mRNA_M-pyrifera_M_contig12866.5755.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12866.5755.1
Unique NamemRNA_M-pyrifera_M_contig12866.5755.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: D7FRE3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE3_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.110e-47
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:    4 APASEANLNLVPQQGPPSVTVAEVESAEQKAAESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQSAAPGGN 285
            APASEA+L  VPQQG PSV VAEVESAEQKA ESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLR+NPQSA P  N
Sbjct:   17 APASEASL--VPQQGAPSVAVAEVESAEQKATESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRNNPQSAPPAAN 108
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BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: A0A7R9Y8P1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8P1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.960e-27
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:   13 SEANLNLVPQQGPPSVTVAEVESAEQKAAESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQSAA 273
            +EA    V +   P   V+E +    +AA+++QDR+N+QSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWL  YL+++NPQ ++
Sbjct:   21 AEATKKAVEEAAGPPAAVSEAD----QAAQAVQDRMNLQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLAAYLIKNNPQGSS 103
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BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: A0A812XI25_SYMMI (Dpy30 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XI25_SYMMI)

HSP 1 Score: 102 bits (255), Expect = 1.440e-26
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:  100 ESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQS 267
            E+ QD+LN+Q+LPIRAYLDQTVVPILLDGMSALVKERPPNPVEWL  YLL+HNPQ+
Sbjct:    9 EAAQDKLNLQALPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLSTYLLKHNPQN 64
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BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: A0A7S2GF22_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GF22_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.710e-26
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   91 KAAESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQSAAPGGN 285
            KAAE +Q ++N+Q+LPIRAYLDQTVVPILLDGMSALVKERPPNPVEWL  YL+++NPQ ++   N
Sbjct:   71 KAAEQVQAKMNLQALPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLATYLIKNNPQGSSAAAN 135
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BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: A0A482SE97_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SE97_9ARCH)

HSP 1 Score: 100 bits (248), Expect = 1.670e-25
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   91 KAAESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQS 267
            K  E+ Q++LN+Q+LPIRAYLDQTVVP+LLDGMSALVKERPPNP+EWL  YLL+HNPQ+
Sbjct:    6 KDLEAAQEKLNLQALPIRAYLDQTVVPLLLDGMSALVKERPPNPIEWLAAYLLKHNPQN 64
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BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: A0A0P1B2Z2_PLAHL (Dpy-30 like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2Z2_PLAHL)

HSP 1 Score: 102 bits (253), Expect = 3.130e-25
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:   88 QKAAESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQSAAPGGN 285
            +  AE++QD++ VQ+LPIRAYLDQTVVPILL GMSALVKERPPNP+EWL  YL+++NPQ A+ GG+
Sbjct:   86 ESVAENVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQGASGGGD 151
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BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: A0A836CC20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC20_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.920e-25
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:   52 PSVTVAEVESAE---QKAAESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQ 264
            P ++  EVE AE   +K AE+LQ+RLN+Q+LPIRAYLDQTVVPILLDGM+AL KERPPNPVEWL +YLLR+NPQ
Sbjct:  677 PPISAEEVEDAEKLAEKNAEALQERLNMQTLPIRAYLDQTVVPILLDGMAALAKERPPNPVEWLASYLLRNNPQ 750
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BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: G4ZVC7_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZVC7_PHYSP)

HSP 1 Score: 99.8 bits (247), Expect = 3.190e-24
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   70 EVESAEQKAAESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQ 264
            EV++AE  AAES+QD++ VQ+LPIRAYLDQTVVPILL GMSALVKERPPNP+EWL  YL+++NPQ
Sbjct:   91 EVKAAE-PAAESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQ 154
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BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: A0A662XX81_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XX81_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.370e-24
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:   70 EVESAEQKAAESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQSAAPGGN 285
            EV+ AEQ AAES+Q+++ VQ+LPIRAYLDQTVVPILL GMSALVKERPPNP+EWL  YL+++NPQ   P G+
Sbjct:  117 EVKGAEQ-AAESVQEKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQG--PSGS 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Match: A0A662X0K8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0K8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.030e-24
Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:   70 EVESAEQKAAESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRHNPQSAAPGG 282
            EV+ AEQ AAES+Q+++ VQ+LPIRAYLDQTVVPILL GMSALVKERPPNP+EWL  YL+++NPQ  +  G
Sbjct:  167 EVKGAEQ-AAESVQEKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQGPSGSG 236
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12866.5755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE3_ECTSI1.110e-4789.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9Y8P1_9STRA3.960e-2760.92Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812XI25_SYMMI1.440e-2683.93Dpy30 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S2GF22_9STRA6.710e-2672.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482SE97_9ARCH1.670e-2576.27Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A0P1B2Z2_PLAHL3.130e-2569.70Dpy-30 like protein n=1 Tax=Plasmopara halstedii T... [more]
A0A836CC20_9STRA5.920e-2572.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
G4ZVC7_PHYSP3.190e-2475.38Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A662XX81_9STRA4.370e-2470.83Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662X0K8_9STRA5.030e-2470.42Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12866contigM-pyrifera_M_contig12866:3381..4316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog2880.D7FRE3
Preferred nameDPY30
KEGG koko:K14965,ko:K14968
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0002682,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005794,GO:0005802,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006479,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007275,GO:0007548,GO:0007549,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0030154,GO:0030317,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0031984,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0034401,GO:0034708,GO:0034968,GO:0035097,GO:0036211,GO:0040008,GO:0040011,GO:0040014,GO:0040029,GO:0042054,GO:0042464,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044666,GO:0045138,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045892,GO:0045934,GO:0046661,GO:0046907,GO:0046983,GO:0048188,GO:0048189,GO:0048519,GO:0048523,GO:0048638,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051568,GO:0051641,GO:0051649,GO:0051674,GO:0060255,GO:0060290,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090598,GO:0097549,GO:0097722,GO:0098791,GO:0140096,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903706,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.chromatin silencing at telomere
EggNOG OGsKOG4109@1,KOG4109@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size357
Cds size102
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12866.5755.1prot_M-pyrifera_M_contig12866.5755.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12866 3567..4247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.4699273-UTR-M-pyrifera_M_contig12866:3380..35661622815799.4699273-UTR-M-pyrifera_M_contig12866:3380..3566Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12866 3381..3566 +
1692277574.8459346-UTR-M-pyrifera_M_contig12866:3380..35661692277574.8459346-UTR-M-pyrifera_M_contig12866:3380..3566Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12866 3381..3566 +
1622815799.5180995-UTR-M-pyrifera_M_contig12866:4247..43161622815799.5180995-UTR-M-pyrifera_M_contig12866:4247..4316Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12866 4248..4316 +
1692277574.8825462-UTR-M-pyrifera_M_contig12866:4247..43161692277574.8825462-UTR-M-pyrifera_M_contig12866:4247..4316Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12866 4248..4316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.4823-CDS-M-pyrifera_M_contig12866:3566..35891622815799.4823-CDS-M-pyrifera_M_contig12866:3566..3589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12866 3567..3589 +
1692277574.8577764-CDS-M-pyrifera_M_contig12866:3566..35891692277574.8577764-CDS-M-pyrifera_M_contig12866:3566..3589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12866 3567..3589 +
1622815799.4972858-CDS-M-pyrifera_M_contig12866:4168..42471622815799.4972858-CDS-M-pyrifera_M_contig12866:4168..4247Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12866 4169..4247 +
1692277574.8732333-CDS-M-pyrifera_M_contig12866:4168..42471692277574.8732333-CDS-M-pyrifera_M_contig12866:4168..4247Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12866 4169..4247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12866.5755.1

