mRNA_M-pyrifera_M_contig128681.5762.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128681.5762.1
Unique NamemRNA_M-pyrifera_M_contig128681.5762.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: A0A2D8CGK2_9BACT (Uncharacterized protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CGK2_9BACT)

HSP 1 Score: 130 bits (328), Expect = 2.370e-32
Identity = 69/167 (41.32%), Postives = 109/167 (65.27%), Query Frame = 1
Query:    1 YVGTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGYPLLTSPFWLEYFFVWSTAMQFFIYLFCTQYLDLRQNAPLLHKTSFILALLLSVFIPLMRLINIDANTL-MNLYHFNMILFHFFLLYVGYYLWWKTIKNASYY 498
            Y GTL+AL   K K+D L+  +IG+M+IMI YNLFL  AT+D IY+ Y+AY+ +  + +TF+N YP   +PFWLE +F+W +   FF  LF T+YLDL+  AP L+ + +++ + LS  IP++ L+ + ++ + +  Y   ++  +  LL+ G YL +K  KNA +Y
Sbjct:  172 YAGTLAALVKKKEKHDFLTAGYIGLMIIMILYNLFLGLATQDRIYVYYIAYLITMTITITFSNHYPFSNNPFWLENYFLWGSIFHFFASLFSTKYLDLQNQAPYLNISVWVITVFLSFVIPILTLLGVPSHVIAVPYYQIGVVSLYLSLLWSGIYLLFKGHKNARFY 338          
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: A1ZF76_9BACT (7TM diverse intracellular signalling domain protein n=1 Tax=Microscilla marina ATCC 23134 TaxID=313606 RepID=A1ZF76_9BACT)

HSP 1 Score: 101 bits (252), Expect = 6.050e-22
Identity = 64/165 (38.79%), Postives = 95/165 (57.58%), Query Frame = 1
Query:    4 VGTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGYPLLTSPFWLEYFFVWSTAMQFFIYLFCTQYLDLRQNAPLLHKTSFILALLLSVFIPLMRLINIDANTLMNLYHFNMILFHFFLLYVGYYLWWKTIKNASYY 498
            VGT  +L      YD +  +FIG++L M+ YNLFL +AT D +YL YV+Y+A   LV  F+NG  +    ++ + F VW + + + I LF   YL+LRQ+A  L +  + L + L VF PL+ LI I     +  +   ++++ F LL  G YLW K  KNA +Y
Sbjct:  163 VGTTQSLIKKFDTYDQILNIFIGLVLSMLVYNLFLFFATHDRLYLIYVSYLAMVFLVTPFSNGQAMFFYSWFWDNFLVWQSPLFWTITLFVDLYLNLRQHALQLKRWLWALTVCLGVFFPLLNLIGIHMAYYLRFFQLMVLVYSFSLLICGVYLWRKGHKNARFY 327          
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: A0A349DXI3_9BACT (PPM-type phosphatase domain-containing protein n=1 Tax=Microscillaceae bacterium TaxID=2053581 RepID=A0A349DXI3_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 2.280e-15
Identity = 54/166 (32.53%), Postives = 93/166 (56.02%), Query Frame = 1
Query:    4 VGTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGYPLLTSPFWLEYFFVWSTAMQFFIYLFCTQYLDLRQNAPLLHKTSFILALLLSVFIPLMRLINIDANTLMNL-YHFNMILFHFFLLYVGYYLWWKTIKNASYY 498
            +GT  AL +     D +  LFIG++L ++ YNLF+ Y+ +DTIYL Y+ Y+     V TF++GYPL+   +   YF+ W+      I LF + YL+L++ +P  ++  +   +LLS   PL  +  I +   + + Y   +  ++  LL++G +L  K  +NA +Y
Sbjct:  175 IGTFRALDSYLQVNDYIVTLFIGIILALLIYNLFIYYSARDTIYLVYILYLGWVLFVATFSSGYPLVYKHWLWNYFYSWNGIGYTLITLFASFYLNLKRVSPRFYRWIWFCTILLSAVFPLFNITGILSVVQLAMPYQLVLTTYYLSLLFIGIWLVAKGQRNARFY 340          
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: A0A1Q3H465_9BACT (PPM-type phosphatase domain-containing protein n=1 Tax=marine bacterium AO1-C TaxID=1905359 RepID=A0A1Q3H465_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 4.220e-15
Identity = 54/166 (32.53%), Postives = 91/166 (54.82%), Query Frame = 1
Query:    4 VGTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGYPLLTSPFWLEYFFVWSTAMQFFIYLFCTQYLDLRQNAPLLHKTSFILALLLSVFIPLMRLINIDANTLMNL-YHFNMILFHFFLLYVGYYLWWKTIKNASYY 498
