mRNA_M-pyrifera_M_contig128667.5758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128667.5758.1
Unique NamemRNA_M-pyrifera_M_contig128667.5758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: A0A7W1D2E5_9ACTN (DUF1697 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1D2E5_9ACTN)

HSP 1 Score: 60.8 bits (146), Expect = 1.470e-9
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   16 HIMFLADEAPTDTADRLG-DHSP-DEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPTCRKIAAALSD 240
            H+MFLAD        +L  D SP DE+   GRE+++RYP G+ RSKL  +  +R L T ATARN  T  K+   + D
Sbjct:  103 HVMFLADAPEGKALAKLDPDRSPPDEFEVRGREIYLRYPNGSGRSKLTTDYFERSLGTSATARNWNTITKVLKLMQD 179          
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: UPI001C6E3332 (DUF1697 domain-containing protein n=1 Tax=unclassified Mumia TaxID=2621872 RepID=UPI001C6E3332)

HSP 1 Score: 59.7 bits (143), Expect = 3.760e-9
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 1
Query:    1 EPKYHHIMFLADEAPTDTADRLG--DHSPDEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPTCRKIAA 228
            EPK  H+ FLA E   D    L   D  PD    IGRELH+RY  G ARS +    + +    + TARNL T  K+AA
Sbjct:   96 EPKLCHVWFLASEPSADAVRALESYDFGPDRVAPIGRELHLRYADGVARSAITAPRLLKLSGVVGTARNLRTVEKLAA 173          
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: A0A1T4YZR5_9ACTN (Uncharacterized conserved protein, DUF1697 family n=1 Tax=Aeromicrobium choanae TaxID=1736691 RepID=A0A1T4YZR5_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 1.410e-8
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 EPKYHHIMFLADEAPTDTADR--LGDHSPDEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPTCRKIAAALSD 240
            E K HH+ FL  E PT+      LG   PD    IGR+LH+RY +G A +KL   L+ R L +  T RNL T  K++A  ++
Sbjct:   94 ERKAHHVYFLL-EPPTEQQVEALLGRGLPDGLAVIGRDLHIRYAEGVAHTKLTPALILRTLGSHGTGRNLNTVEKLSALAAE 174          
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: A0A7V8WJK0_9ACTN (DUF1697 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8WJK0_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 1.570e-8
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   16 HIMFLADEAPTDTADRL-GDHS-PDEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPTCRKIAAALSD 240
            H+MFLAD        +L  D S PDE+   GRE+++RYP G+ RSKL  +  +R L T ATARN  T  ++   + +
Sbjct:  103 HVMFLADAPGKKAVGKLDADRSRPDEFEVRGREIYLRYPNGSGRSKLTIDYFERSLGTSATARNWNTITRVLQLMQE 179          
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: A0A3D2J3V3_9CHLR (DUF1697 domain-containing protein n=1 Tax=Ktedonobacter sp. TaxID=1932716 RepID=A0A3D2J3V3_9CHLR)

