mRNA_M-pyrifera_M_contig128649.5754.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128649.5754.1
Unique NamemRNA_M-pyrifera_M_contig128649.5754.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128649.5754.1 vs. uniprot
Match: A0A1D8RAC2_9EUKA (Silicon transporter-like 1 (Fragment) n=1 Tax=Phaeodaria sp. OSH121 TaxID=1909273 RepID=A0A1D8RAC2_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 3.970e-22
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   19 SVTRFLAVRQVLVLLTVYITAQLTTYPTLTHYPFSPTPIPTWLRTIVLDTGLPGALTVVALGQLVPQLIATTHPWTFLNLPGARLVVYAALVVEALGFTHFAWLSSSFLKSISNL 363
            +V RFL  RQ  V+  V++ AQLTTY TL+  P+    +P  L  ++++TGLPGAL V+A GQL+PQL+A THP TF+NLPG   V+   L  EA+G THF+W+ S  +K + N+
Sbjct:   97 NVQRFLVGRQFFVVFVVFLCAQLTTYATLS-IPW----MPKTLFIVLIETGLPGALIVLAFGQLMPQLVAATHPITFMNLPGTWSVIQLCLCFEAVGVTHFSWVLSWTVKKMFNM 206          
BLAST of mRNA_M-pyrifera_M_contig128649.5754.1 vs. uniprot
Match: A0A1D8RAD0_9EUKA (Silicon transporter-like 2 (Fragment) n=1 Tax=Phaeodaria sp. OSH121 TaxID=1909273 RepID=A0A1D8RAD0_9EUKA)

HSP 1 Score: 98.6 bits (244), Expect = 5.220e-22
Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   16 NSVTRFLAVRQVLVLLTVYITAQLTTYPTLTHYPFSPTPIPTWLRTIVLDTGLPGALTVVALGQLVPQLIATTHPWTFLNLPGARLVVYAALVVEALGFTHFAWLSSSFLK 348
            ++V RFL  RQ  V+  V++ AQLTTY TL+  P+    +P  L  ++++TGLPGAL V+A GQL+PQL+A THP TF+NLPG   V+   L  EA+G THF+W+ S+ +K
Sbjct:   88 HNVQRFLVGRQFFVVFVVFLCAQLTTYATLS-IPW----MPQTLFIVLIETGLPGALIVLAFGQLMPQLVAATHPITFMNLPGTWSVIQLCLCFEAVGVTHFSWVLSATVK 193          
BLAST of mRNA_M-pyrifera_M_contig128649.5754.1 vs. uniprot
Match: UPI00049136BD (hypothetical protein n=1 Tax=Synechococcus sp. CC9616 TaxID=110663 RepID=UPI00049136BD)

HSP 1 Score: 80.5 bits (197), Expect = 4.520e-16
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   28 RFLAVRQVLVLLTVYITAQLTTYPTLTHYPFSPTPI---PTWLRTIVLDTGLPGALTVVALGQLVPQLIATTHPWTFLNLPGARLVVYAALVVEALGFTHFA-WLSSSFLKSISNLPPPQI 378
            ++LA RQ  V+LTV++ AQ+T++P +   PF+  P+   P W+  I    G  GAL V+   QL+PQ  A  HP  FLN PG  LVV   L++E++G T  A W+    LK++ +  P Q+
Sbjct:  100 QYLAGRQFFVILTVFVIAQITSFPGMEFLPFTSYPVMQLPDWINLICFKFGFLGALLVLWTAQLIPQYFANRHPDMFLNFPGNFLVVRLCLLIESIGPTKPANWMCDVLLKAVEDDRPKQL 220          
BLAST of mRNA_M-pyrifera_M_contig128649.5754.1 vs. uniprot
Match: A0A076GYY8_9SYNE (Uncharacterized protein n=2 Tax=Synechococcus sp. KORDI-100 TaxID=1280380 RepID=A0A076GYY8_9SYNE)

