mRNA_M-pyrifera_M_contig128643.5752.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: A0A6I3ACY5_9ACTN (Helix-turn-helix domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3ACY5_9ACTN) HSP 1 Score: 247 bits (630), Expect = 2.990e-81 Identity = 133/165 (80.61%), Postives = 147/165 (89.09%), Query Frame = 1
Query: 1 SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSFGLEPTTESVIDLTERPGRREGESITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDGAGPRLHDLGLS 495
S++VG+RLR+IRRQKRLSLQEVEA S QEFKASVLGAYERGERAISVPRLQRLARFY+VPVDQLLP D GP FG+E T +VIDLTERP R G ++TIDLTRLE L GPEA+ML+RYLTMIQV+RQDFNGRVLTIR +D QALAAILGTG+DGAG RL DLGLS
Sbjct: 17 SRKVGERLRSIRRQKRLSLQEVEAKSRQEFKASVLGAYERGERAISVPRLQRLARFYSVPVDQLLPMDEGPDFGVE-TNAAVIDLTERPSRPAGVAVTIDLTRLEQLRGPEADMLSRYLTMIQVKRQDFNGRVLTIRRDDHQALAAILGTGVDGAGNRLDDLGLS 180
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: A0A3M2G078_ACTSX (Transcriptional regulator (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G078_ACTSX) HSP 1 Score: 242 bits (618), Expect = 8.380e-80 Identity = 131/154 (85.06%), Postives = 139/154 (90.26%), Query Frame = 1
Query: 1 SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSFGLEPTTESVIDLTERPGRREGESITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDG 462
SKRVG+RLRAIRRQKRLSLQEVEAAS QEFKASVLGAYERGERAISVPRLQRLARFY+VPVDQLLP D GPSFG+ IDLTERP RR G+ ITIDLT+LE LSGPEA+MLNRYLTMIQVQRQDFNGRVLTIR+ DLQALAAILGTGI+G
Sbjct: 9 SKRVGERLRAIRRQKRLSLQEVEAASNQEFKASVLGAYERGERAISVPRLQRLARFYSVPVDQLLPPDSGPSFGV--ADAETIDLTERPARRPGDPITIDLTKLEQLSGPEADMLNRYLTMIQVQRQDFNGRVLTIRSTDLQALAAILGTGIEG 160
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: A0A7Y1U4D3_9ACTN (Transcriptional regulator n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y1U4D3_9ACTN) HSP 1 Score: 235 bits (599), Expect = 1.320e-76 Identity = 128/165 (77.58%), Postives = 143/165 (86.67%), Query Frame = 1
Query: 1 SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSFGLEPTTESVIDLTERPGRREGESITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDGAGPRLHDLGLS 495
S++VG+RLRAIRRQKRLSLQEVEA S QEFKASVLGAYERGERAISVPRL++LARFY+VPVDQLLP + P FG+E + IDL ERP R S+TIDLT+LE LSGPEA+ML+RYLTMIQVQRQDFNGRVLTIR +DLQALAAILGTGI+GA PRL LGLS
Sbjct: 13 SRKVGERLRAIRRQKRLSLQEVEANSAQEFKASVLGAYERGERAISVPRLRKLARFYSVPVDQLLPLEGAPDFGVE--VDETIDLRERPTRAATGSLTIDLTKLEKLSGPEADMLSRYLTMIQVQRQDFNGRVLTIRRDDLQALAAILGTGIEGAAPRLDALGLS 175
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: A0A2D6UC77_9ACTN (Transcriptional regulator n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UC77_9ACTN) HSP 1 Score: 231 bits (589), Expect = 3.370e-75 Identity = 123/165 (74.55%), Postives = 136/165 (82.42%), Query Frame = 1
Query: 1 SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSFGLEPTTESVIDLTERPGRREGESITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDGAGPRLHDLGLS 495
SKRVG+R+R+IRRQKRLSLQEVEA+S QEFKASVLGAYERGERAISVPRLQRL+RFYNVP DQLLPAD GPSFG+ E L +R GR + ITIDLT+L +LSGPEAEML +YLTMIQVQRQDFNGRVLT+R D ALAAILG G+DG RL LGLS
Sbjct: 6 SKRVGERIRSIRRQKRLSLQEVEASSNQEFKASVLGAYERGERAISVPRLQRLSRFYNVPADQLLPADAGPSFGVNSGDEGAAGLDDRSGRPAADPITIDLTQLASLSGPEAEMLTQYLTMIQVQRQDFNGRVLTVREQDRLALAAILGAGLDGVAARLESLGLS 170
