mRNA_M-pyrifera_M_contig128661.5756.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128661.5756.1
Unique NamemRNA_M-pyrifera_M_contig128661.5756.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: A0A812R4U4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812R4U4_9DINO)

HSP 1 Score: 97.8 bits (242), Expect = 2.300e-21
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    4 LQARKIFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEVT 258
            + +RK  ELN RHPIV+ LL +V+ D   +    KD+  ALYD ALLNSGF +DD+K FS+R++RL+Q +L L++L+LEPE+EVT
Sbjct:  568 MSSRKTMELNPRHPIVTKLLTLVQADDTQDAQNTKDVAWALYDAALLNSGFQMDDSKGFSERMFRLMQQNLGLENLELEPELEVT 652
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: A0A196S8J8_BLAHN (Endoplasmin-like protein n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S8J8_BLAHN)

HSP 1 Score: 94.7 bits (234), Expect = 2.810e-20
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    4 LQARKIFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEV 255
            L+A KI  LN RHPI+SNL  +VEEDP  E+  A+D+   LYD++L+NSGF ID+  +F+ R+Y L++ SL LDSLDLEPE+E+
Sbjct:  683 LKAHKIMLLNPRHPIISNLKQLVEEDP--ESDVARDLANLLYDSSLMNSGFMIDEPNEFATRLYGLMKESLQLDSLDLEPEVEL 764
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: H3GCK5_PHYRM (HATPase_c domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=H3GCK5_PHYRM)

HSP 1 Score: 92.0 bits (227), Expect = 2.480e-19
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:   19 IFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEV 255
            I ELN RHPIVS L G++  DP  E  E KD+   LYDTAL+NSGF + D  QFS R++R+++SS+ +DSL+LEPEIEV
Sbjct:  727 ILELNPRHPIVSKLNGLMVSDP--EKDETKDLAWLLYDTALVNSGFDMADTNQFSTRIHRIMKSSMGIDSLELEPEIEV 803
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: A0A7S3LJG6_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3LJG6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.240e-19
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    1 MLQARKIFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEV 255
            M+ ++K  E+N RHPI++ L  +++ED D+E  EAKDI   LYDTA++NSGF   + K FSQR++RL+QS L L+SLDL  E+EV
Sbjct:  659 MMMSQKTMEINVRHPIIAELKKLMDEDKDNE--EAKDIAWLLYDTAMINSGFDFGNPKDFSQRMFRLMQSGLKLESLDLLDEVEV 741
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: W2RBY3_PHYPN (HATPase_c domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2RBY3_PHYPN)

HSP 1 Score: 90.1 bits (222), Expect = 1.170e-18
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:   19 IFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEV 255
            I ELN RHPIVS L  ++  DP+ E T  KD+   LYDTAL+NSGF + D  QFS RV+R+++SS+ +DSL+LEPEIEV
Sbjct:  719 ILELNPRHPIVSKLNELMVSDPEKEET--KDLAWLLYDTALINSGFDMTDTTQFSTRVHRIMKSSMGIDSLELEPEIEV 795
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: UPI000711C6D5 (chaperone HSP90 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711C6D5)

HSP 1 Score: 89.0 bits (219), Expect = 1.720e-18
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    4 LQARKIFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEV 255
            +++ KI E+N RHPI+ NL  +VEEDP  E+  A+D    LYD++L+NSGF I++   F+ R+Y L++ SL +DSL+LEPEIE+
Sbjct:  262 MRSHKIMEVNPRHPIIVNLKNLVEEDP--ESDVARDFANLLYDSSLMNSGFMIEEPNTFATRLYSLMKESLQIDSLELEPEIEI 343
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: A0A8J5IW23_9STRA (HATPase_c domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IW23_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.090e-18
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   19 IFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEVTLD 264
            I ELN RHPIVS L  ++  DP+ E T  KD+   LYDTAL+NSGF I +   FS RV+R+++SS+ +DSL+LEPEIE+  D
Sbjct:  466 ILELNPRHPIVSKLNELMVSDPEKEET--KDLAWLLYDTALINSGFDISETNHFSTRVHRIMKSSMGIDSLELEPEIEIPQD 545
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: D8LYP1_BLAHO (HATPase_c domain-containing protein n=3 Tax=Blastocystis hominis TaxID=12968 RepID=D8LYP1_BLAHO)

