mRNA_M-pyrifera_M_contig128666.5757.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128666.5757.1
Unique NamemRNA_M-pyrifera_M_contig128666.5757.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: A0A7S0WIA5_9CHLO (Ubiquitinyl hydrolase 1 n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WIA5_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 1.020e-20
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 1
Query:    1 DLEVSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHLEPEKGVVEGAGSDEEGSSSPXXXXXXXXXXXXPYTLQAILIHHGTTGGGHYFAYVRRGKEEFVEFND 459
            DL++ V G + +  S  ++   E+L+G  +++ E  G + DA+KGV    LPPVL + LKR+ YD++R A VK +  + F D L LEP +  +        GSS P             Y L A+L+H G   GGHY+A++R G+E+++ F+D
Sbjct:  326 DLQLDVRGCATIADSFLKYCEEEVLSGDNKYNAEGHGLQ-DAKKGVKFVDLPPVLQLQLKRFEYDMHRDAMVKINDRYEFSDVLDLEPHRAALFA------GSSDPSVPAR--------YKLFAVLVHSGGVHGGHYYAFIRPGREQWLRFDD 463          
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: A0A0R3WZH7_HYDTA (USP domain-containing protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WZH7_HYDTA)

HSP 1 Score: 96.3 bits (238), Expect = 5.030e-20
Identity = 53/173 (30.64%), Postives = 88/173 (50.87%), Query Frame = 1
Query:    4 LEVSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHLEPEKGVVEGAGSDEEGSS-------------SPXXXXXXXXXXXXPYTLQAILIHHGTTGGGHYFAYV-----RRGKEEFVEFNDAIV 468
            ++V +   S L +SL +++  +LL G   +HCE C  +  A K + +  LPP+L+IHLKR+ +D  R   +K++  F FP  L + P    VEG  S ++G S             SP             YTL+ +++HHG  G GHY++++       GK ++ +++D  V
Sbjct: 2025 IDVDIQNRSTLCESLEEYVKSDLLEGDNAYHCEDCNKKVSARKRMCIKRLPPILVIHLKRFNFDWERHIAIKNNDRFSFPSELDMAPY--TVEGVASRDQGPSVGESSGICESCPASPGAPETKAPRHSTRYTLRGVIVHHGQAGAGHYYSFILHHNHETGKSQWYKYDDTRV 2195          
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: UPI001CFD6BE6 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD6BE6)

HSP 1 Score: 90.5 bits (223), Expect = 4.930e-18
Identity = 54/165 (32.73%), Postives = 85/165 (51.52%), Query Frame = 1
Query:    1 DLEVSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHLEPEKGVVEGAGSDEEGSSSPXXXXXXXXXXXXPYTLQAILIHHGTTGGGHYFAYVRRGKEEFVEFNDAIVRPLSGAALE 495
            DL++ V GL  L+ S+ +F   E L+G  ++ CE C  + DA+KG+ L   P +L +HLKR+  D    + +K +    FP  L +      V  A S     +S              YTLQ+++IH G+ GGGHY++Y + G   + EFND+ V  +  + +E
Sbjct:  388 DLQLPVRGLKHLDASIAEFQFEECLSGVNQYFCEKCNCKVDAKKGIKLLRTPDILSLHLKRFDIDYTTFSRIKLNNQLVFPHVLDM---NKYVNSAAS----FTSNELDVESLEAKYNIYTLQSVVIHSGSAGGGHYYSYEKVGNHWY-EFNDSTVTKIEESQVE 544          
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: A0A6A5BMH9_NAEFO (USP domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BMH9_NAEFO)

HSP 1 Score: 89.0 bits (219), Expect = 1.710e-17
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:    1 DLEVSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHLEPEKGVVEGAGSDEEGSSSPXXXXXXXXXXXXPYTLQAILIHHGTTGGGHYFAYVRRGKEEFVEFNDAIVRPLSGAALE 495
            DL++ V  L  L+ S+ +F   E L+G  ++ CE C  + DA+KG+ L   P +L +HLKR+  D    + +K + P  FP  L +           S E    S              YTLQ+++IH G+ GGGHY++Y + G   + EFND+ V  +  + +E
Sbjct:  400 DLQLPVRRLKHLDASIAEFQFEECLSGVNQYFCEKCNCKVDAKKGIKLLRTPDILSLHLKRFDIDYATFSRIKLNDPLVFPHVLDMNKHLNSAASFTSHELDIES-------LDSKHNIYTLQSVVIHSGSAGGGHYYSYEKVGNHWY-EFNDSTVTRIEESQVE 556          
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: A0A0L0DFW0_THETB (USP domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DFW0_THETB)