            +GT  AL       D +  LFIG++L ++ YNLF+ Y+ +D IYL Y+ Y+     V TF +GY L    +  +YF+ W+ +  F I LF + YL+L++  P  ++  +   +LLS   PL  L  + +   M + Y   + +++  LL++G +L  K  +NA +Y
Sbjct:  175 IGTFRALDKYLQVNDYIVTLFIGVILALLIYNLFIYYSARDIIYLVYILYLGWVLFVATFTSGYALAYKHWLWDYFYSWNGSGYFLITLFASIYLNLKKVTPRFYRWIWFCTILLSAVFPLFNLTGLISVVQMAMPYQLVLTVYYLSLLFIGIWLVVKGHRNARFY 340          
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: A1ZRX3_9BACT (Sensory transduction histidine kinase n=1 Tax=Microscilla marina ATCC 23134 TaxID=313606 RepID=A1ZRX3_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 4.520e-15
Identity = 56/165 (33.94%), Postives = 88/165 (53.33%), Query Frame = 1
Query:    4 VGTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGYPLLTSPFWLEYFFVWSTAMQFFIYLFCTQYLDLRQNAPLLHKTSFILALLLSVFIPLMRLINIDANTLMNLYHFNMILFHFFLLYVGYYLWWKTIKNASYY 498
            +GT +A+T     Y+ +   FIG+++ M  YNLFL +ATKD IYL YV Y+        F NG  L    ++  YF VW + + + + LF  +YLDL  NA  + +  ++L  +L    PL+ L  I    L++      +++ F LL  G+YL +K +  A +Y
Sbjct:  172 IGTTTAITRQFGIYNAILAGFIGLIVAMGVYNLFLFFATKDKIYLIYVGYLVIVFFSTPFNNGQTLFFGQWFWSYFTVWQSLLFWLVTLFVDRYLDLATNAVNVRRWLWLLTSVLGGVFPLLNLSGISLVYLISPLQLITLVYTFSLLVCGFYLLYKGVHTARFY 336          
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: A0A1I2FEM1_9BACT (Signal transduction histidine kinase n=2 Tax=Thermoflexibacter ruber TaxID=1003 RepID=A0A1I2FEM1_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 2.400e-11
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    4 VGTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGYPLLTSPF------WLEYFFVWSTAMQFFIYLFCTQYLDLRQNAPLLHKTSFILALLLSVFIPLMRLINIDANTLMNL 408
            VGTL +L  NK K D + G F+G++L+M  YNLFL  ATKD +Y+ YV Y+ S+  + TF N YPLL   F        +Y          F  +F   +L+ R++ P        L L++   IP   +++I    +++L
Sbjct:  185 VGTLLSLHQNKTKTDYIVGGFVGLILMMFLYNLFLLIATKDRVYIWYVLYLFSTIFIFTFLNQYPLLVYLFPKLRYASQQYIISLQNISYLFAAVFAIDFLNFRRHVPYFRVYLLCLLLVMIGVIPCCNILHIIPFPILSL 325          
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: A0A3C0I963_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Microscillaceae bacterium TaxID=2053581 RepID=A0A3C0I963_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 1.380e-9
Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 1
Query:    4 VGTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGYP---------LLTSPFWLEYFFVWSTAMQFFIYLFCTQYLDLRQNAPLLHKTSFIL 336
            +G+L +LT  K   D ++  F+G+MLI++ ++LF+    ++ IYL Y  Y+ +S  VL F N YP         LLT   W +Y+  WS+ +  FI LF   +L ++   P  ++   IL
Sbjct:  173 IGSLQSLTKLKTINDFITAGFVGVMLILLVFSLFIYNNLRERIYLHYAGYLLASIFVLPFLNNYPFVQRITLGGLLTPIDWWKYYLGWSSFIFLFITLFSVNFLRIKHYHPYFYRAIMIL 292          
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: A0A2G5L1W9_9BACT (Uncharacterized protein n=2 Tax=Reichenbachiella sp. 5M10 TaxID=1889772 RepID=A0A2G5L1W9_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 4.140e-9
Identity = 48/168 (28.57%), Postives = 85/168 (50.60%), Query Frame = 1
Query:    7 GTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGYPLLTSPFWLE---YFFVWSTAMQFFIYLFCTQYLDLRQNAPLLHKTSFILALLLSVFIPLMRLIN-IDANTLMNLYHFNMILFHFFLLYVGYYLWWKTIKNASYY 498
