCTGCAACCCCTACGTCCTGGTGAAGCT
CAAGTCTTCGCTCGACAGCCTCACCACAGCCGTCAAGGTGCCACCTATTT
AATCGTTTCTTTTTTTTGTTTGTTTTTTCTTACCTTCGTTTTTTTGTGAG
TTTTTTTTGTATGTGGTAATTTTGTGGTGTGCTGTACTGTAGTGTGGTGT
TTTTTTGCTTGTTTGTTTGTTTTGTTTTCTGTGGTGTAGTGTGGTGTGGT
GTGATGTGATGTGTGGTGTTTTTGTTTTTTCGAGAGGTTAGCCTTGGTGT
ACTTGGTATGATATCCTCTCAGCCGTGTCTTGCGTGCGTTTTTGTTGGGG
GGGTTGGGCGCATCTATCGCACGCATTGCCCGGTATATCGTGTCTGGCAC
CACCCGAGTGCGCCGCCCGATAGTTGTCGGTATCGATCAGTGCTACGCCT
TCCACGACTGTAGGCGCATCGCCTCCCCACCAATACAAGGAACCCCCCCC
TCCTCCTCCCCCCTCCTCCGTAGAGGAGGGGAGAGGTGGGCTGGCGAGCT
TGATACCCTCCTGTCTGCTTACATGCCTGCAATTTTGTAGGCTATCTTGT
TTGGGCACCCCTTTCGTAGGTGCTGACGTTTTTTTTTTTCGGTTGTAATT
CCGTCGATGTTACGGGTCGAGACCGCTAACCGGCAACCAACTCTAACAAA
AAATCGATGGTGTGATGGTGTGATGGTGTGATGGTGTACACTGATAGGAA
TTATGAGGGGCATGGAAGAACGTCTACGTACGTACGTGCGTGCGTGCGTA
CGTACGTGATGATAGTAGTTGTTATACTTTGAGCTACACTCTCGCACTGC
GGCCATGTCGGCGTTTTCCACGGATTCTGTTGGGACTTGCAGAGCCCCAA
TCCACGTTTTGTTTTTCTTGATGATGGCCGCCTCGTCTTCCTCTCGCCTT
TTGGTTTATCTTATTTACCCACGCTCGTCTCGGAATATCTCTGAACATGT
GATATCGGGCCTCAAAATGCATGGAAGACGATCGATCCTCCAAAAACATG
GAAGATTGGAGAACTTAAGAATTGACTGTGCTCGGTTTTGTTCTGTTTTG
ATCCGTTTTTGTTTGATTGGTCTGATAAATGATGCCTGGTATGACGGACC
TCGCTATGCGTGACGATTCTCCCAAAGCATGAAGACCATGCAGTGCATGC
AGTACCTTATGTCTGGTAGGTTTCTGTCCTAGTTGTTTCTTGTCTTTTGT
TTCCTGTTTAGTTTTTTTTTTGTTGTACCATCAATATTATGTTTGCAATA
GGGAGCAGAACCCACGATGGACGCAAATCAAACATACCCGCCTATGTTTA
CTATTTCTGCACAACAATACCAGTATGTCCCCCTGTACTGTCAATGGTGA
CGGCCCTCGAAATGGACGGTTTACCATACAGGGCCTGCTGTCTGATGCCT
GCTGATGTTTTTGGTTTTTGTTCTGTTTGGCTGTTTTAGTTTTTTTGGTT
TCCTTTTTTATTTTTTTTCTTACGCGCTTGGTGCCTTGACGTCCGACGCG
GTTCTCTTTTCTCCCAGGACTGCGATGCGAACCCTTCTTGGCAAGAGACG
TTCACCTTCCGTAACGCCTCCAGCACGTGAGAACAACAACGCAACGCGGC
TCTCAAACGACCGCCGATCGCCGCACGCTATTCGCTACGTGGAGCTTTCG
TTTGTTCGTACAAGTAGGACGCGCGGATAGCTATTGGCTAGAGTTTTTTT
TTTTGTTTCTGCATGACACCAAGATAGCTACTGGCTGGATTTTTTTTTGT
TTTTGTTTCTGTAAGACGCTTAGATAAAGTCATATAGATACCTCCGTCCC
CGGCGGGTACTATTAATAGATACCTCCTTACCTTCGCCTCTTCAACCCTC
CCCCTCTTCGCCGATAGTTGACCGTTACAGAGTCTGTTCGAGTGGGAATG
CATGCGAACAAGAGGGGTGCACGTACAGGACTGTTTTTATGTTTGTTCGT
CACTTGAAATGCTCTGCACATCACCCAAACACGACACGGCTTTTAAGGAA
ATTCGCACGCTAAATTGATTGACCCCTTTGGGACTAATTGCAGTCCCGCT
TTGGGCGTAAAGTACGTATGGTTTGTCCCCGAGGCGGGACTGCAGTTAGT
TCTATGAGGGTTAAACCCGTGATAAATCCCATGGCCGACGAGGTTTATGT
GTAAAACGGAGTCTCAGTTTCGGTAATTGCAAATCTGTCTGTCTGTCTGT
CTGTCTGTCTGTCTGTCTGTCCGCGTGGATTATATTTTTTCGAACACGTT
CCAATGATCGATATGTAAAGGTCGATGTATGTGATATTCGTACGACGCAT
TCGACTCTTACGGACCTTACATACTGCTGCTGCTGTAGTGTACAAACAAA
CGATAAGGCGTCGAGGCATGCCTTGCTGGGGTGCCTGCTAATTCTTGCTG
GTAGTTCTTGCCGTACAAGCAAGGCATTGACCCCTTTGGGTGTGTACAGG
