mRNA_M-pyrifera_M_contig128696.5766.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128696.5766.1
Unique NamemRNA_M-pyrifera_M_contig128696.5766.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: A0A7R9VM74_9STRA (Protein transport protein SEC23 (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VM74_9STRA)

HSP 1 Score: 226 bits (577), Expect = 4.190e-72
Identity = 106/166 (63.86%), Postives = 135/166 (81.33%), Query Frame = 1 
Query:    1 LMSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAPQ 498
            L +R+AVHR  + E+  D+LRW+DR+LIRLCS+FA YRPDDP SF LA   S++PQF++HLRRS F+Q  N SPDE  Y R V   E+ +NS++MIQP+LL+YSF+GPP P LLDA S+RPDVILLLD+FFHV+V+ GET+A+WREQRY ++ EH +FRALLEAPQ
Sbjct:   86 LTARLAVHRT-ESEDVADVLRWVDRSLIRLCSKFADYRPDDPSSFRLAQQFSLYPQFMFHLRRSQFLQLFNSSPDEACYYRYVLSRENVTNSLVMIQPTLLSYSFSGPPAPALLDAQSVRPDVILLLDTFFHVVVFHGETVAAWREQRYHEQEEHASFRALLEAPQ 250
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: A0A7S2I581_9STRA (Protein transport protein SEC23 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I581_9STRA)

HSP 1 Score: 224 bits (572), Expect = 7.080e-70
Identity = 105/166 (63.25%), Postives = 134/166 (80.72%), Query Frame = 1 
Query:    1 LMSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAPQ 498
            L +R+AVHR  + E+  D+LRW+DR+LIRLC++FA YRPDDP SF L+   S++PQF++HLRRS F+Q  N SPDE  Y R V   E+T+NS++MIQP+LL+YSF GPPQP LLDA S+RPD ILLLD+FFHV+V+ GETIA+WREQ+Y ++ EH AFR LLEAPQ
Sbjct:  141 LTARVAVHRT-ESEDVADVLRWVDRSLIRLCTKFADYRPDDPNSFRLSHEFSLYPQFMFHLRRSQFLQLFNSSPDEAAYYRYVLTRENTTNSLVMIQPTLLSYSFNGPPQPALLDAQSVRPDTILLLDTFFHVVVFHGETIAAWREQKYHEQEEHAAFRDLLEAPQ 305
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: A0A7S2JSI2_9STRA (Protein transport protein SEC23 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSI2_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.030e-67
Identity = 103/166 (62.05%), Postives = 133/166 (80.12%), Query Frame = 1 
Query:    1 LMSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAPQ 498
            L +R+AVHR  + E+ GD+L W+DR+LIRL ++FA YRPDDP SF L    SI+PQF++HLRRSPF+Q  N SPDE +Y R +   E+TSNS++MIQP+LL+YSF GPPQP LLD+ S+RPD ILLLD+FFHV+V+ GETIA+WRE +Y ++ EH +FR LLEAPQ
Sbjct:  199 LTARLAVHRT-ETEDVGDVLMWVDRSLIRLAAKFADYRPDDPSSFRLPHAFSIYPQFMFHLRRSPFLQLFNSSPDEASYYRYILSRENTSNSLVMIQPTLLSYSFNGPPQPTLLDSQSVRPDTILLLDTFFHVVVFHGETIAAWREMKYHEQEEHASFRQLLEAPQ 363
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: A0A813C4E1_9DINO (Protein transport protein SEC23 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C4E1_9DINO)

