mRNA_M-pyrifera_M_contig1292.5783.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1292.5783.1
Unique NamemRNA_M-pyrifera_M_contig1292.5783.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1292.5783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1292contigM-pyrifera_M_contig1292:1313..1972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size660
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1292.5783.1prot_M-pyrifera_M_contig1292.5783.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1292 1399..1908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.062738-UTR-M-pyrifera_M_contig1292:1312..13981622815802.062738-UTR-M-pyrifera_M_contig1292:1312..1398Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1292 1313..1398 +
1692277576.5248377-UTR-M-pyrifera_M_contig1292:1312..13981692277576.5248377-UTR-M-pyrifera_M_contig1292:1312..1398Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1292 1313..1398 +
1622815802.0865805-UTR-M-pyrifera_M_contig1292:1908..19721622815802.0865805-UTR-M-pyrifera_M_contig1292:1908..1972Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1292 1909..1972 +
1692277576.5407264-UTR-M-pyrifera_M_contig1292:1908..19721692277576.5407264-UTR-M-pyrifera_M_contig1292:1908..1972Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1292 1909..1972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.0741577-CDS-M-pyrifera_M_contig1292:1398..19081622815802.0741577-CDS-M-pyrifera_M_contig1292:1398..1908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1292 1399..1908 +
1692277576.5331054-CDS-M-pyrifera_M_contig1292:1398..19081692277576.5331054-CDS-M-pyrifera_M_contig1292:1398..1908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1292 1399..1908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1292.5783.1

>prot_M-pyrifera_M_contig1292.5783.1 ID=prot_M-pyrifera_M_contig1292.5783.1|Name=mRNA_M-pyrifera_M_contig1292.5783.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MRCIKCSSSTLKVPPDTLLYVGIRCTTRRASASVCLDGASVGLDGVHDVH
GQESVPKVDRQRKHAITTHGTREIICIGGGIVLSCHFLTYTSPEPWTLRH
RSALFSVGALRNINTLKHGYVCVRSRQGSPTISGKVHYAGLAQATETLLW
GQLAAVDGAAGNDTRMINV*
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mRNA from alignment at M-pyrifera_M_contig1292:1313..1972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1292.5783.1 ID=mRNA_M-pyrifera_M_contig1292.5783.1|Name=mRNA_M-pyrifera_M_contig1292.5783.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig1292:1313..1972+ (Macrocystis pyrifera P11B4 male)
GACGGATTTTAGAAACTGACTGTCCGTGTATAGGTATTCTTACAATATCG
TTTTCTTTTGTACTAGTCATTTTTTTGGAGTGTATCATGCGATGCATAAA
GTGCAGCAGTAGTACTCTCAAAGTCCCGCCTGATACACTATTGTACGTGG
GAATTCGATGTACCACCAGAAGGGCTTCTGCTTCCGTGTGTCTTGATGGT
GCTTCGGTGGGGCTTGATGGTGTTCATGATGTTCATGGTCAAGAATCTGT
GCCGAAAGTAGACCGTCAGCGGAAACACGCAATAACCACGCATGGAACCC
GCGAGATCATATGCATTGGGGGCGGGATTGTTTTATCTTGCCACTTTCTT
ACTTATACTAGCCCAGAACCGTGGACGTTGCGACATAGGTCAGCTTTATT
TAGCGTTGGTGCCCTCCGGAATATAAATACGCTAAAGCATGGGTACGTTT
GCGTTCGTAGTCGTCAGGGCAGCCCAACTATATCCGGCAAGGTACACTAT
GCAGGGCTGGCCCAAGCAACAGAAACACTGCTTTGGGGACAGCTCGCTGC
AGTGGATGGAGCGGCTGGCAATGATACGAGAATGATCAACGTCTAGCAAC
CGATAATACACGTTCGAGCTAGCGGCTGCTTGTGAACGAAACTGATGCGA
TGTACCAGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1292:1313..1972+

>mRNA_M-pyrifera_M_contig1292.5783.1 ID=mRNA_M-pyrifera_M_contig1292.5783.1|Name=mRNA_M-pyrifera_M_contig1292.5783.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig1292:1313..1972+ (Macrocystis pyrifera P11B4 male)
ATGCGATGCATAAAGTGCAGCAGTAGTACTCTCAAAGTCCCGCCTGATAC
ACTATTGTACGTGGGAATTCGATGTACCACCAGAAGGGCTTCTGCTTCCG
TGTGTCTTGATGGTGCTTCGGTGGGGCTTGATGGTGTTCATGATGTTCAT
GGTCAAGAATCTGTGCCGAAAGTAGACCGTCAGCGGAAACACGCAATAAC
CACGCATGGAACCCGCGAGATCATATGCATTGGGGGCGGGATTGTTTTAT
CTTGCCACTTTCTTACTTATACTAGCCCAGAACCGTGGACGTTGCGACAT
AGGTCAGCTTTATTTAGCGTTGGTGCCCTCCGGAATATAAATACGCTAAA
GCATGGGTACGTTTGCGTTCGTAGTCGTCAGGGCAGCCCAACTATATCCG
GCAAGGTACACTATGCAGGGCTGGCCCAAGCAACAGAAACACTGCTTTGG
GGACAGCTCGCTGCAGTGGATGGAGCGGCTGGCAATGATACGAGAATGAT
CAACGTCTAGATGCGATGCATAAAGTGCAGCAGTAGTACTCTCAAAGTCC
CGCCTGATACACTATTGTACGTGGGAATTCGATGTACCACCAGAAGGGCT
TCTGCTTCCGTGTGTCTTGATGGTGCTTCGGTGGGGCTTGATGGTGTTCA
TGATGTTCATGGTCAAGAATCTGTGCCGAAAGTAGACCGTCAGCGGAAAC
ACGCAATAACCACGCATGGAACCCGCGAGATCATATGCATTGGGGGCGGG
ATTGTTTTATCTTGCCACTTTCTTACTTATACTAGCCCAGAACCGTGGAC
GTTGCGACATAGGTCAGCTTTATTTAGCGTTGGTGCCCTCCGGAATATAA
ATACGCTAAAGCATGGGTACGTTTGCGTTCGTAGTCGTCAGGGCAGCCCA
ACTATATCCGGCAAGGTACACTATGCAGGGCTGGCCCAAGCAACAGAAAC
ACTGCTTTGGGGACAGCTCGCTGCAGTGGATGGAGCGGCTGGCAATGATA
CGAGAATGATCAACGTCTAG
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