HSP 1 Score: 87.8 bits (216), Expect = 4.510e-17
Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 1
Query:    4 LEVSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHLEPEKGVVEGAGSDEEGSSSPXXXXXXXXXXXXPYTLQAILIHHGTTGGGHYFAYVRRGKEEFVEFNDAIVRPLSGAAL 492
            L + +   + L +SL  F+  E+L G  ++ C AC    DA K + +  LPPVL++HLKR+ +D+      K ++   +P  L + P   ++E     E G++               Y L+ +L+H G+   GHY++++R G  E+ EFND +V P     L
Sbjct: 1649 LSLEIKNKANLAESLELFVQGEMLDGANQYKCSACDAHVDAIKRLVIADLPPVLVLHLKRFDFDLMTLTRTKINSRLAYPHELDMAPY--MIEDP-EREPGATQ--------------YQLRGVLVHLGSADSGHYYSFIRTGSAEWFEFNDTLVEPFDARDL 1794          
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: A0A1I7Y633_9BILA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7Y633_9BILA)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-16
Identity = 55/172 (31.98%), Postives = 87/172 (50.58%), Query Frame = 1
Query:   13 SVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHL-----EPEKG-------VVEGAGSDEEGSS---SPXXXXXXXXXXXXPYTLQAILIHHGTTGGGHYFAYVRR-GKEEFVEFNDAIVRPLS 480
            S+     L ++LT F++PELLTG  ++ C  CG+ +  EKG+ +T  P  L I LKR+ +D+     VK +    FPD L L     EP+         V +  G D++ +    +              Y L +I++H G+  GGHYFAYV+   ++++  FND++V   S
Sbjct:  238 SIGAFKTLREALTHFITPELLTGENKYSCGTCGSLQVGEKGLRITEFPYFLAIQLKRFDFDVGTGHRVKLNNRVSFPDILDLNDIIYEPDSAKKSYSDVVKKSTGEDDDEAGHELNQQLAKEMLARGQNVYELYSIMVHQGSPTGGHYFAYVKNMDQQKWFCFNDSVVTSAS 409          
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: A0A7S0JZZ6_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JZZ6_CAFRO)

HSP 1 Score: 79.3 bits (194), Expect = 4.010e-16
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   10 VSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHL 258
            + V G    E ++ +F   ELLTGG++WHC++CG RRDA K +TL+  PPVLM+HLKR+ +D+      K    F FP  L L
Sbjct:    1 LEVRGSGTAEAAVRRFHGAELLTGGDQWHCDSCGKRRDAVKSMTLSAAPPVLMLHLKRFGFDMATMRRAKLMDSFLFPAELRL 83          
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: A9V5S8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V5S8_MONBE)

HSP 1 Score: 84.7 bits (208), Expect = 5.280e-16
Identity = 47/159 (29.56%), Postives = 77/159 (48.43%), Query Frame = 1
Query:    1 DLEVSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHLEP---------EKGVVEGAGSDEEGSSSPXXXXXXXXXXXXP--------YTLQAILIHHGTTGGGHYFAYVR 426
            +L + V+    + ++L   +  E+ TG  ++ C+ CG + DA K   + TLPP+LM+ LKR+ YD+     VKH+  F FP  L LEP         E+   + A SD + ++              P        Y LQ +++H G+   GHY+++ R
Sbjct: 1768 NLSLPVMSHDTMHEALLDSVQGEMFTGANQYRCQECGVKVDAMKRSCIKTLPPMLMVQLKRFGYDLQTFQPVKHNVRFEFPQELDLEPYTYGYLTQKERQEAQEAASDADNAADAVDLGPANSEGVSPAEIPPCCKYRLQGVVVHMGSASAGHYYSFSR 1926          
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: A0A0P1ACA6_PLAHL (Ubiquitinyl hydrolase 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACA6_PLAHL)