HSP 1 Score: 214 bits (546), Expect = 3.140e-67
Identity = 102/166 (61.45%), Postives = 129/166 (77.71%), Query Frame = 1 
Query:    1 LMSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAPQ 498
            LM+R+AV+R  ++EEP  + RWLDR+LIRLCS+FA Y  D P SF L    SIFPQFL++ RRS F++  N SPDET Y RL+FL E  SNS++M+QPSL+AY F GPP PVLLD AS++PDVILLLD+FF V+V+ GETIA WR+  YQ++PE+  F+ LLEAPQ
Sbjct:   40 LMARVAVYRT-EEEEPAAVSRWLDRSLIRLCSRFADYTKDQPSSFRLDSNFSIFPQFLFNFRRSQFMRTFNASPDETAYNRLIFLKESVSNSLVMMQPSLIAYGFNGPPSPVLLDVASVKPDVILLLDTFFQVVVFHGETIAQWRDAGYQEKPEYSNFKTLLEAPQ 204
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: A0A5A8D4Z4_CAFRO (Protein transport protein SEC23 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D4Z4_CAFRO)

HSP 1 Score: 227 bits (579), Expect = 3.200e-67
Identity = 109/166 (65.66%), Postives = 128/166 (77.11%), Query Frame = 1 
Query:    1 LMSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAPQ 498
            LM+RIA  R    E PGDIL+WLDR+LIRLCS FA++ PD P SF L  T SIFPQF+YHLRRS F+QP   SPDET Y R V   ED SNS++MIQPSL++YSF+ PP PVLLD +S+ PDVILLLD+FF V+VW G TIA+WREQ YQDRPEH  F+ LL AP+
Sbjct:  554 LMARIATDRTAT-EPPGDILQWLDRSLIRLCSHFASFTPDSPSSFDLGSTFSIFPQFMYHLRRSQFIQPGTHSPDETIYFRSVLCREDVSNSIVMIQPSLISYSFSAPPTPVLLDTSSICPDVILLLDTFFTVVVWRGSTIAAWREQGYQDRPEHEGFKHLLRAPE 718
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: A0A7S2CH11_9STRA (Protein transport protein SEC23 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH11_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.000e-66
Identity = 105/166 (63.25%), Postives = 130/166 (78.31%), Query Frame = 1 
Query:    1 LMSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAPQ 498
            LM+RIA HR   +E P DILRW+DR+LIRLCS+FA YR DDPGSF L+   +++PQF++HLRRS F+Q  N SPDE+ Y R V + E+T+NS++MIQPSLL+YSF G P PVLLDAAS+ PD ILLLD+FFHV+V+ GE IA WR+Q YQD  EH  F+ LL APQ
Sbjct:   22 LMARIATHRTETEEVP-DILRWVDRSLIRLCSKFADYRKDDPGSFRLSQEFAMYPQFMFHLRRSQFLQLFNTSPDESAYYRSVLVRENTTNSLVMIQPSLLSYSFQGTPSPVLLDAASVSPDTILLLDTFFHVVVFHGEKIAMWRDQGYQDHEEHIHFKNLLIAPQ 186
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: A0A812TWJ3_SYMMI (Protein transport protein SEC23 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TWJ3_SYMMI)

HSP 1 Score: 211 bits (538), Expect = 1.430e-66
Identity = 102/165 (61.82%), Postives = 130/165 (78.79%), Query Frame = 1 
Query:    4 MSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAPQ 498
            MSR+A+ R+ + +   D++RWLDRA+IRL S+FA+YR DDP SF L P  SI+PQF++HLRRS F+Q  N SPDE    R +   E TSNS++M+QPSLL+YSF GPPQPVLLDAAS+RPD ILLLD+FFHV+V+ GETIA+W++Q YQ + EH  F+ LLEAPQ
Sbjct:    1 MSRLAIQRS-ETKAVSDVMRWLDRAMIRLASKFASYRKDDPSSFRLPPEFSIYPQFMFHLRRSKFLQNFNSSPDEQAVYRHILTRECTSNSLIMLQPSLLSYSFQGPPQPVLLDAASVRPDTILLLDTFFHVVVFLGETIAAWKQQGYQHQEEHINFKNLLEAPQ 164
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: A0A812VFA3_9DINO (Protein transport protein SEC23 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VFA3_9DINO)