CAGCAAGCAGCGCCAGCGGCCAGAATTGCCGGTAGGGTCGTGTTGCACCC
TCTGTGTGTGTTCTTCACATCAAACCGTTTTTGCTATACCCGTCGGCATC
TATAGAGCAACAAGTGTCCCCGCCGATTTTTCAATCCTAGAGACATGGGA
GCTCTGTGGTCACAAACACTACACCACAGAGATACTGCATTGTTGCGCGG
TGAGCAGGGTAGGCGATGCGATGCCATATGTCATCATACTGGATACGACA
GACATGACGTACACATTCTATGAAAGAGAGAAAACAAGTGAAAAACGAAA
AAAACGCCAAATCGAAAAAGAAACGTGCCGTGCAGACGGCTCCTCGACAT
TGTAGCTACCGTAGGGCCAGCCACCAGTTTGTCTTCCCTCGATCACGCCT
TGACCGCTGCCGTAATGGTCAGTTTTTTTTCGTCAAGTTTCCCGCGAGGG
TTATAAGGCATGCGCCCTGTCGCAGTATGCGTCGCGGGTGTAACGGAAAC
GCAAGTAAAATGGACCTTGAGGCACACGTTGCCGCATGTGACGCAGGGCA
GCATGCCCTCCAGGACTCTCCGTGTGCGATACTGTATACCTGGTGTACGT
ATGTAAGCATAGATGAAGCAGGAAACGTGGTCGACACTGGATGTATCGCT
TTGAGAATGTGTGCATTCCACAGTAACTTGATTATCACGCCCCCCGAATT
ATTGGTTTCCCGTATATGCATACCAGTTTTACTTTGACTTTGACCCAACC
ACGACCCATATTACATTTTTATTTTTTCTATACCGATTTCAAGTAGTTCG
TCCGCGCAGAGTGCGCGCAGTTCTAAATGGGCTATTACTTTATCGAACCC
GTGGGAACCTCATAATTTGTGTATGTAAAGGTGTTTTTCCCACCTTAGTA
ATGTCTCCACAACCCCGGAAACCCTATGGTATGATTTCTGCAAAGCTATC
CCCGCCTTCGCCCTTCGACCACAGCAAAAATTATTTACGTAGTCTATTTT
TCTATTTTCGACTAGTAATATTAATGCAGTATTAATAGTTTCTCCCCAAA
AAGTGGGTGCAGTTCGAAGAGGGTTAGCAATGCACCCCCAACTCTGTGGA
AACCCATTAATAGTGCTTATGAGTAAAGCCATTACCGCCTTAACAACGCC
TCCCCAAACCCCGTGAAAACCCCATGTATAGCGACGGTCTGCAGATCTGC
CTGATGGAGAAGGAGGGGCCCAGGGAAGGCGTCGTGAGCGTGGGCAATTT
CATCCCTTCCTCCGCGTGGGGCTACCCTGGGATTGGGGGGGCGGATCATG
TGACCGAGATTAAGATGCCTGGCAACGGCAAGCCGGAGACGGAAATCATG
GGCACGATCATCTTGAAGCTTCAGTACCACGTGGAGGTGTGTGAAAGTCG
CATTCCGCTGTCTGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12983:162..4077-

>mRNA_M-pyrifera_M_contig12983.5808.1 ID=mRNA_M-pyrifera_M_contig12983.5808.1|Name=mRNA_M-pyrifera_M_contig12983.5808.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig12983:162..4077- (Macrocystis pyrifera P11B4 male)
CAGAACCTTGCGGTGTTCGGCACCTGCAACCCCTACGTCCTGGTGAAGCT
CAAGTCTTCGCTCGACAGCCTCACCACAGCCGTCAAGCAGAACCTTGCGG
TGTTCGGCACCTGCAACCCCTACGTCCTGGTGAAGCTCAAGTCTTCGCTC
GACAGCCTCACCACAGCCGTCAAGGACTGCGATGCGAACCCTTCTTGGCA
AGAGACGTTCACCTTCCGTAACGCCTCCAGCACGACTGCGATGCGAACCC
TTCTTGGCAAGAGACGTTCACCTTCCGTAACGCCTCCAGCACCGACGGTC
TGCAGATCTGCCTGATGGAGAAGGAGGGGCCCAGGGAAGGCGTCGTGAGC
GTGGGCAATTTCATCCCTTCCTCCGCGTGGGGCTACCCTGGGATTGGGGG
GGCGGATCATGTGACCGAGATTAAGATGCCTGGCAACGGCAAGCCGGAGA
CGGAAATCATGGGCACGATCATCTTGAAGCTTCAGTACCACGTGGAGGTG
TGTGAAAGTCGCATTCCGCTGTCTGTCCGACGGTCTGCAGATCTGCCTGA
TGGAGAAGGAGGGGCCCAGGGAAGGCGTCGTGAGCGTGGGCAATTTCATC
CCTTCCTCCGCGTGGGGCTACCCTGGGATTGGGGGGGCGGATCATGTGAC
CGAGATTAAGATGCCTGGCAACGGCAAGCCGGAGACGGAAATCATGGGCA
CGATCATCTTGAAGCTTCAGTACCACGTGGAGGTGTGTGAAAGTCGCATT
CCGCTGTCTGTC
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