HSP 1 Score: 84.3 bits (207), Expect = 6.940e-16
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = 1
Query:    1 DLEVSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHLEPEKGVVEGAGSDEEGSSSPXXXXXXXXXXXXPYTLQAILIHHGTTGGGHYFAYVRRGKE 438
            DL++ V G   L QS  +++  ELL G  ++  E  G ++DA+KG+   TLPPVL I LKR+ YD  R   VK H  F +P TL L+  + + +    DE+  +               Y L ++L+H G   GGHY+ ++R GK+
Sbjct:  362 DLQLDVKGCKDLMQSFRKYVEVELLEGDNQYEAEGHG-KQDAKKGIEFLTLPPVLNIQLKRFEYDPMRDGMVKVHDRFEYPKTLVLD--EFIAQ---KDEKTKNDTSRYC---------YHLHSVLVHSGDVHGGHYYVFIRPGKQ 492          
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Match: A0A2P6NWC5_9EUKA (Ubiquitinyl hydrolase 1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NWC5_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 7.210e-16
Identity = 55/163 (33.74%), Postives = 82/163 (50.31%), Query Frame = 1
Query:    4 LEVSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTTLPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHLEPE--KGVVEGAGSDEEGSSSPXXXXXXXXXXXXPYTLQAILIHHGTTGGGHYFAYVRR-----GKE-EFVEFNDAIV 468
            L + V G   + +SL  ++  ELL G  ++HC  C  + DA K   +  LP  L+IH KR+ +D+     +K +  F FP  ++LEP   +G+    GS E  S S              Y L  IL+H GT  GGHY++++R      GKE ++ +FND  V
Sbjct: 1498 LSLDVKGKRSIYESLASYVQGELLEGDNKYHCSQCDKKVDAIKRTCIKKLPDNLIIHAKRFEFDLELMRRIKVNDYFEFPHEVNLEPYTLEGLNRREGSSENVSVS-------TDIDSYKYHLAGILVHTGTADGGHYYSFIREREAADGKERKWYQFNDTDV 1653          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128666.5757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0WIA5_9CHLO1.020e-2035.95Ubiquitinyl hydrolase 1 n=1 Tax=Chlamydomonas leio... [more]
A0A0R3WZH7_HYDTA5.030e-2030.64USP domain-containing protein n=1 Tax=Hydatigena t... [more]
UPI001CFD6BE64.930e-1832.73uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BMH9_NAEFO1.710e-1732.12USP domain-containing protein n=1 Tax=Naegleria fo... [more]
A0A0L0DFW0_THETB4.510e-1730.06USP domain-containing protein n=1 Tax=Thecamonas t... [more]
A0A1I7Y633_9BILA1.410e-1631.98Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Stei... [more]
A0A7S0JZZ6_CAFRO4.010e-1645.78Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A9V5S8_MONBE5.280e-1629.56Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A0P1ACA6_PLAHL6.940e-1635.62Ubiquitinyl hydrolase 1 n=1 Tax=Plasmopara halsted... [more]
A0A2P6NWC5_9EUKA7.210e-1633.74Ubiquitinyl hydrolase 1 n=1 Tax=Planoprotostelium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128666contigM-pyrifera_M_contig128666:6..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue2.7e-16
Seed eggNOG ortholog4792.ETI35629
KEGG koko:K11838
KEGG Pathwayko04068,ko05168,ko05169,ko05203,map04068,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin-specific protease C-terminal
EggNOG OGs3QCBA@4776,COG5077@1,KOG1863@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.6052454-CDS-M-pyrifera_M_contig128666:5..5001622815799.6052454-CDS-M-pyrifera_M_contig128666:5..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128666 6..500 +
1692277574.9206152-CDS-M-pyrifera_M_contig128666:5..5001692277574.9206152-CDS-M-pyrifera_M_contig128666:5..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128666 6..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128666.5757.1prot_M-pyrifera_M_contig128666.5757.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128666 6..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128666.5757.1

