mRNA_M-pyrifera_M_contig128671.5761.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128671.5761.1
Unique NamemRNA_M-pyrifera_M_contig128671.5761.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128671.5761.1 vs. uniprot
Match: A0A2E7KGE8_9PLAN (Protein kinase domain-containing protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KGE8_9PLAN)

HSP 1 Score: 335 bits (860), Expect = 6.200e-110
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 1 
Query:    1 FAAPGRGLQRPTAEQWGTVLQKLETEITKCSRDAGHFHLGGHTCPWCRIISQGGPNFFISVSIKATEARSVKFDLKKVWFEISLVKAPENAEFKLAPPRTGSLTPRPVPEEVRSMKGLHNTIALIGLGAAVLSLLGILIPRLALFSIPILLIFSVWWTILWMQSPR 498
            FAAPGRGLQRPTAEQWGTVLQKLETEITKCSRDAGHFHLGGHTCPWCRIISQGGPNFFISVSIKATEARSVKFDLKKVWFEISLVKAPENAEFKLAPPRTGSLTPRPVPEEVRSMKGLHNTIALIGLGAAVLSLLGILIPRLALFSIPILL+FSVWWTILWMQSPR
Sbjct:  273 FAAPGRGLQRPTAEQWGTVLQKLETEITKCSRDAGHFHLGGHTCPWCRIISQGGPNFFISVSIKATEARSVKFDLKKVWFEISLVKAPENAEFKLAPPRTGSLTPRPVPEEVRSMKGLHNTIALIGLGAAVLSLLGILIPRLALFSIPILLVFSVWWTILWMQSPR 438
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BLAST of mRNA_M-pyrifera_M_contig128671.5761.1 vs. uniprot
Match: A0A517MW14_9BACT (Protein kinase domain protein n=1 Tax=Adhaeretor mobilis TaxID=1930276 RepID=A0A517MW14_9BACT)

HSP 1 Score: 157 bits (396), Expect = 9.420e-42
Identity = 81/165 (49.09%), Postives = 102/165 (61.82%), Query Frame = 1 
Query:    1 FAAPGRGLQRPTAEQWGTVLQKLETEITKCSRDAGHFHLGGHTCPWCRIISQGGPNFFISVSIKATEARSVKFDLKKVWFEISLVKAPENAEFKLAPPRTGSLTPRPVPEEVRSMKGLHNTIALIGLGAAVLSLLGILIPRLALFSIPILLIFSVWWTILWMQSP 495
            FA P  G  RPTA  W   L +LE ++ KCSRD GHFH  G  CPWCRI+ QGGPNFFISVS+K   ARS   +L +++FEI+ VK P ++  +     T SL PRP      S K     +A I  G AVL+L+GI    +A FS+PI L+FS+WW ILW+  P
Sbjct:  273 FADPRAGKPRPTATHWCNALLELEAKMRKCSRDPGHFHCEGSPCPWCRIVQQGGPNFFISVSLKTAAARSANINLHRIFFEINSVKPPASSLKRALRKPTQSLAPRPFEAGPDSNKIPRMLVAGITCGGAVLTLMGIFYSVVAYFSVPITLVFSLWWLILWLARP 437
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BLAST of mRNA_M-pyrifera_M_contig128671.5761.1 vs. uniprot
Match: A0A368KZ21_9BACT (Protein kinase domain-containing protein n=1 Tax=Blastopirellula cremea TaxID=1031537 RepID=A0A368KZ21_9BACT)

HSP 1 Score: 110 bits (275), Expect = 4.750e-25
Identity = 59/158 (37.34%), Postives = 86/158 (54.43%), Query Frame = 1 
Query:   28 RPTAEQWGTVLQKLETEITKCSRDAGHFHLGGHT-CPWCRIISQGGPNFFISVSIKATEARSVKFDLKKVWFEISLVKAPENAEFKLAPPRTGSLTPRPVPEEVRSMKGLHNTIALIGLGAAVLSLLGILIPRLALFSIPILLIFSVWWTILWMQSPR 498
            RPTA +W   L++LE  I  C  D GH++    T CPWC+I+  GGPN FISVSI +   RS  FD+ + W  I+ V  PE       PP T  + PR V +E    + + + +  + L   V+S  G+    +A+F++P+  I+  WW  L  +SPR
Sbjct:  284 RPTAAEWSQGLKRLEDNIAACPTDPGHYYSNHLTLCPWCKIVDNGGPNLFISVSIGSIIGRSSHFDMDRSWERITEVARPEQYFPLRIPPPTQKIVPRKVEQEKDPNRLIRSGLGWLALICLVISPAGLFNYLIAIFTLPLFAIYGAWWGYLTAKSPR 441
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BLAST of mRNA_M-pyrifera_M_contig128671.5761.1 vs. uniprot
Match: A0A354P8I9_9PLAN (Protein kinase domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A354P8I9_9PLAN)

