mRNA_M-pyrifera_M_contig12873.5767.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12873.5767.1
Unique NamemRNA_M-pyrifera_M_contig12873.5767.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: A0A6H5KGP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP7_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 5.780e-65
Identity = 91/115 (79.13%), Postives = 102/115 (88.70%), Query Frame = 1 
Query:    7 ESDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRGPMSRWHAFIDLCVAHHLPAGGRVTGWVS 351
            ES VLEIG+G GYSADRIQEFSPRSHT++EPDP+VL RL+GWA  RPGVR+VEGFWQTAL  LG + AVFFDDFPLP TPDSSDLRGP SRWHAFIDLC AHHLP GGR+TG+++
Sbjct:   31 ESRVLEIGYGIGYSADRIQEFSPRSHTIIEPDPVVLARLRGWAAARPGVRIVEGFWQTALATLGEFDAVFFDDFPLPDTPDSSDLRGPASRWHAFIDLCAAHHLPVGGRITGYLA 145
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: D7G1B4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B4_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 7.520e-65
Identity = 91/112 (81.25%), Postives = 99/112 (88.39%), Query Frame = 1 
Query:    7 ESDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRGPMSRWHAFIDLCVAHHLPAGGRVTG 342
            ES VLEIG+G GYSADRIQEFSPRSHT++EPDP+VL RL+GWA  RPGVR+VEGFWQTAL  LG + AVFFDDFPLP TPDSSDLRGP SRWHAFIDLC AHHLP GGR+TG
Sbjct:  106 ESRVLEIGYGIGYSADRIQEFSPRSHTIIEPDPVVLARLRGWAAARPGVRIVEGFWQTALATLGEFDAVFFDDFPLPDTPDSSDLRGPASRWHAFIDLCAAHHLPVGGRITG 217
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: A0A6G0WAM0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAM0_9STRA)

HSP 1 Score: 136 bits (343), Expect = 8.110e-36
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    1 SGESDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRGPMSRWHAFIDLCVAHHLPAGGRVTGWVS 351
            S  SDVLEIGFG  YSA+RIQ + P SHT++E DP+ L +L+ WA  RP VRVV G WQ  L +LG +  +FFDD+PLP T     +   +SRWH F+DL +  H   GGRVTG+++
Sbjct:   47 SSSSDVLEIGFGLAYSANRIQSYQPHSHTIIECDPVSLKQLRAWATTRPNVRVVAGTWQNMLASLGEFDCIFFDDYPLPQTERDESIFS-ISRWHEFLDLVLNWHTKLGGRVTGYLA 162
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: W4FW55_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FW55_9STRA)

HSP 1 Score: 130 bits (326), Expect = 6.210e-34
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:   10 SDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRGPMSRWHAFIDLCVAHHLPAGGRVTGWVS 351
            SDVLEIGFG  YSA  IQ +SP+SHT++E DP+ L  L+ WA+ RP V +V G WQT L +LG +  +FFDD+PLP T     +   +SRWH F+D  +  H+  GGRVTG+++
Sbjct:   48 SDVLEIGFGLAYSATHIQSYSPKSHTIIECDPVSLVELEVWAKTRPNVVIVAGTWQTVLASLGSFDCIFFDDYPLPQTERDESIFS-ISRWHDFLDATLNWHVNVGGRVTGYLA 160
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: W4FTU6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FTU6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.930e-33
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:   10 SDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRGPMSRWHAFIDLCVAHHLPAGGRVTGWVS 351
            SDVLEIGFG  YSA  IQ +SP+SHT++E DP+ L  L+ WA+ RP V +V G WQT L +LG +  +FFDD+PLP T     +   +SRWH F+D  +  H+  GGRVTG+++
Sbjct:   48 SDVLEIGFGLAYSATHIQSYSPKSHTIIECDPVSLVELEVWAKTRPNVVIVAGTWQTVLASLGSFDCIFFDDYPLPQTERDESIFS-ISRWHDFLDATLNWHVNVGGRVTGYLA 160
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: A0A485KL38_9STRA (Aste57867_8776 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL38_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.450e-33
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:   13 DVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRGPMSRWHAFIDLCVAHHLPAGGRVTGWVS 351
            DVLEIGFG GYSA RIQ F+PRSHT++E DP+ L +L+ WA  R  V +V G WQ+ L +LG +  +FFDD+PLP       +   +SRWH F+D  +  H   GGRVTG+++
Sbjct:   48 DVLEIGFGLGYSASRIQSFAPRSHTIIECDPVCLKQLEAWAADRKNVTIVAGTWQSMLASLGAFDCIFFDDYPLPQMERDESIFS-ISRWHEFLDATLNWHTNLGGRVTGYLA 159
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: T0QRP7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QRP7_SAPDV)