HSP 1 Score: 224 bits (572), Expect = 2.020e-66
Identity = 110/166 (66.27%), Postives = 133/166 (80.12%), Query Frame = 1 
Query:    1 LMSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAPQ 498
            L++RIAV RA  +++P ++LRW+DR LIRLC +FA Y  +   +FSL PT SIFPQF++HLRRS F+Q  NQS DE  YKRLVF  EDTSNS++MIQPSL+ YSF GPP PVLLDA S R DVILLLD +F+V+VW GETIASWR+Q YQ RPEH AF++LLEAPQ
Sbjct:  518 LIARIAVSRA-KEQDPEEVLRWVDRNLIRLCRRFADYTQEKSETFSLQPTFSIFPQFMFHLRRSAFLQTFNQSLDEVAYKRLVFNREDTSNSLVMIQPSLICYSFQGPPAPVLLDAQSARADVILLLDGYFNVVVWHGETIASWRDQGYQTRPEHAAFKSLLEAPQ 682
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: K0RP21_THAOC (Protein transport protein SEC23 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RP21_THAOC)

HSP 1 Score: 223 bits (569), Expect = 8.810e-66
Identity = 105/166 (63.25%), Postives = 134/166 (80.72%), Query Frame = 1 
Query:    1 LMSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAPQ 498
            L++R+AV R  D EE  D+LRW+DR+LIRLC++FA Y PDDP SF L+P +S+FPQF++HLRRS F+Q  N SPDE  Y R +   E+T+NS++MIQP+LL+YSF GPPQP LLD+ S+RPD ILLLD+FFHV+V+ GET A+WREQRY ++ EH AFR LLEAPQ
Sbjct:  556 LLARVAVERT-DTEEVADVLRWVDRSLIRLCAKFADYTPDDPNSFRLSPELSLFPQFVFHLRRSQFLQLFNSSPDEAAYYRYILNKENTTNSLVMIQPTLLSYSFNGPPQPALLDSQSVRPDTILLLDTFFHVVVFHGETCAAWREQRYHEQEEHVAFRNLLEAPQ 720
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BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Match: A0A7S3V1C8_9STRA (Protein transport protein SEC23 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V1C8_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.050e-65
Identity = 103/165 (62.42%), Postives = 136/165 (82.42%), Query Frame = 1 
Query:    1 LMSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTMSIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLLAYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQDRPEHGAFRALLEAP 495
            LM+R AVHR  D EE  DILRWLDR+LIRLC +FA YR DDP SF L+P  SI+PQF++HLRRS F+Q  N SPDE+ Y+R++ + E+T+NS++MIQP+LL+YSF GPP+PVLLD +S++ + ILLLD+FF+V+V+ GETI+SWR+Q YQD+P+H  FR LL+AP
Sbjct:  415 LMARAAVHRT-DTEETTDILRWLDRSLIRLCGKFAEYRKDDPTSFQLSPEFSIYPQFMFHLRRSHFLQVFNSSPDESAYRRMILVRENTTNSLVMIQPALLSYSFHGPPEPVLLDVSSIQQNTILLLDTFFNVVVFHGETISSWRDQGYQDQPDHENFRNLLQAP 578
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128696.5766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9VM74_9STRA4.190e-7263.86Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A7S2I581_9STRA7.080e-7063.25Protein transport protein SEC23 n=1 Tax=Helicothec... [more]
A0A7S2JSI2_9STRA1.030e-6762.05Protein transport protein SEC23 n=1 Tax=Leptocylin... [more]
A0A813C4E1_9DINO3.140e-6761.45Protein transport protein SEC23 n=1 Tax=Symbiodini... [more]
A0A5A8D4Z4_CAFRO3.200e-6765.66Protein transport protein SEC23 n=1 Tax=Cafeteria ... [more]
A0A7S2CH11_9STRA1.000e-6663.25Protein transport protein SEC23 n=1 Tax=Florenciel... [more]
A0A812TWJ3_SYMMI1.430e-6661.82Protein transport protein SEC23 n=1 Tax=Symbiodini... [more]
A0A812VFA3_9DINO2.020e-6666.27Protein transport protein SEC23 n=1 Tax=Symbiodini... [more]
K0RP21_THAOC8.810e-6663.25Protein transport protein SEC23 n=1 Tax=Thalassios... [more]
A0A7S3V1C8_9STRA1.050e-6562.42Protein transport protein SEC23 n=1 Tax=Aplanochyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128696contigM-pyrifera_M_contig128696:1..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue1e-55