HSP 1 Score: 97.1 bits (240), Expect = 2.440e-20
Identity = 53/153 (34.64%), Postives = 77/153 (50.33%), Query Frame = 1 
Query:   28 RPTAEQWGTVLQKLETEITKCSRDAGHFHLGGHTCPWCRIISQGGPNFFISVSIKATEARSVKFDLKKVWFEISLVKAPENA--EFKLAPPRTGSLTPRPVPEEVRSMKGLHNTIALIGLGAAVLSLLGILIPRLALFSIPILLIFSVWWTIL 480
            RP A  W + L  L   +  C  D GHFHL G  C WCRI +  GP FF++V++     +   FDL KVW EIS +  P  +      + P    L P P+P+                L ++ ++L G L+P +ALF+IP+++IF  W  +L
Sbjct:  285 RPRATDWISALDILGRSLRTCINDPGHFHLAGKACHWCRIEAGNGPYFFVTVTLATVPQQGNAFDLSKVWLEISQIVFPAISFQGSSNSNPGLNGLAPAPLPKTSDDTLWFRRVTGATCLVSSAVTLFGCLLPPVALFTIPLVIIFGCWHLVL 437
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BLAST of mRNA_M-pyrifera_M_contig128671.5761.1 vs. uniprot
Match: UPI001D0BB2D1 (SH3 domain-containing protein n=1 Tax=Acidisoma cellulosilyticum TaxID=2802395 RepID=UPI001D0BB2D1)

HSP 1 Score: 59.3 bits (142), Expect = 3.240e-7
Identity = 29/89 (32.58%), Postives = 44/89 (49.44%), Query Frame = 1 
Query:    1 FAAPGRGLQRPTAEQWGTVLQKLETEITKCSRDAGHFHLGGHT-CPWCRIISQGGPNFFISVSIKATEARSVKFDLKKVWFEISLVKAP 264
            F+  GR   RPTA +W T L  L++E+  C+ +  HF+  G+  CPWC+I S      F    +  T   S    +  +W +I  V +P
Sbjct:  277 FSPSGRNGSRPTATEWVTALDSLQSEVRPCASNQSHFYRKGYAGCPWCQIESSTNTTLF---PVIFTPGSSGTTSIAAIWQQIESVPSP 362
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128671.5761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2E7KGE8_9PLAN6.200e-11099.40Protein kinase domain-containing protein n=4 Tax=G... [more]
A0A517MW14_9BACT9.420e-4249.09Protein kinase domain protein n=1 Tax=Adhaeretor m... [more]
A0A368KZ21_9BACT4.750e-2537.34Protein kinase domain-containing protein n=1 Tax=B... [more]
A0A354P8I9_9PLAN2.440e-2034.64Protein kinase domain-containing protein n=1 Tax=P... [more]
UPI001D0BB2D13.240e-732.58SH3 domain-containing protein n=1 Tax=Acidisoma ce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128671contigM-pyrifera_M_contig128671:2..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.7728884-CDS-M-pyrifera_M_contig128671:1..4991622815799.7728884-CDS-M-pyrifera_M_contig128671:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128671 2..499 +
1692277574.9999-CDS-M-pyrifera_M_contig128671:1..4991692277574.9999-CDS-M-pyrifera_M_contig128671:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128671 2..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128671.5761.1prot_M-pyrifera_M_contig128671.5761.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128671 2..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128671.5761.1