HSP 1 Score: 53.9 bits (128), Expect = 6.350e-7
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    1 EPKYHHIMFLA---DEAPTDTADRLGDHSPDEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPTCRKIAAAL 234
            EPK+  ++FLA   DEA   TA       P+E   +G+E+++ Y +G  RSKL NNL++++L TI T RN  T  ++   L
Sbjct:   99 EPKWIAVVFLATAPDEA-AQTALLQTYVGPEEIHILGKEMYIYYSEGMGRSKLTNNLIEKKLKTIGTTRNWNTVLQLQKML 178          
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: A0A838X7T9_9ACTN (DUF1697 domain-containing protein n=2 Tax=Actinomycetia TaxID=1760 RepID=A0A838X7T9_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 1.130e-6
Identity = 29/75 (38.67%), Postives = 38/75 (50.67%), Query Frame = 1
Query:    1 EPKYHHIMFLADEAPTDTADRLGDHS-PDEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPTCRKI 222
            E K HH+ FL +       + L     PD    IGR+LH+RY  G A +KL   L+ R L +  T RNL T  K+
Sbjct:   94 ERKAHHVYFLLEPPTEQQVEALMSKGLPDRLAVIGRDLHIRYADGVANTKLTPALILRTLGSHGTGRNLNTVEKL 168          
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: A0A3L8PRZ1_9ACTN (DUF1697 domain-containing protein n=1 Tax=Aeromicrobium phragmitis TaxID=2478914 RepID=A0A3L8PRZ1_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 1.150e-6
Identity = 36/74 (48.65%), Postives = 39/74 (52.70%), Query Frame = 1
Query:    1 EPKYHHIMFLAD----EAPTDTADRLGDHSPDEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPT 210
            EPK  HI FLA     +A  D A R  D  PD    IGR+LHVR+  G A SKL    V R L    TARNL T
Sbjct:   94 EPKLAHIYFLASTPAPDAVADVASR--DLGPDLAQVIGRDLHVRFADGAAASKLTAPFVARVLGVPGTARNLRT 165          
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: M7A372_9ACTN (Uncharacterized protein n=2 Tax=Gordonia TaxID=2053 RepID=M7A372_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 3.100e-6
Identity = 30/76 (39.47%), Postives = 38/76 (50.00%), Query Frame = 1
Query:    1 EPKYHHIMFLADEAPTDTADRL--GDHSPDEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPTCRKI 222
            E K+ HI FL      D +  L   D   DE V IG +LH+RY  G A +KL   ++ R L    T RNL T R +
Sbjct:   94 EEKFAHIYFLTGTPTADASHALVDKDFGDDELVVIGADLHIRYANGVAGTKLTAPVIARTLGVQGTGRNLRTVRTL 169          
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: A0A8J7KR81_9ACTN (Uncharacterized protein (DUF1697 family) n=1 Tax=Longispora fulva TaxID=619741 RepID=A0A8J7KR81_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 6.140e-6
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1
Query:    1 EPKYHHIMFLADEAPTDTADRLGD---HSPDEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPTCRKI 222
            +PK  H+ FL+  APT       D    +PDE V  G E  + Y  G+ RSKL N+L++RRL  + TARN  T  K+
Sbjct:   94 DPKSVHVDFLS-AAPTKAKLATLDPAPFAPDECVVDGTEAFLWYANGSGRSKLTNDLLERRLGVVGTARNWNTVTKL 169          
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Match: A0A0U4C5K2_9ACTN (Uncharacterized protein n=1 Tax=Aeromicrobium erythreum TaxID=2041 RepID=A0A0U4C5K2_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 1.140e-5
Identity = 30/76 (39.47%), Postives = 39/76 (51.32%), Query Frame = 1
Query:    1 EPKYHHIMFLADEAPTDT--ADRLGDHSPDEYVAIGRELHVRYPQGTARSKLVNNLVDRRLDTIATARNLPTCRKI 222
            EPK  H+ FL DE   D   A    D   D+   +GR+LHVRY  G A S++    V R L    T RNL T +++
Sbjct:   92 EPKLSHVYFLLDEPTPDAVRAFEAEDWRGDDVRVLGRDLHVRYRDGVAGSRITPARVRRLLGHHGTGRNLTTVQRL 167          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128667.5758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7W1D2E5_9ACTN1.470e-944.16DUF1697 domain-containing protein n=1 Tax=Actinomy... [more]
UPI001C6E33323.760e-943.59DUF1697 domain-containing protein n=1 Tax=unclassi... [more]
A0A1T4YZR5_9ACTN1.410e-841.46Uncharacterized conserved protein, DUF1697 family ... [more]
A0A7V8WJK0_9ACTN1.570e-841.56DUF1697 domain-containing protein n=1 Tax=Actinomy... [more]
A0A3D2J3V3_9CHLR6.350e-739.51DUF1697 domain-containing protein n=1 Tax=Ktedonob... [more]
A0A838X7T9_9ACTN1.130e-638.67DUF1697 domain-containing protein n=2 Tax=Actinomy... [more]
A0A3L8PRZ1_9ACTN1.150e-648.65DUF1697 domain-containing protein n=1 Tax=Aeromicr... [more]
M7A372_9ACTN3.100e-639.47Uncharacterized protein n=2 Tax=Gordonia TaxID=205... [more]
A0A8J7KR81_9ACTN6.140e-641.56Uncharacterized protein (DUF1697 family) n=1 Tax=L... [more]
A0A0U4C5K2_9ACTN1.140e-539.47Uncharacterized protein n=1 Tax=Aeromicrobium eryt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128667contigM-pyrifera_M_contig128667:258..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.6497684-CDS-M-pyrifera_M_contig128667:257..4791622815799.6497684-CDS-M-pyrifera_M_contig128667:257..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128667 258..479 -
1692277574.9363012-CDS-M-pyrifera_M_contig128667:257..4791692277574.9363012-CDS-M-pyrifera_M_contig128667:257..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128667 258..479 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.6630814-UTR-M-pyrifera_M_contig128667:479..5001622815799.6630814-UTR-M-pyrifera_M_contig128667:479..500Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128667 480..500 -
1692277574.9501607-UTR-M-pyrifera_M_contig128667:479..5001692277574.9501607-UTR-M-pyrifera_M_contig128667:479..500Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128667 480..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128667.5758.1prot_M-pyrifera_M_contig128667.5758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128667 258..479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128667.5758.1