            G L+ +++     + +  LFIG ML +  YN+FL ++T+D I++ Y+ Y+      + F NGY L +  +  +   ++ VW++        F   YLDL +NAP L     +L  +L V +PL+     +    +  +   + +LF+  L   G Y+W K + +A YY
Sbjct:  200 GDLTQISSYLLHKESIPLLFIGFMLCIFIYNVFLLFSTRDLIFIPYLIYLLFVTYAVPFHNGYVLFSEEWMWQGNPFYTVWTSVGYLSGGWFAIIYLDLPKNAPRLRYWIILLMAVLVVIVPLLDASGWLHVGIMAMIVSTSSLLFNLSLWSAGVYVWIKGVSHAHYY 367          
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: UPI001996F00A (GHKL domain-containing protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI001996F00A)

HSP 1 Score: 63.2 bits (152), Expect = 1.480e-8
Identity = 41/120 (34.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    4 VGTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGY---------PLLTSPFWLEYFFVWSTAMQFFIY-LFCTQYLDLRQNAPLLHKTSFI 333
            +GTL++   +  K D++ G+++G ML+++ YNLFL ++TK+ +YL YVAY+AS    ++    Y         P++ S      + V STA+      LF  ++L  R+  P LHK SF+
Sbjct:  166 IGTLNSFMEDIHKLDLIQGIYLGFMLLILLYNLFLYFSTKEKLYLYYVAYVASITWFMSTVYQYVFEYLWPGLPIINS------YAVASTALTILTATLFTREFLHTRKLTPRLHKISFL 279          
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Match: A0A1M6JMV9_9BACT (7TMR-DISM extracellular 2 n=4 Tax=Reichenbachiella TaxID=156993 RepID=A0A1M6JMV9_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 4.740e-8
Identity = 47/169 (27.81%), Postives = 83/169 (49.11%), Query Frame = 1
Query:    7 GTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVAYIASSALVLTFANGYPLLTSPFWLE---YFFVWSTAMQFFIYLFCTQYLDLRQNAPLLHKTSFILALLLSVFIPLMRLIN-IDANTLMNLYHFNMILFHFFLLYVGYYLWWK-TIKNASYY 498
            G LS ++  +   D +  +FIG ML +  YN+FL  +T+D ++L Y+ Y+      + F NGY L +  +  +   ++ VW+        +F   YLDL+  AP       +L  +L V +PL+ +        +  +     ++F+  L + G Y+W K  I++A YY
Sbjct:  162 GDLSTMSHYQLHKDTIPLIFIGFMLCIFIYNVFLFLSTRDIVFLPYLLYLLFVTYAVPFHNGYVLFSEEWMWQGNPFYTVWTGIGYLTGAIFAILYLDLKNTAPRFRVWIILLTFILVVIVPLLDVSRWFHVGIMAKIVSTTSLVFNLSLWFSGLYVWIKGRIEHAHYY 330          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128681.5762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8CGK2_9BACT2.370e-3241.32Uncharacterized protein n=2 Tax=Balneolaceae TaxID... [more]
A1ZF76_9BACT6.050e-2238.797TM diverse intracellular signalling domain protei... [more]
A0A349DXI3_9BACT2.280e-1532.53PPM-type phosphatase domain-containing protein n=1... [more]
A0A1Q3H465_9BACT4.220e-1532.53PPM-type phosphatase domain-containing protein n=1... [more]
A1ZRX3_9BACT4.520e-1533.94Sensory transduction histidine kinase n=1 Tax=Micr... [more]
A0A1I2FEM1_9BACT2.400e-1134.04Signal transduction histidine kinase n=2 Tax=Therm... [more]
A0A3C0I963_9BACT1.380e-933.33Uncharacterized protein (Fragment) n=1 Tax=Microsc... [more]
A0A2G5L1W9_9BACT4.140e-928.57Uncharacterized protein n=2 Tax=Reichenbachiella s... [more]
UPI001996F00A1.480e-834.17GHKL domain-containing protein n=1 Tax=Flavobacter... [more]
A0A1M6JMV9_9BACT4.740e-827.817TMR-DISM extracellular 2 n=4 Tax=Reichenbachiella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128681contigM-pyrifera_M_contig128681:1..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.5
Seed ortholog evalue7.7e-19
Seed eggNOG ortholog313606.M23134_07588
Preferred namesrrB
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sigma factor PP2C-like phosphatases
EggNOG OGs47MWQ@768503,4PMCM@976,COG2208@1,COG2208@2