HSP 1 Score: 128 bits (322), Expect = 9.840e-33
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:   10 SDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRGPMSRWHAFIDLCVAHHLPAGGRVTGWVS 351
            SDVLEIGFG GYSA +I  +SP+++T++E DP+V+ R+K WA     VR+V G WQT LPAL  +  +FFDD+PLP   +  D    +SRW+ F+DL +  H    GR+TG+++
Sbjct:   47 SDVLEIGFGLGYSATKIMTYSPKTYTIIECDPVVIARIKAWATSYSNVRIVHGAWQTQLPALPAFDCIFFDDYPLPQN-ERDDANHTISRWYEFLDLALNWHTKLHGRITGYLA 159
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: A0A024TBP2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBP2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 6.350e-32
Identity = 55/114 (48.25%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   10 SDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRGPMSRWHAFIDLCVAHHLPAGGRVTGWVS 351
            +DVLEIGFG  YSA RIQ ++P+SHT++E DP+    L+ W++ R  V  V G WQ+ LP+LG +  VFFDD+PLP       +   +SRWH F+DL +  H+  GGRVTG+++
Sbjct:   51 TDVLEIGFGLAYSATRIQSYNPKSHTIIECDPVSFAALQAWSKSRANVVAVPGSWQSMLPSLGAFDCVFFDDYPLPPIERDESMYS-LSRWHDFLDLALNWHVHVGGRVTGYLA 163
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: A0A812X2Q9_9DINO (Gamt protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812X2Q9_9DINO)

HSP 1 Score: 129 bits (323), Expect = 8.790e-31
Identity = 59/126 (46.83%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:    7 ESDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRG------------PMSRWHAFIDLCVAHHLPAGGRVTGWV 348
            ++DVLE+GFGCGYSA RIQEF PRSHT++E   +VL+RLK WA  +P V +VEG WQ  LP LGR+  +FFDD+  PG  D    +               S +HAF++L    H   G RV+G++
Sbjct:  188 DTDVLEVGFGCGYSASRIQEFKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQQRLPELGRFDRIFFDDYGQPGISDKEMFQNCPNEQYKDIYDESQSHFHAFLNLAFQFHSRNGTRVSGYL 313
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BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Match: A0A812J552_9DINO (Gamt protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812J552_9DINO)