>prot_M-pyrifera_M_contig128671.5761.1 ID=prot_M-pyrifera_M_contig128671.5761.1|Name=mRNA_M-pyrifera_M_contig128671.5761.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
FAAPGRGLQRPTAEQWGTVLQKLETEITKCSRDAGHFHLGGHTCPWCRII
SQGGPNFFISVSIKATEARSVKFDLKKVWFEISLVKAPENAEFKLAPPRT
GSLTPRPVPEEVRSMKGLHNTIALIGLGAAVLSLLGILIPRLALFSIPIL
LIFSVWWTILWMQSPR
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mRNA from alignment at M-pyrifera_M_contig128671:2..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128671.5761.1 ID=mRNA_M-pyrifera_M_contig128671.5761.1|Name=mRNA_M-pyrifera_M_contig128671.5761.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig128671:2..499+ (Macrocystis pyrifera P11B4 male)
TTCGCCGCACCCGGAAGGGGATTGCAGCGGCCAACGGCAGAACAGTGGGG
AACGGTTCTCCAGAAACTGGAAACGGAAATTACCAAATGCAGTCGTGATG
CAGGGCATTTTCATCTGGGTGGGCATACTTGTCCCTGGTGTCGGATTATC
AGTCAGGGAGGCCCTAACTTTTTCATCTCCGTTTCCATCAAAGCCACAGA
AGCACGTAGCGTAAAATTTGATCTGAAAAAAGTGTGGTTTGAAATCAGCC
TGGTGAAAGCTCCAGAAAATGCTGAATTCAAACTGGCCCCACCACGCACC
GGTTCCCTGACGCCACGTCCCGTTCCCGAGGAAGTCCGGTCGATGAAAGG
TCTGCATAATACCATCGCCTTAATCGGGCTCGGCGCCGCGGTATTGTCGC
TTCTGGGAATTCTGATACCCCGTCTCGCGTTGTTTTCAATTCCCATCCTC
CTGATATTTTCTGTCTGGTGGACCATTCTCTGGATGCAGAGCCCGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128671:2..499+

>mRNA_M-pyrifera_M_contig128671.5761.1 ID=mRNA_M-pyrifera_M_contig128671.5761.1|Name=mRNA_M-pyrifera_M_contig128671.5761.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig128671:2..499+ (Macrocystis pyrifera P11B4 male)
TTCGCCGCACCCGGAAGGGGATTGCAGCGGCCAACGGCAGAACAGTGGGG
AACGGTTCTCCAGAAACTGGAAACGGAAATTACCAAATGCAGTCGTGATG
CAGGGCATTTTCATCTGGGTGGGCATACTTGTCCCTGGTGTCGGATTATC
AGTCAGGGAGGCCCTAACTTTTTCATCTCCGTTTCCATCAAAGCCACAGA
AGCACGTAGCGTAAAATTTGATCTGAAAAAAGTGTGGTTTGAAATCAGCC
TGGTGAAAGCTCCAGAAAATGCTGAATTCAAACTGGCCCCACCACGCACC
GGTTCCCTGACGCCACGTCCCGTTCCCGAGGAAGTCCGGTCGATGAAAGG
TCTGCATAATACCATCGCCTTAATCGGGCTCGGCGCCGCGGTATTGTCGC
TTCTGGGAATTCTGATACCCCGTCTCGCGTTGTTTTCAATTCCCATCCTC
CTGATATTTTCTGTCTGGTGGACCATTCTCTGGATGCAGAGCCCGCGATT
CGCCGCACCCGGAAGGGGATTGCAGCGGCCAACGGCAGAACAGTGGGGAA
CGGTTCTCCAGAAACTGGAAACGGAAATTACCAAATGCAGTCGTGATGCA
GGGCATTTTCATCTGGGTGGGCATACTTGTCCCTGGTGTCGGATTATCAG
TCAGGGAGGCCCTAACTTTTTCATCTCCGTTTCCATCAAAGCCACAGAAG
CACGTAGCGTAAAATTTGATCTGAAAAAAGTGTGGTTTGAAATCAGCCTG
GTGAAAGCTCCAGAAAATGCTGAATTCAAACTGGCCCCACCACGCACCGG
TTCCCTGACGCCACGTCCCGTTCCCGAGGAAGTCCGGTCGATGAAAGGTC
TGCATAATACCATCGCCTTAATCGGGCTCGGCGCCGCGGTATTGTCGCTT
CTGGGAATTCTGATACCCCGTCTCGCGTTGTTTTCAATTCCCATCCTCCT
GATATTTTCTGTCTGGTGGACCATTCTCTGGATGCAGAGCCCGCGA
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