mRNA_M-pyrifera_M_contig12909.5780.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12909.5780.1
Unique NamemRNA_M-pyrifera_M_contig12909.5780.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.890e-50
Identity = 77/92 (83.70%), Postives = 87/92 (94.57%), Query Frame = 1
Query:    1 LALVAFVEGQTILNAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGIVEHVLTQI 276
            L ++AF+EGQTI +AWGTVSPVTGVGNLK EYYPGDLGFDPLGLAPKDG+DFRLIQSQELDLGRYAMIGVLGMI QE VDGKGI+EH++++I
Sbjct:  140 LGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231          
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: A0A6H5JVV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.220e-21
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   10 VAFVEGQTILNAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGI 252
            +AF+E  TI+ A+ T S VTG G LKE+Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+AQE V+  GI
Sbjct:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPAGI 81          
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: A0A6H5JG14_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG14_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.730e-21
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   10 VAFVEGQTILNAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGI 252
            +AF+E  TI  A+   SPVTG G L+EEY PGDLGFDPL L PKD      +Q++EL+ GR AMIG+ GM+ QE V+   I
Sbjct:    1 MAFIEYNTITKAYAEPSPVTGEGGLREEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADI 81          
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: A0A6S9I6N1_HETAK (Hypothetical protein n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I6N1_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 1.420e-20
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 LALVAFVEGQTILNAWGTVSPVTG--VGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVD 240
            L  +A +EGQTIL AW +V   +G  V +LK +Y PGDLGFDPLGL P D ++ ++++++EL+ GR AMIGV GM+ QE V 
Sbjct:  119 LFFIALIEGQTILTAWDSVKEASGKAVSDLKADYIPGDLGFDPLGLKPADEEELKVMKTKELNNGRLAMIGVAGMLVQELVS 200          
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: A0A7S2EH28_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EH28_TRICV)

HSP 1 Score: 90.1 bits (222), Expect = 2.140e-20
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   58 SPVTGVGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGIVEH 261
            +PV   G LK +Y PGDLGFDPLGL P+D ++FR++Q++EL  GR AM+   G +AQE VDGKGI+EH
Sbjct:  140 TPVDQPGLLKADYIPGDLGFDPLGLKPEDPEEFRIMQTKELQNGRLAMLAAAGFLAQEAVDGKGIIEH 207          
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: A0A6U2BSD9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2BSD9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.430e-20
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   58 SPVTGVGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGIVEH 261
            +PV   G L+ +Y PGDLGFDPLGL P+D ++FR++Q++EL  GR AMI   G +AQE VDGKGI+EH
Sbjct:  141 TPVDQPGLLRADYTPGDLGFDPLGLKPEDPEEFRIMQTKELQNGRLAMIAAAGFLAQEAVDGKGIIEH 208          
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 5.170e-20
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   10 VAFVEGQTILNAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGI 252
            +AF+E  TI+ A+ T S VTG G LKE+Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+AQE V+   I
Sbjct:   49 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADI 129          
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 7.070e-20
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   10 VAFVEGQTILNAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGI 252
            +AF+E  TI  A+   SPVTG G L++EY PGDLGFDP  + PKD      +Q++EL+ GR AMIG++GM+ QE V+G+ I
Sbjct:  136 MAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDI 216          
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 7.970e-20
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   10 VAFVEGQTILNAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGIVEH 261
            +AF+E  TI+ A+ T S VTG G LKE+Y PGDLGFDPL L P       +++++EL+ GR AMIG+ GM+AQE V+G+ I+ +
Sbjct:  138 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPN 221          
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Match: A0A7S3VGX6_DUNTE (Chlorophyll a-b binding protein, chloroplastic n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3VGX6_DUNTE)