COG Functional cat.KT
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.8158095-CDS-M-pyrifera_M_contig128681:0..4981622815799.8158095-CDS-M-pyrifera_M_contig128681:0..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128681 1..498 -
1692277575.0159218-CDS-M-pyrifera_M_contig128681:0..4981692277575.0159218-CDS-M-pyrifera_M_contig128681:0..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128681 1..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128681.5762.1prot_M-pyrifera_M_contig128681.5762.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128681 1..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128681.5762.1

>prot_M-pyrifera_M_contig128681.5762.1 ID=prot_M-pyrifera_M_contig128681.5762.1|Name=mRNA_M-pyrifera_M_contig128681.5762.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
YVGTLSALTANKFKYDMLSGLFIGMMLIMIFYNLFLAYATKDTIYLSYVA
YIASSALVLTFANGYPLLTSPFWLEYFFVWSTAMQFFIYLFCTQYLDLRQ
NAPLLHKTSFILALLLSVFIPLMRLINIDANTLMNLYHFNMILFHFFLLY
VGYYLWWKTIKNASYY
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mRNA from alignment at M-pyrifera_M_contig128681:1..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128681.5762.1 ID=mRNA_M-pyrifera_M_contig128681.5762.1|Name=mRNA_M-pyrifera_M_contig128681.5762.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig128681:1..498- (Macrocystis pyrifera P11B4 male)
TACGTCGGTACGCTATCCGCACTGACAGCCAACAAATTCAAGTACGATAT GCTATCAGGCCTATTTATAGGTATGATGCTTATCATGATTTTCTATAATC TATTCCTTGCCTATGCTACTAAGGACACTATCTATTTATCCTATGTTGCT TACATTGCTAGCAGCGCATTAGTCCTAACTTTTGCCAATGGATACCCATT ACTTACCTCGCCTTTTTGGCTAGAATATTTCTTTGTTTGGTCTACTGCCA TGCAATTTTTTATTTACCTGTTTTGTACACAGTATTTAGACCTACGTCAA AACGCACCATTACTCCACAAGACATCTTTCATCCTAGCTCTTTTGTTATC TGTGTTTATTCCTCTAATGAGGTTGATCAATATTGATGCAAATACCTTGA TGAACCTGTATCACTTTAACATGATACTTTTCCATTTCTTCTTATTATAC GTAGGGTATTATCTGTGGTGGAAGACGATCAAAAATGCTTCATATTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128681:1..498-

>mRNA_M-pyrifera_M_contig128681.5762.1 ID=mRNA_M-pyrifera_M_contig128681.5762.1|Name=mRNA_M-pyrifera_M_contig128681.5762.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig128681:1..498- (Macrocystis pyrifera P11B4 male)
TACGTCGGTACGCTATCCGCACTGACAGCCAACAAATTCAAGTACGATAT
GCTATCAGGCCTATTTATAGGTATGATGCTTATCATGATTTTCTATAATC
TATTCCTTGCCTATGCTACTAAGGACACTATCTATTTATCCTATGTTGCT
TACATTGCTAGCAGCGCATTAGTCCTAACTTTTGCCAATGGATACCCATT
ACTTACCTCGCCTTTTTGGCTAGAATATTTCTTTGTTTGGTCTACTGCCA
TGCAATTTTTTATTTACCTGTTTTGTACACAGTATTTAGACCTACGTCAA
AACGCACCATTACTCCACAAGACATCTTTCATCCTAGCTCTTTTGTTATC
TGTGTTTATTCCTCTAATGAGGTTGATCAATATTGATGCAAATACCTTGA
TGAACCTGTATCACTTTAACATGATACTTTTCCATTTCTTCTTATTATAC
GTAGGGTATTATCTGTGGTGGAAGACGATCAAAAATGCTTCATATTACTA
CGTCGGTACGCTATCCGCACTGACAGCCAACAAATTCAAGTACGATATGC
TATCAGGCCTATTTATAGGTATGATGCTTATCATGATTTTCTATAATCTA
TTCCTTGCCTATGCTACTAAGGACACTATCTATTTATCCTATGTTGCTTA
CATTGCTAGCAGCGCATTAGTCCTAACTTTTGCCAATGGATACCCATTAC
TTACCTCGCCTTTTTGGCTAGAATATTTCTTTGTTTGGTCTACTGCCATG
CAATTTTTTATTTACCTGTTTTGTACACAGTATTTAGACCTACGTCAAAA
CGCACCATTACTCCACAAGACATCTTTCATCCTAGCTCTTTTGTTATCTG
TGTTTATTCCTCTAATGAGGTTGATCAATATTGATGCAAATACCTTGATG
AACCTGTATCACTTTAACATGATACTTTTCCATTTCTTCTTATTATACGT
AGGGTATTATCTGTGGTGGAAGACGATCAAAAATGCTTCATATTAC
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