Seed eggNOG ortholog159749.K0RP21
Preferred nameSEC23A
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001501,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003330,GO:0003331,GO:0003400,GO:0003674,GO:0005096,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007163,GO:0007275,GO:0007389,GO:0007399,GO:0007424,GO:0007517,GO:0007591,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008360,GO:0008363,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016203,GO:0016236,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019898,GO:0019941,GO:0022008,GO:0022407,GO:0022409,GO:0022603,GO:0022604,GO:0022607,GO:0030011,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030154,GO:0030155,GO:0030163,GO:0030198,GO:0030234,GO:0030433,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030695,GO:0031090,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033333,GO:0033334,GO:0033339,GO:0033554,GO:0034394,GO:0034613,GO:0034622,GO:0034976,GO:0035017,GO:0035107,GO:0035138,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035293,GO:0035295,GO:0035459,GO:0036503,GO:0040003,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042886,GO:0043009,GO:0043062,GO:0043085,GO:0043087,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043547,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045785,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048070,GO:0048079,GO:0048081,GO:0048087,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048209,GO:0048471,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048598,GO:0048646,GO:0048699,GO:0048701,GO:0048702,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051216,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060341,GO:0060538,GO:0060541,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061061,GO:0061448,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070971,GO:0071702,GO:0071704,GO:0071705,GO:0071711,GO:0071840,GO:0072657,GO:0072659,GO:0090110,GO:0090113,GO:0090114,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0120035,GO:1900006,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903053,GO:1903055,GO:1903530,GO:1903532,GO:1904888,GO:1990778,GO:2000026
EggNOG free text desc.Gelsolin repeat
EggNOG OGs2XAQH@2836,COG5047@1,KOG1986@2759
COG Functional cat.U
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons1
Model size498
Cds size495
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.963127-UTR-M-pyrifera_M_contig128696:0..31622815799.963127-UTR-M-pyrifera_M_contig128696:0..3Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128696 1..3 +
1692277575.0767102-UTR-M-pyrifera_M_contig128696:0..31692277575.0767102-UTR-M-pyrifera_M_contig128696:0..3Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128696 1..3 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.9818327-CDS-M-pyrifera_M_contig128696:3..4981622815799.9818327-CDS-M-pyrifera_M_contig128696:3..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128696 4..498 +
1692277575.0897243-CDS-M-pyrifera_M_contig128696:3..4981692277575.0897243-CDS-M-pyrifera_M_contig128696:3..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128696 4..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128696.5766.1prot_M-pyrifera_M_contig128696.5766.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128696 4..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128696.5766.1