HSP 1 Score: 85.5 bits (210), Expect = 8.860e-20
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   58 SPVTGVGNLKEEYYPGDLGFDPLGLAPKDGDDFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGIVEH 261
            +PV   G L+ +Y PGDLGFDPLGL P+D ++F ++Q++EL  GR AM+   G +AQE VDGKGI+EH
Sbjct:   29 APVDQPGLLRADYTPGDLGFDPLGLKPEDPEEFVIMQTKELQHGRLAMLAAAGFLAQEAVDGKGIIEH 96          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12909.5780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQG7_ECTSI1.890e-5083.70Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6H5JVV6_9PHAE1.220e-2154.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG14_9PHAE1.730e-2154.32LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6S9I6N1_HETAK1.420e-2052.44Hypothetical protein n=6 Tax=Heterosigma akashiwo ... [more]
A0A7S2EH28_TRICV2.140e-2058.82Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A6U2BSD9_9STRA4.430e-2058.82Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6H5JVY1_9PHAE5.170e-2053.09LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7S0_ECTSI7.070e-2051.85Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI7.970e-2051.19Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7S3VGX6_DUNTE8.860e-2055.88Chlorophyll a-b binding protein, chloroplastic n=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12909contigM-pyrifera_M_contig12909:2272..2550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog2880.D7FQG7
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size281
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815801.771024-CDS-M-pyrifera_M_contig12909:2271..25501622815801.771024-CDS-M-pyrifera_M_contig12909:2271..2550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12909 2272..2550 +
1692277576.3595195-CDS-M-pyrifera_M_contig12909:2271..25501692277576.3595195-CDS-M-pyrifera_M_contig12909:2271..2550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12909 2272..2550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12909.5780.1prot_M-pyrifera_M_contig12909.5780.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12909 2272..2550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12909.5780.1

>prot_M-pyrifera_M_contig12909.5780.1 ID=prot_M-pyrifera_M_contig12909.5780.1|Name=mRNA_M-pyrifera_M_contig12909.5780.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
LALVAFVEGQTILNAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGD
DFRLIQSQELDLGRYAMIGVLGMIAQECVDGKGIVEHVLTQI*
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mRNA from alignment at M-pyrifera_M_contig12909:2272..2550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12909.5780.1 ID=mRNA_M-pyrifera_M_contig12909.5780.1|Name=mRNA_M-pyrifera_M_contig12909.5780.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig12909:2272..2550+ (Macrocystis pyrifera P11B4 male)
CTGGCGCTTGTAGCCTTCGTCGAGGGTCAAACCATCCTCAACGCCTGGGG TACCGTGAGCCCCGTAACAGGCGTGGGAAACCTCAAGGAAGAGTACTACC CGGGAGACCTCGGGTTCGACCCTCTGGGGCTCGCCCCTAAGGACGGGGAC GACTTTAGATTGATCCAGTCGCAGGAGTTGGACCTCGGGCGATACGCGAT GATCGGAGTGTTGGGCATGATTGCTCAGGAGTGCGTGGACGGAAAGGGCA TCGTTGAGCACGTCTTGACTCAAATATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12909:2272..2550+

>mRNA_M-pyrifera_M_contig12909.5780.1 ID=mRNA_M-pyrifera_M_contig12909.5780.1|Name=mRNA_M-pyrifera_M_contig12909.5780.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig12909:2272..2550+ (Macrocystis pyrifera P11B4 male)
CTGGCGCTTGTAGCCTTCGTCGAGGGTCAAACCATCCTCAACGCCTGGGG
TACCGTGAGCCCCGTAACAGGCGTGGGAAACCTCAAGGAAGAGTACTACC
CGGGAGACCTCGGGTTCGACCCTCTGGGGCTCGCCCCTAAGGACGGGGAC
GACTTTAGATTGATCCAGTCGCAGGAGTTGGACCTCGGGCGATACGCGAT
GATCGGAGTGTTGGGCATGATTGCTCAGGAGTGCGTGGACGGAAAGGGCA
TCGTTGAGCACGTCTTGACTCAAATATGACTGGCGCTTGTAGCCTTCGTC
GAGGGTCAAACCATCCTCAACGCCTGGGGTACCGTGAGCCCCGTAACAGG
CGTGGGAAACCTCAAGGAAGAGTACTACCCGGGAGACCTCGGGTTCGACC
CTCTGGGGCTCGCCCCTAAGGACGGGGACGACTTTAGATTGATCCAGTCG
CAGGAGTTGGACCTCGGGCGATACGCGATGATCGGAGTGTTGGGCATGAT
TGCTCAGGAGTGCGTGGACGGAAAGGGCATCGTTGAGCACGTCTTGACTC
AAATATGA
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