HSP 1 Score: 88.2 bits (217), Expect = 5.520e-18
Identity = 42/84 (50.00%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    4 LQARKIFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEV 255
            L++ KI E+N RHPI+S+L  + +EDP  E+  A+D    LYD+AL+NSGF I++  +F+ R+Y L++ SL L+S++LEPEIEV
Sbjct:  676 LKSHKIMEINPRHPIISSLQKMADEDP--ESDVARDFANLLYDSALMNSGFMIEEPNEFATRLYSLMKESLQLESMELEPEIEV 757
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: A0A2P4YRQ7_9STRA (Heat shock protein 90 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YRQ7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.720e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   19 IFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEVTLD 264
            I ELN RHPIVS L  ++  D + E T  KD+   LYDTAL+NSGF + +   FS+RV+R+++SS+ +DSL+LEPEIEV ++
Sbjct:  213 ILELNPRHPIVSKLNELMVSDSEKEET--KDLAWLLYDTALINSGFDMSETNHFSERVHRIMKSSMGIDSLELEPEIEVPVE 292
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BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Match: A0A2D4BPP1_PYTIN (HATPase_c domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPP1_PYTIN)

HSP 1 Score: 87.0 bits (214), Expect = 1.410e-17
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   19 IFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNSGFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEV 255
            I ELN RHPIVS L  + E  PD E T  KD+   LYD AL+NSGF ++D   F+ RVYR+++SS+ L+SL+LEPEIEV
Sbjct:  721 ILELNPRHPIVSKLNTLFESKPDDEET--KDLAWLLYDAALINSGFDMNDFDHFASRVYRIMKSSMGLESLELEPEIEV 797
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128661.5756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812R4U4_9DINO2.300e-2154.12Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A196S8J8_BLAHN2.810e-2055.95Endoplasmin-like protein n=2 Tax=Blastocystis sp. ... [more]
H3GCK5_PHYRM2.480e-1958.23HATPase_c domain-containing protein n=10 Tax=Phyto... [more]
A0A7S3LJG6_9STRA6.240e-1952.94Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
W2RBY3_PHYPN1.170e-1858.23HATPase_c domain-containing protein n=19 Tax=Phyto... [more]
UPI000711C6D51.720e-1850.00chaperone HSP90 n=1 Tax=Blastocystis sp. subtype 4... [more]
A0A8J5IW23_9STRA2.090e-1854.88HATPase_c domain-containing protein n=1 Tax=Phytop... [more]
D8LYP1_BLAHO5.520e-1850.00HATPase_c domain-containing protein n=3 Tax=Blasto... [more]
A0A2P4YRQ7_9STRA9.720e-1852.44Heat shock protein 90 (Fragment) n=1 Tax=Phytophth... [more]
A0A2D4BPP1_PYTIN1.410e-1756.96HATPase_c domain-containing protein n=1 Tax=Pythiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128661contigM-pyrifera_M_contig128661:32..379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog164328.Phyra73199
Preferred nameHSP90B
KEGG koko:K04079,ko:K09487
KEGG Pathwayko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map04918,map05200,map05215,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0002790,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005788,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006950,GO:0006970,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009306,GO:0009409,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009888,GO:0009934,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010073,GO:0010075,GO:0010243,GO:0010498,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019941,GO:0022603,GO:0030054,GO:0030163,GO:0030433,GO:0031090,GO:0031974,GO:0032501,GO:0032502,GO:0032940,GO:0033036,GO:0033554,GO:0034976,GO:0036503,GO:0040008,GO:0042221,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046903,GO:0048046,GO:0048507,GO:0048509,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051716,GO:0055044,GO:0065007,GO:0070013,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098588,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700
EggNOG free text desc.Hsp90 protein
EggNOG OGs3Q952@4776,COG0326@1,KOG0020@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147
Exons1
Model size348
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.5711508-CDS-M-pyrifera_M_contig128661:31..3791622815799.5711508-CDS-M-pyrifera_M_contig128661:31..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128661 32..379 +
1692277574.9007745-CDS-M-pyrifera_M_contig128661:31..3791692277574.9007745-CDS-M-pyrifera_M_contig128661:31..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128661 32..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128661.5756.1prot_M-pyrifera_M_contig128661.5756.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128661 32..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128661.5756.1