>prot_M-pyrifera_M_contig128666.5757.1 ID=prot_M-pyrifera_M_contig128666.5757.1|Name=mRNA_M-pyrifera_M_contig128666.5757.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
DLEVSVLGLSRLEQSLTQFLSPELLTGGERWHCEACGTRRDAEKGVTLTT
LPPVLMIHLKRYIYDINRRAYVKHHAPFHFPDTLHLEPEKGVVEGAGSDE
EGSSSPSSPSSPSSPSSPPYTLQAILIHHGTTGGGHYFAYVRRGKEEFVE
FNDAIVRPLSGAALE
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mRNA from alignment at M-pyrifera_M_contig128666:6..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128666.5757.1 ID=mRNA_M-pyrifera_M_contig128666.5757.1|Name=mRNA_M-pyrifera_M_contig128666.5757.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig128666:6..500+ (Macrocystis pyrifera P11B4 male)
GACCTGGAAGTGAGTGTGCTAGGCCTCAGCCGCCTCGAACAGAGCTTGAC GCAGTTTCTCTCCCCAGAACTCCTCACTGGAGGGGAACGATGGCACTGTG AAGCATGTGGAACACGCAGAGATGCAGAAAAGGGCGTCACACTCACCACC TTGCCTCCTGTGCTCATGATCCACCTCAAACGGTACATCTACGACATCAA CCGAAGAGCTTACGTCAAGCACCATGCCCCCTTCCATTTCCCAGATACAC TCCACCTTGAACCAGAAAAAGGGGTGGTGGAAGGTGCGGGGAGTGATGAG GAGGGGTCTTCCTCCCCTTCCTCCCCTTCCTCACCTTCCTCCCCTTCCTC CCCACCTTACACCTTGCAAGCCATTCTCATCCACCACGGCACCACGGGGG GAGGACACTACTTTGCCTACGTGCGACGAGGCAAAGAAGAGTTTGTAGAA TTCAACGATGCCATCGTCCGGCCCCTCTCAGGAGCCGCTCTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128666:6..500+

>mRNA_M-pyrifera_M_contig128666.5757.1 ID=mRNA_M-pyrifera_M_contig128666.5757.1|Name=mRNA_M-pyrifera_M_contig128666.5757.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig128666:6..500+ (Macrocystis pyrifera P11B4 male)
GACCTGGAAGTGAGTGTGCTAGGCCTCAGCCGCCTCGAACAGAGCTTGAC
GCAGTTTCTCTCCCCAGAACTCCTCACTGGAGGGGAACGATGGCACTGTG
AAGCATGTGGAACACGCAGAGATGCAGAAAAGGGCGTCACACTCACCACC
TTGCCTCCTGTGCTCATGATCCACCTCAAACGGTACATCTACGACATCAA
CCGAAGAGCTTACGTCAAGCACCATGCCCCCTTCCATTTCCCAGATACAC
TCCACCTTGAACCAGAAAAAGGGGTGGTGGAAGGTGCGGGGAGTGATGAG
GAGGGGTCTTCCTCCCCTTCCTCCCCTTCCTCACCTTCCTCCCCTTCCTC
CCCACCTTACACCTTGCAAGCCATTCTCATCCACCACGGCACCACGGGGG
GAGGACACTACTTTGCCTACGTGCGACGAGGCAAAGAAGAGTTTGTAGAA
TTCAACGATGCCATCGTCCGGCCCCTCTCAGGAGCCGCTCTCGAGGACCT
GGAAGTGAGTGTGCTAGGCCTCAGCCGCCTCGAACAGAGCTTGACGCAGT
TTCTCTCCCCAGAACTCCTCACTGGAGGGGAACGATGGCACTGTGAAGCA
TGTGGAACACGCAGAGATGCAGAAAAGGGCGTCACACTCACCACCTTGCC
TCCTGTGCTCATGATCCACCTCAAACGGTACATCTACGACATCAACCGAA
GAGCTTACGTCAAGCACCATGCCCCCTTCCATTTCCCAGATACACTCCAC
CTTGAACCAGAAAAAGGGGTGGTGGAAGGTGCGGGGAGTGATGAGGAGGG
GTCTTCCTCCCCTTCCTCCCCTTCCTCACCTTCCTCCCCTTCCTCCCCAC
CTTACACCTTGCAAGCCATTCTCATCCACCACGGCACCACGGGGGGAGGA
CACTACTTTGCCTACGTGCGACGAGGCAAAGAAGAGTTTGTAGAATTCAA
CGATGCCATCGTCCGGCCCCTCTCAGGAGCCGCTCTCGAG
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