>prot_M-pyrifera_M_contig128667.5758.1 ID=prot_M-pyrifera_M_contig128667.5758.1|Name=mRNA_M-pyrifera_M_contig128667.5758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MFLADEAPTDTADRLGDHSPDEYVAIGRELHVRYPQGTARSKLVNNLVDR
RLDTIATARNLPTCRKIAAALSD*
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mRNA from alignment at M-pyrifera_M_contig128667:258..500-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128667.5758.1 ID=mRNA_M-pyrifera_M_contig128667.5758.1|Name=mRNA_M-pyrifera_M_contig128667.5758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig128667:258..500- (Macrocystis pyrifera P11B4 male)
GAGCCGAAGTACCACCACATCATGTTCCTCGCCGACGAGGCACCGACCGA CACCGCCGACCGGTTGGGCGACCACTCCCCCGACGAATACGTGGCCATCG GCCGCGAACTCCACGTGCGCTATCCGCAGGGGACGGCCCGCTCCAAACTC GTCAACAATCTCGTCGATCGCCGACTCGACACGATCGCGACTGCCCGCAA CCTCCCGACCTGCCGCAAGATCGCGGCGGCGCTGTCCGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128667:258..500-

>mRNA_M-pyrifera_M_contig128667.5758.1 ID=mRNA_M-pyrifera_M_contig128667.5758.1|Name=mRNA_M-pyrifera_M_contig128667.5758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig128667:258..500- (Macrocystis pyrifera P11B4 male)
ATGTTCCTCGCCGACGAGGCACCGACCGACACCGCCGACCGGTTGGGCGA
CCACTCCCCCGACGAATACGTGGCCATCGGCCGCGAACTCCACGTGCGCT
ATCCGCAGGGGACGGCCCGCTCCAAACTCGTCAACAATCTCGTCGATCGC
CGACTCGACACGATCGCGACTGCCCGCAACCTCCCGACCTGCCGCAAGAT
CGCGGCGGCGCTGTCCGACTGAATGTTCCTCGCCGACGAGGCACCGACCG
ACACCGCCGACCGGTTGGGCGACCACTCCCCCGACGAATACGTGGCCATC
GGCCGCGAACTCCACGTGCGCTATCCGCAGGGGACGGCCCGCTCCAAACT
CGTCAACAATCTCGTCGATCGCCGACTCGACACGATCGCGACTGCCCGCA
ACCTCCCGACCTGCCGCAAGATCGCGGCGGCGCTGTCCGACTGA
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