HSP 1 Score: 78.2 bits (191), Expect = 1.470e-15
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   28 RFLAVRQVLVLLTVYITAQLTTYPTLTHYPFSPTPI---PTWLRTIVLDTGLPGALTVVALGQLVPQLIATTHPWTFLNLPGARLVVYAALVVEALGFTHFA-WLSSSFLKSISNLPP 369
            ++LA RQ  V+LTV++ AQ+T++P +   PF+  P+   P W+  I    G  GAL V+   QL+PQ  A  HP  FLN PG  LVV   L++E++G T  A W+    LK++ +  P
Sbjct:   61 QYLAGRQFFVILTVFVIAQMTSFPRMEALPFTNYPVSQLPDWINLICFQFGFLGALPVLWTAQLIPQYFANRHPDMFLNFPGNFLVVRLCLLIESIGPTKPANWMCDVLLKAVEDDNP 178          
BLAST of mRNA_M-pyrifera_M_contig128649.5754.1 vs. uniprot
Match: A0A2E0AGF8_9CYAN (Uncharacterized protein n=1 Tax=Cyanobium sp. NAT70 TaxID=2024872 RepID=A0A2E0AGF8_9CYAN)

HSP 1 Score: 74.3 bits (181), Expect = 1.050e-13
Identity = 43/113 (38.05%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   28 RFLAVRQVLVLLTVYITAQLTTYPTLTHYPFSPTPI---PTWLRTIVLDTGLPGALTVVALGQLVPQLIATTHPWTFLNLPGARLVVYAALVVEALGFTHFA-WLSSSFLKSI 354
            ++LA RQ  V++TV++ AQ+T++P L++ PFS  P+   P W+  I    G  GAL V+   QL+PQ  A  +P  FL+ PG   +V   L++E++G T  A W+S   L ++
Sbjct:  107 QYLAGRQFFVIVTVFVIAQITSFPQLSYLPFSNVPVSDLPDWINLICFKLGFLGALIVLWTAQLIPQYFANRYPDLFLSFPGNSQIVRLCLLIESIGPTKPANWMSFVILNAV 219          
BLAST of mRNA_M-pyrifera_M_contig128649.5754.1 vs. uniprot
Match: A0A349X545_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A349X545_9GAMM)

HSP 1 Score: 75.9 bits (185), Expect = 1.550e-13
Identity = 42/116 (36.21%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    7 RVENSVTRFLAVRQVLVLLTVYITAQLTTYPTLTHYPFSPTPIPT----WLRTIVLDTGLPGALTVVALGQLVPQLIATTHPWTFLNLPGARLVVYAALVVEALGFTH-FAWLSSS 339
            + +    ++LA RQ+LV++ V+  AQL ++P + H+P +  P+P     W+  ++   G+ GA+ V+  GQL+PQ +A ++P  FLN PG  LV+ AA   E LG T    WL+ +
Sbjct:  184 KTDAGTKKYLAGRQLLVIVIVFCIAQLLSFPEIQHWPLTEQPLPNFFYPWIHLVLFKLGILGAVFVLWFGQLIPQFLAASNPQRFLNWPGMGLVLKAAWFAETLGLTQPVDWLTKN 299          
BLAST of mRNA_M-pyrifera_M_contig128649.5754.1 vs. uniprot
Match: A0A140AY29_9EUKA (SIT1 n=1 Tax=Prymnesium neolepis TaxID=284051 RepID=A0A140AY29_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 3.310e-7
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  139 TWLRTIVLDTGLPGALTVVALGQLVPQLIATTHPWTFLNLPGARLVVYAALVVEALGFTHFAW 327
            T + T  L+TGL GA+ +  +  L  Q+IA+  P  F   PG  +V+YA L+ E +G THFAW
Sbjct:  397 TGISTAFLETGLSGAVVLTIMASLSGQVIASAFPLGFCGFPGMWIVLYACLLTEFIGLTHFAW 459          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128649.5754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A1D8RAC2_9EUKA3.970e-2248.70Silicon transporter-like 1 (Fragment) n=1 Tax=Phae... [more]
A0A1D8RAD0_9EUKA5.220e-2249.55Silicon transporter-like 2 (Fragment) n=1 Tax=Phae... [more]
UPI00049136BD4.520e-1639.67hypothetical protein n=1 Tax=Synechococcus sp. CC9... [more]
A0A076GYY8_9SYNE1.470e-1539.83Uncharacterized protein n=2 Tax=Synechococcus sp. ... [more]
A0A2E0AGF8_9CYAN1.050e-1338.05Uncharacterized protein n=1 Tax=Cyanobium sp. NAT7... [more]
A0A349X545_9GAMM1.550e-1336.21Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A140AY29_9EUKA3.310e-742.86SIT1 n=1 Tax=Prymnesium neolepis TaxID=284051 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128649contigM-pyrifera_M_contig128649:8..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.4
Seed ortholog evalue5.3e-12
Seed eggNOG ortholog1280380.KR100_02925
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Silicon transporter
EggNOG OGs1GPQG@1117,1H3P3@1129,2ECN1@1,30VD1@2
COG Functional cat.S
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.43392-CDS-M-pyrifera_M_contig128649:7..3851622815799.43392-CDS-M-pyrifera_M_contig128649:7..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128649 8..385 +
1692277574.8346617-CDS-M-pyrifera_M_contig128649:7..3851692277574.8346617-CDS-M-pyrifera_M_contig128649:7..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128649 8..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128649.5754.1prot_M-pyrifera_M_contig128649.5754.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128649 8..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128649.5754.1