HSP 1 Score: 129 bits (323), Expect = 9.760e-31
Identity = 59/126 (46.83%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:    7 ESDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPGVRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRG------------PMSRWHAFIDLCVAHHLPAGGRVTGWV 348
            ++DVLE+GFGCGYSA RIQEF PRSHT++E   +VL+RLK WA  +P V +VEG WQ  LP LGR+  +FFDD+  PG  D    +               S +HAF++L    H   G RV+G++
Sbjct: 2321 DTDVLEVGFGCGYSASRIQEFKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQQRLPELGRFDRIFFDDYGQPGISDKEMFQNCPNEQYKDIYDESQSHFHAFLNLAFQFHSRNGTRVSGYL 2446
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12873.5767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGP7_9PHAE5.780e-6579.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1B4_ECTSI7.520e-6581.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0WAM0_9STRA8.110e-3652.14Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4FW55_9STRA6.210e-3450.88Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FTU6_9STRA3.930e-3350.88Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A485KL38_9STRA5.450e-3350.44Aste57867_8776 protein n=1 Tax=Aphanomyces stellat... [more]
T0QRP7_SAPDV9.840e-3348.25Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024TBP2_9STRA6.350e-3248.25Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A812X2Q9_9DINO8.790e-3146.83Gamt protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
A0A812J552_9DINO9.760e-3146.83Gamt protein n=1 Tax=Symbiodinium necroappetens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12873contigM-pyrifera_M_contig12873:917..2052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.9
Seed ortholog evalue8.2e-52
Seed eggNOG ortholog2880.D7G1B4
KEGG rclassRC00003,RC00614
KEGG koko:K00542
KEGG ReactionR01883
KEGG Pathwayko00260,ko00330,ko01100,map00260,map00330,map01100
KEGG ModuleM00047
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-arginine N5-methyltransferase activity
EggNOG OGsKOG1709@1,KOG1709@2759
EC2.1.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size636
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12873.5767.1prot_M-pyrifera_M_contig12873.5767.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12873 917..1869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815800.0267477-CDS-M-pyrifera_M_contig12873:916..11471622815800.0267477-CDS-M-pyrifera_M_contig12873:916..1147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12873 917..1147 +
1692277575.1023796-CDS-M-pyrifera_M_contig12873:916..11471692277575.1023796-CDS-M-pyrifera_M_contig12873:916..1147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12873 917..1147 +
1622815800.0367932-CDS-M-pyrifera_M_contig12873:1647..18691622815800.0367932-CDS-M-pyrifera_M_contig12873:1647..1869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12873 1648..1869 +
1692277575.115208-CDS-M-pyrifera_M_contig12873:1647..18691692277575.115208-CDS-M-pyrifera_M_contig12873:1647..1869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12873 1648..1869 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815800.0504851-UTR-M-pyrifera_M_contig12873:1869..20521622815800.0504851-UTR-M-pyrifera_M_contig12873:1869..2052Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12873 1870..2052 +
1692277575.1254056-UTR-M-pyrifera_M_contig12873:1869..20521692277575.1254056-UTR-M-pyrifera_M_contig12873:1869..2052Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12873 1870..2052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12873.5767.1

>prot_M-pyrifera_M_contig12873.5767.1 ID=prot_M-pyrifera_M_contig12873.5767.1|Name=mRNA_M-pyrifera_M_contig12873.5767.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
SGESDVLEIGFGCGYSADRIQEFSPRSHTVVEPDPIVLDRLKGWAEGRPG
VRVVEGFWQTALPALGRYHAVFFDDFPLPGTPDSSDLRGPMSRWHAFIDL
CVAHHLPAGGRVTGWVSYAAIYYILVLFSFLPFWTILRAACARPRDKAPS
*
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mRNA from alignment at M-pyrifera_M_contig12873:917..2052+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12873.5767.1 ID=mRNA_M-pyrifera_M_contig12873.5767.1|Name=mRNA_M-pyrifera_M_contig12873.5767.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1136bp|location=Sequence derived from alignment at M-pyrifera_M_contig12873:917..2052+ (Macrocystis pyrifera P11B4 male)
TCAGGGGAAAGCGACGTCCTCGAGATAGGCTTCGGGTGCGGCTACTCAGC
CGATAGAATCCAGGAGTTCTCGCCGCGCTCCCACACCGTGGTGGAACCTG
ACCCGATCGTACTCGATCGGTTGAAGGGGTGGGCAGAGGGTCGCCCCGGA
GTCCGAGTGGTGGAGGGGTTCTGGCAGACAGCTCTGCCGGCGCTGGGAAG
ATACCACGCAGTGTTTTTCGACGACTTCCCTGTGAGTCTTTCCCTACTAT
GTTTTTCCTTTGTCGTTGTTGTTGTCGTTGTCGGTGTTAAAGTTCTCGTT
CATCATCGCCTTAGTTTTGTTTTATCGTTAATTTTTCCGTTTGGGGTGCG
TGGAGCTGGGCTGCCAAAAAACATTTGTTTTTGCGCTGCAGCTGAATGCG
CAACTCGCAACCAGGAGCGCGTCATGGCCTGACCACGATCAGCAACAGCA
GCAGCATCAGAAGCCGAAGGCAGCGATCGCACTTTGACCGAAGATAGCGC
GAGGCTCGCGACAGCTCCGAACCAAGGAGGAGCCGCCGTACAGTCAGTAG
TGGATTCGTACCATCGTTCGCGAGGTGAAATTCAAAGGACGTCATTTGCA
GCCTTTCGGTGTGGTATCCAGCCACGCTCTTTTATCCTCGTTCTGCGGCA
AGTGGAATGCACTTTAGCTTTTTCCTGCACAATTAACACCACTCCGCACC
GCCGCCTTTTCCTCTCCCTCCGTCTGGGCAGTTGCCGGGTACACCGGATT
CGTCGGACCTGAGAGGGCCCATGTCGCGATGGCACGCCTTCATAGACTTG
TGCGTTGCCCACCATCTTCCTGCGGGCGGTCGAGTAACAGGGTGGGTATC
GTACGCGGCGATTTACTATATTTTGGTTTTGTTTTCGTTTCTCCCCTTCT
GGACGATTTTGAGAGCTGCTTGTGCGCGGCCCAGAGACAAAGCCCCTTCA
TAGACTTGTGCGTTGCCCACCATCTTCCTGCGGGCGGTCGAGTAACAGGG
TGGGTATCGTACGCGGCGATTTACTATATTTTGGTTTTGTTTTCGTTTCT
CCAGTTCTGGACGATTTTGAGAGCTGCTTGTGCGGGGCCCAGAGACAAAG
CCCATCCCTCTGGAAGAAGAAATGAAGGTCCGCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12873:917..2052+