>prot_M-pyrifera_M_contig128661.5756.1 ID=prot_M-pyrifera_M_contig128661.5756.1|Name=mRNA_M-pyrifera_M_contig128661.5756.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MLQARKIFELNARHPIVSNLLGVVEEDPDHENTEAKDIVQALYDTALLNS
GFTIDDNKQFSQRVYRLLQSSLSLDSLDLEPEIEVTLDEEEEDEEEEEEY
EDEEEEEGDDFEDEL*
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mRNA from alignment at M-pyrifera_M_contig128661:32..379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128661.5756.1 ID=mRNA_M-pyrifera_M_contig128661.5756.1|Name=mRNA_M-pyrifera_M_contig128661.5756.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig128661:32..379+ (Macrocystis pyrifera P11B4 male)
ATGTTGCAAGCAAGAAAGATCTTTGAACTCAACGCAAGGCATCCTATTGT
CTCCAACCTTCTCGGCGTGGTGGAAGAAGATCCAGATCACGAAAACACCG
AAGCCAAGGACATTGTTCAAGCTCTCTACGACACTGCCCTTCTCAACTCT
GGATTCACCATCGATGACAACAAGCAATTCTCCCAACGCGTGTACCGCCT
TCTCCAATCCTCTCTCTCTCTCGATTCTCTTGATCTTGAACCCGAAATTG
AAGTCACTCTTGACGAAGAAGAAGAAGATGAGGAGGAGGAAGAAGAGTAT
GAAGATGAGGAGGAAGAGGAAGGAGATGACTTTGAAGATGAATTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128661:32..379+

>mRNA_M-pyrifera_M_contig128661.5756.1 ID=mRNA_M-pyrifera_M_contig128661.5756.1|Name=mRNA_M-pyrifera_M_contig128661.5756.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig128661:32..379+ (Macrocystis pyrifera P11B4 male)
ATGTTGCAAGCAAGAAAGATCTTTGAACTCAACGCAAGGCATCCTATTGT
CTCCAACCTTCTCGGCGTGGTGGAAGAAGATCCAGATCACGAAAACACCG
AAGCCAAGGACATTGTTCAAGCTCTCTACGACACTGCCCTTCTCAACTCT
GGATTCACCATCGATGACAACAAGCAATTCTCCCAACGCGTGTACCGCCT
TCTCCAATCCTCTCTCTCTCTCGATTCTCTTGATCTTGAACCCGAAATTG
AAGTCACTCTTGACGAAGAAGAAGAAGATGAGGAGGAGGAAGAAGAGTAT
GAAGATGAGGAGGAAGAGGAAGGAGATGACTTTGAAGATGAATTGTAAAT
GTTGCAAGCAAGAAAGATCTTTGAACTCAACGCAAGGCATCCTATTGTCT
CCAACCTTCTCGGCGTGGTGGAAGAAGATCCAGATCACGAAAACACCGAA
GCCAAGGACATTGTTCAAGCTCTCTACGACACTGCCCTTCTCAACTCTGG
ATTCACCATCGATGACAACAAGCAATTCTCCCAACGCGTGTACCGCCTTC
TCCAATCCTCTCTCTCTCTCGATTCTCTTGATCTTGAACCCGAAATTGAA
GTCACTCTTGACGAAGAAGAAGAAGATGAGGAGGAGGAAGAAGAGTATGA
AGATGAGGAGGAAGAGGAAGGAGATGACTTTGAAGATGAATTGTAA
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