>prot_M-pyrifera_M_contig128696.5766.1 ID=prot_M-pyrifera_M_contig128696.5766.1|Name=mRNA_M-pyrifera_M_contig128696.5766.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
MSRIAVHRAIDDEEPGDILRWLDRALIRLCSQFAAYRPDDPGSFSLAPTM
SIFPQFLYHLRRSPFVQPQNQSPDETTYKRLVFLAEDTSNSVLMIQPSLL
AYSFAGPPQPVLLDAASLRPDVILLLDSFFHVIVWSGETIASWREQRYQD
RPEHGAFRALLEAPQ
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mRNA from alignment at M-pyrifera_M_contig128696:1..498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128696.5766.1 ID=mRNA_M-pyrifera_M_contig128696.5766.1|Name=mRNA_M-pyrifera_M_contig128696.5766.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig128696:1..498+ (Macrocystis pyrifera P11B4 male)
CTCATGTCACGCATCGCAGTGCACAGAGCCATTGACGACGAGGAGCCTGG
CGACATTCTCCGCTGGCTCGACAGAGCCCTCATCCGCCTCTGCTCCCAAT
TCGCTGCCTATCGCCCAGACGACCCTGGCTCTTTCTCGCTCGCGCCCACC
ATGTCCATCTTCCCGCAGTTCCTCTACCACCTGCGCCGCTCTCCGTTCGT
GCAGCCGCAAAACCAGAGCCCCGACGAAACCACCTACAAGCGGCTCGTCT
TCCTCGCAGAAGACACGTCCAACTCGGTGCTCATGATCCAGCCCTCCTTG
CTCGCTTACTCCTTCGCGGGGCCACCTCAACCCGTGCTCCTTGACGCGGC
CTCGCTGCGTCCAGACGTCATCCTGCTCCTCGACTCCTTCTTCCACGTCA
TCGTGTGGTCGGGAGAAACCATCGCCTCGTGGAGGGAGCAACGCTACCAA
GACCGCCCCGAACATGGAGCATTCCGTGCTCTCCTCGAAGCACCCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128696:1..498+

>mRNA_M-pyrifera_M_contig128696.5766.1 ID=mRNA_M-pyrifera_M_contig128696.5766.1|Name=mRNA_M-pyrifera_M_contig128696.5766.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig128696:1..498+ (Macrocystis pyrifera P11B4 male)
ATGTCACGCATCGCAGTGCACAGAGCCATTGACGACGAGGAGCCTGGCGA
CATTCTCCGCTGGCTCGACAGAGCCCTCATCCGCCTCTGCTCCCAATTCG
CTGCCTATCGCCCAGACGACCCTGGCTCTTTCTCGCTCGCGCCCACCATG
TCCATCTTCCCGCAGTTCCTCTACCACCTGCGCCGCTCTCCGTTCGTGCA
GCCGCAAAACCAGAGCCCCGACGAAACCACCTACAAGCGGCTCGTCTTCC
TCGCAGAAGACACGTCCAACTCGGTGCTCATGATCCAGCCCTCCTTGCTC
GCTTACTCCTTCGCGGGGCCACCTCAACCCGTGCTCCTTGACGCGGCCTC
GCTGCGTCCAGACGTCATCCTGCTCCTCGACTCCTTCTTCCACGTCATCG
TGTGGTCGGGAGAAACCATCGCCTCGTGGAGGGAGCAACGCTACCAAGAC
CGCCCCGAACATGGAGCATTCCGTGCTCTCCTCGAAGCACCCCAGATGTC
ACGCATCGCAGTGCACAGAGCCATTGACGACGAGGAGCCTGGCGACATTC
TCCGCTGGCTCGACAGAGCCCTCATCCGCCTCTGCTCCCAATTCGCTGCC
TATCGCCCAGACGACCCTGGCTCTTTCTCGCTCGCGCCCACCATGTCCAT
CTTCCCGCAGTTCCTCTACCACCTGCGCCGCTCTCCGTTCGTGCAGCCGC
AAAACCAGAGCCCCGACGAAACCACCTACAAGCGGCTCGTCTTCCTCGCA
GAAGACACGTCCAACTCGGTGCTCATGATCCAGCCCTCCTTGCTCGCTTA
CTCCTTCGCGGGGCCACCTCAACCCGTGCTCCTTGACGCGGCCTCGCTGC
GTCCAGACGTCATCCTGCTCCTCGACTCCTTCTTCCACGTCATCGTGTGG
TCGGGAGAAACCATCGCCTCGTGGAGGGAGCAACGCTACCAAGACCGCCC
CGAACATGGAGCATTCCGTGCTCTCCTCGAAGCACCCCAG
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