>mRNA_M-pyrifera_M_contig12873.5767.1 ID=mRNA_M-pyrifera_M_contig12873.5767.1|Name=mRNA_M-pyrifera_M_contig12873.5767.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig12873:917..2052+ (Macrocystis pyrifera P11B4 male)
TCAGGGGAAAGCGACGTCCTCGAGATAGGCTTCGGGTGCGGCTACTCAGC
CGATAGAATCCAGGAGTTCTCGCCGCGCTCCCACACCGTGGTGGAACCTG
ACCCGATCGTACTCGATCGGTTGAAGGGGTGGGCAGAGGGTCGCCCCGGA
GTCCGAGTGGTGGAGGGGTTCTGGCAGACAGCTCTGCCGGCGCTGGGAAG
ATACCACGCAGTGTTTTTCGACGACTTCCCTTCAGGGGAAAGCGACGTCC
TCGAGATAGGCTTCGGGTGCGGCTACTCAGCCGATAGAATCCAGGAGTTC
TCGCCGCGCTCCCACACCGTGGTGGAACCTGACCCGATCGTACTCGATCG
GTTGAAGGGGTGGGCAGAGGGTCGCCCCGGAGTCCGAGTGGTGGAGGGGT
TCTGGCAGACAGCTCTGCCGGCGCTGGGAAGATACCACGCAGTGTTTTTC
GACGACTTCCCTTTGCCGGGTACACCGGATTCGTCGGACCTGAGAGGGCC
CATGTCGCGATGGCACGCCTTCATAGACTTGTGCGTTGCCCACCATCTTC
CTGCGGGCGGTCGAGTAACAGGGTGGGTATCGTACGCGGCGATTTACTAT
ATTTTGGTTTTGTTTTCGTTTCTCCCCTTCTGGACGATTTTGAGAGCTGC
TTGTGCGCGGCCCAGAGACAAAGCCCCTTCATAGTTGCCGGGTACACCGG
ATTCGTCGGACCTGAGAGGGCCCATGTCGCGATGGCACGCCTTCATAGAC
TTGTGCGTTGCCCACCATCTTCCTGCGGGCGGTCGAGTAACAGGGTGGGT
ATCGTACGCGGCGATTTACTATATTTTGGTTTTGTTTTCGTTTCTCCCCT
TCTGGACGATTTTGAGAGCTGCTTGTGCGCGGCCCAGAGACAAAGCCCCT
TCATAG
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