>prot_M-pyrifera_M_contig128649.5754.1 ID=prot_M-pyrifera_M_contig128649.5754.1|Name=mRNA_M-pyrifera_M_contig128649.5754.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MKRVENSVTRFLAVRQVLVLLTVYITAQLTTYPTLTHYPFSPTPIPTWLR
TIVLDTGLPGALTVVALGQLVPQLIATTHPWTFLNLPGARLVVYAALVVE
ALGFTHFAWLSSSFLKSISNLPPPQI
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mRNA from alignment at M-pyrifera_M_contig128649:8..385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128649.5754.1 ID=mRNA_M-pyrifera_M_contig128649.5754.1|Name=mRNA_M-pyrifera_M_contig128649.5754.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig128649:8..385+ (Macrocystis pyrifera P11B4 male)
ATGAAACGGGTAGAAAATTCGGTTACTCGGTTTTTAGCCGTTAGGCAAGT GTTGGTCTTGCTTACAGTATACATCACTGCTCAACTCACAACATACCCAA CCCTCACCCACTATCCATTTTCTCCAACCCCAATCCCTACTTGGCTACGA ACGATCGTTTTAGATACGGGTCTTCCTGGGGCTTTGACGGTGGTAGCACT TGGTCAATTGGTTCCTCAACTCATAGCAACCACTCATCCATGGACATTTC TGAACCTACCTGGTGCTCGTTTGGTTGTATACGCCGCATTGGTGGTTGAA GCTCTTGGATTTACCCACTTTGCCTGGTTGTCCTCTTCCTTCCTCAAATC CATCTCCAACTTGCCCCCTCCCCAAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128649:8..385+

>mRNA_M-pyrifera_M_contig128649.5754.1 ID=mRNA_M-pyrifera_M_contig128649.5754.1|Name=mRNA_M-pyrifera_M_contig128649.5754.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig128649:8..385+ (Macrocystis pyrifera P11B4 male)
ATGAAACGGGTAGAAAATTCGGTTACTCGGTTTTTAGCCGTTAGGCAAGT
GTTGGTCTTGCTTACAGTATACATCACTGCTCAACTCACAACATACCCAA
CCCTCACCCACTATCCATTTTCTCCAACCCCAATCCCTACTTGGCTACGA
ACGATCGTTTTAGATACGGGTCTTCCTGGGGCTTTGACGGTGGTAGCACT
TGGTCAATTGGTTCCTCAACTCATAGCAACCACTCATCCATGGACATTTC
TGAACCTACCTGGTGCTCGTTTGGTTGTATACGCCGCATTGGTGGTTGAA
GCTCTTGGATTTACCCACTTTGCCTGGTTGTCCTCTTCCTTCCTCAAATC
CATCTCCAACTTGCCCCCTCCCCAAATCATGAAACGGGTAGAAAATTCGG
TTACTCGGTTTTTAGCCGTTAGGCAAGTGTTGGTCTTGCTTACAGTATAC
ATCACTGCTCAACTCACAACATACCCAACCCTCACCCACTATCCATTTTC
TCCAACCCCAATCCCTACTTGGCTACGAACGATCGTTTTAGATACGGGTC
TTCCTGGGGCTTTGACGGTGGTAGCACTTGGTCAATTGGTTCCTCAACTC
ATAGCAACCACTCATCCATGGACATTTCTGAACCTACCTGGTGCTCGTTT
GGTTGTATACGCCGCATTGGTGGTTGAAGCTCTTGGATTTACCCACTTTG
CCTGGTTGTCCTCTTCCTTCCTCAAATCCATCTCCAACTTGCCCCCTCCC
CAAATC
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