mRNA_M-pyrifera_M_contig128690.5765.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128690.5765.1
Unique NamemRNA_M-pyrifera_M_contig128690.5765.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig128690.5765.1 vs. uniprot
Match: A0A1P8WA47_9PLAN (Flagellar basal body P-ring biosynthesis protein FlgA n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WA47_9PLAN)

HSP 1 Score: 62.0 bits (149), Expect = 2.690e-8
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 1 
Query:    1 IFVRLHDRVSVSERIVRVSHLAVVTGDDPADVARIRHLDVMVLDEDVSAHALPREQVLIRLLLAGYSNDDVRVSGSKTVTVSQQVVSPHASLDVENAAAIAMAQALGVQREDVRVKLVATL--DLSNDNREIADQSVAIDVLPPLRPTPGRVRLTVRLLMDGQL 486
            + V+L     V  R V ++ +A ++     +      +D+   D   S+  L R  V IRL++AG+ +D++RVSG + + V  +   P A  D+E AA   M Q LGV  E++R++L       L    RE  D  + ++V+PP     G   L V L   G L
Sbjct:   37 LIVQLRANPVVDCRQVTLADVADISATTNNEAVIAGQIDLADFDNTKSSLFLNRSFVRIRLMVAGWGSDELRVSGPEKIFVEFEEPEPLADTDIEIAATRTMQQMLGVPEEELRIRLANPFVSALPTQIRERPD--LRVEVMPPSSARLGTSSLNVMLWDGGNL 198
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128690.5765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1P8WA47_9PLAN2.690e-830.49Flagellar basal body P-ring biosynthesis protein F... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128690contigM-pyrifera_M_contig128690:2..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.9155796-CDS-M-pyrifera_M_contig128690:1..4901622815799.9155796-CDS-M-pyrifera_M_contig128690:1..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128690 2..490 +
1692277575.0615954-CDS-M-pyrifera_M_contig128690:1..4901692277575.0615954-CDS-M-pyrifera_M_contig128690:1..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128690 2..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128690.5765.1prot_M-pyrifera_M_contig128690.5765.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128690 2..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128690.5765.1

>prot_M-pyrifera_M_contig128690.5765.1 ID=prot_M-pyrifera_M_contig128690.5765.1|Name=mRNA_M-pyrifera_M_contig128690.5765.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
IFVRLHDRVSVSERIVRVSHLAVVTGDDPADVARIRHLDVMVLDEDVSAH
ALPREQVLIRLLLAGYSNDDVRVSGSKTVTVSQQVVSPHASLDVENAAAI
AMAQALGVQREDVRVKLVATLDLSNDNREIADQSVAIDVLPPLRPTPGRV
RLTVRLLMDGQLK
back to top

mRNA from alignment at M-pyrifera_M_contig128690:2..490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128690.5765.1 ID=mRNA_M-pyrifera_M_contig128690.5765.1|Name=mRNA_M-pyrifera_M_contig128690.5765.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig128690:2..490+ (Macrocystis pyrifera P11B4 male)
ATTTTCGTGCGACTTCATGATCGAGTCAGTGTCTCTGAACGGATTGTGCG
TGTCAGTCATCTGGCAGTTGTCACGGGAGACGACCCAGCGGACGTTGCTC
GGATTCGCCACCTCGATGTGATGGTTCTGGACGAGGATGTCTCAGCACAC
GCGCTCCCCCGCGAGCAGGTGCTGATCCGTCTCCTGCTCGCGGGATATTC
GAACGATGACGTTCGAGTGAGTGGCTCGAAGACGGTGACAGTTTCTCAAC
AGGTTGTCTCGCCTCATGCGTCACTCGATGTCGAGAACGCTGCTGCGATT
GCGATGGCACAGGCACTCGGCGTGCAGCGCGAAGACGTCCGCGTCAAACT
GGTGGCCACGTTGGATTTGTCGAATGACAATCGTGAAATCGCCGATCAAA
GTGTCGCGATCGATGTCCTGCCACCCTTGCGTCCGACACCGGGCCGGGTG
CGACTGACAGTTCGCCTGCTGATGGATGGCCAATTGAAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig128690:2..490+

>mRNA_M-pyrifera_M_contig128690.5765.1 ID=mRNA_M-pyrifera_M_contig128690.5765.1|Name=mRNA_M-pyrifera_M_contig128690.5765.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig128690:2..490+ (Macrocystis pyrifera P11B4 male)
ATTTTCGTGCGACTTCATGATCGAGTCAGTGTCTCTGAACGGATTGTGCG
TGTCAGTCATCTGGCAGTTGTCACGGGAGACGACCCAGCGGACGTTGCTC
GGATTCGCCACCTCGATGTGATGGTTCTGGACGAGGATGTCTCAGCACAC
GCGCTCCCCCGCGAGCAGGTGCTGATCCGTCTCCTGCTCGCGGGATATTC
GAACGATGACGTTCGAGTGAGTGGCTCGAAGACGGTGACAGTTTCTCAAC
AGGTTGTCTCGCCTCATGCGTCACTCGATGTCGAGAACGCTGCTGCGATT
GCGATGGCACAGGCACTCGGCGTGCAGCGCGAAGACGTCCGCGTCAAACT
GGTGGCCACGTTGGATTTGTCGAATGACAATCGTGAAATCGCCGATCAAA
GTGTCGCGATCGATGTCCTGCCACCCTTGCGTCCGACACCGGGCCGGGTG
CGACTGACAGTTCGCCTGCTGATGGATGGCCAATTGAAAATTTTCGTGCG
ACTTCATGATCGAGTCAGTGTCTCTGAACGGATTGTGCGTGTCAGTCATC
TGGCAGTTGTCACGGGAGACGACCCAGCGGACGTTGCTCGGATTCGCCAC
CTCGATGTGATGGTTCTGGACGAGGATGTCTCAGCACACGCGCTCCCCCG
CGAGCAGGTGCTGATCCGTCTCCTGCTCGCGGGATATTCGAACGATGACG
TTCGAGTGAGTGGCTCGAAGACGGTGACAGTTTCTCAACAGGTTGTCTCG
CCTCATGCGTCACTCGATGTCGAGAACGCTGCTGCGATTGCGATGGCACA
GGCACTCGGCGTGCAGCGCGAAGACGTCCGCGTCAAACTGGTGGCCACGT
TGGATTTGTCGAATGACAATCGTGAAATCGCCGATCAAAGTGTCGCGATC
GATGTCCTGCCACCCTTGCGTCCGACACCGGGCCGGGTGCGACTGACAGT
TCGCCTGCTGATGGATGGCCAATTGAAA
back to top