>prot_M-pyrifera_M_contig12866.5755.1 ID=prot_M-pyrifera_M_contig12866.5755.1|Name=mRNA_M-pyrifera_M_contig12866.5755.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=34bp
MSALVKERPPNPVEWLGNYLLRHNPQSAAPGGN*
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mRNA from alignment at M-pyrifera_M_contig12866:3381..4316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12866.5755.1 ID=mRNA_M-pyrifera_M_contig12866.5755.1|Name=mRNA_M-pyrifera_M_contig12866.5755.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig12866:3381..4316+ (Macrocystis pyrifera P11B4 male)
TCAGCGCCGGCCTCAGAGGCCAACTTGAACCTGGTTCCTCAGCAGGGCCC
CCCGTCCGTAACTGTGGCAGAGGTGGAGTCGGCGGAGCAGAAGGCGGCGG
AGAGCCTGCAGGACCGCCTCAACGTGCAGTCGCTGCCCATCCGCGCGTAC
CTCGACCAGACGGTGGTGCCCATCCTTTTGGACGGCATGTCGGCTCTCGT
CAAGGAGCGGTGAGGGCGCTTCGCTGGGGTGGGAGGGGAGGGGAGGAGAG
GGGGGGGGTGGGGAAGGATGATGGGAAAGGGGCGAGGAGGGGGGAGAGGG
GAGGAGGGGGGCGGGAAAAGGGGTGGGGTTGGGGTGGGGGGGAGGACAGG
GAAAGGTTGGGGTTGGGGAGTTGGAGGCGGGAGAAGGGGGGGTTGGGAGG
GGGGGAAGGGGGGGTTGTGGAGGGAGAAGTTGAAGGAGGGGAGAGGGCTG
GGGGGCAAGGAGGGGGCGTTCTCGAGTGAAAATAATTCTTCACCACCACA
GTATTGTAGAGGTTTGAGCTCGTTCCCGACTCGTGCTCTGCTCGTTTTTC
TTGCAAATACGTTTGTTTTTTCAATTCCATATTTTATGGAAACATGCACT
TCACACGCACGTCAAGTGCCCATATTATATACCTCTTGTTTCCCTGTTTG
CCCAAAATTGAGGCAAAACTTGATCAGAAAAGTAAAAAAGTTGCCATTTT
TCATGTTTCAATGACACTTGGTGAGCTCCTGCCTACTCCTCCCCCCACCC
ACCCCCCCCCACGCTTCCCTTGCGCCTCATTTTTTCAGCCCGCCCAACCC
GGTCGAATGGTTGGGAAACTACCTCCTGCGGCACAACCCGCAAAGTGCGG
CTCCAGGAGGAAACTGAAGGGCCGTTCGCGTCTTTGTAATTTTTAGGCGG
GCATTCAATTCTGTTTGACGAGGCGGAGGACGGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12866:3381..4316+

>mRNA_M-pyrifera_M_contig12866.5755.1 ID=mRNA_M-pyrifera_M_contig12866.5755.1|Name=mRNA_M-pyrifera_M_contig12866.5755.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig12866:3381..4316+ (Macrocystis pyrifera P11B4 male)
ATGTCGGCTCTCGTCAAGGAGCGATGTCGGCTCTCGTCAAGGAGCGCCCG
CCCAACCCGGTCGAATGGTTGGGAAACTACCTCCTGCGGCACAACCCGCA
AAGTGCGGCTCCAGGAGGAAACTGACCCGCCCAACCCGGTCGAATGGTTG
GGAAACTACCTCCTGCGGCACAACCCGCAAAGTGCGGCTCCAGGAGGAAA
CTGA
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