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: A0A7Y2GJP7_9ACTN (Transcriptional regulator (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GJP7_9ACTN) HSP 1 Score: 226 bits (577), Expect = 1.920e-73 Identity = 124/160 (77.50%), Postives = 139/160 (86.88%), Query Frame = 1
Query: 1 SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSFGLEPTTESVIDLTERPGRREGESITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDGAGPRLH 480
S++VGDRLRAIRRQKRLSLQEVEA S QEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLP + P FG++ E IDL++R R+ S+TIDLTRL+ LSGPEA+MLNRYL M+QVQRQDFNGRVLTIR +DLQALAAILGTG++GA PRL
Sbjct: 12 SQKVGDRLRAIRRQKRLSLQEVEATSEQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPQEDIPDFGVD--AEPSIDLSDR-SERQPISVTIDLTRLDELSGPEADMLNRYLQMVQVQRQDFNGRVLTIRRDDLQALAAILGTGVEGAAPRLE 168
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: A0A2E8LAX2_9ACTN (Transcriptional regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LAX2_9ACTN) HSP 1 Score: 225 bits (574), Expect = 7.630e-73 Identity = 122/165 (73.94%), Postives = 134/165 (81.21%), Query Frame = 1
Query: 1 SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSFGLEPTTESVIDLTERPGRREGESITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDGAGPRLHDLGLS 495
SKRVG+R+R IRRQKRLSLQEVEAAS+QEFKASVLGAYERGERAISVPRLQRL+RFYNVP DQLLPAD GPSFG+ + L + GR ITIDLT+L +LSGPEAEML +YLTMIQVQRQDFNGRVLT+R D ALAAILGT +DG RL LGLS
Sbjct: 11 SKRVGERIREIRRQKRLSLQEVEAASSQEFKASVLGAYERGERAISVPRLQRLSRFYNVPADQLLPADAGPSFGVNTGDDGPGGLKDHSGRPTASPITIDLTQLSSLSGPEAEMLTQYLTMIQVQRQDFNGRVLTVREQDRLALAAILGTSLDGVATRLEALGLS 175
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: A0A6G0AA67_9ACTN (Transcriptional regulator n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0AA67_9ACTN) HSP 1 Score: 220 bits (560), Expect = 1.060e-70 Identity = 126/166 (75.90%), Postives = 139/166 (83.73%), Query Frame = 1
Query: 4 KRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSFGLEPTTESVIDLTERPGRREGE-SITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDGAGPRLHDLGLSV 498
KRVG+RLRAIRRQKRLSLQEVEA S QEFKASVLGAYERGERAISVPRLQRLAR YNVPVDQLLP + GP G ES IDLT+ GR E +I IDLTRLE LSGPEA+ML+RYLTMIQVQRQDFNGR+LTIR +DL+A+A ILG G+D AG RL DLGL++
Sbjct: 18 KRVGERLRAIRRQKRLSLQEVEAISEQEFKASVLGAYERGERAISVPRLQRLARLYNVPVDQLLPPEDGPVGG-----ES-IDLTDGGGRTEATVAIKIDLTRLENLSGPEADMLSRYLTMIQVQRQDFNGRMLTIRRDDLRAIACILGVGVDSAGSRLDDLGLAL 177
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: A0A538DUH6_9ACTN (Transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DUH6_9ACTN) HSP 1 Score: 220 bits (560), Expect = 1.140e-70 Identity = 118/165 (71.52%), Postives = 139/165 (84.24%), Query Frame = 1
Query: 1 SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSFGLEPTTESVIDLTERPGRREGESITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDGAGPRLHDLGLS 495
+++VG+RLRAIRRQKRLSLQEVE+ S QEFKASVLGAYERGERAISVPRL+RL+RFY VPVDQLLP D GP FG+E +IDLTER R+ G + +DLTRL+ L+GPEAEML RY+TMIQV+RQDFNGR+LTIR +D QA+AAILGTG D A RL +LG+S
Sbjct: 17 TRKVGERLRAIRRQKRLSLQEVESKSNQEFKASVLGAYERGERAISVPRLKRLSRFYAVPVDQLLPPDDGPDFGVE---APIIDLTERSPRKPGMPVVLDLTRLDRLAGPEAEMLRRYITMIQVRRQDFNGRMLTIRRDDHQAIAAILGTGPDAAPNRLDELGVS 178
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: UPI001AA03BF8 (transcriptional regulator n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA03BF8) HSP 1 Score: 216 bits (550), Expect = 2.720e-69 Identity = 124/167 (74.25%), Postives = 135/167 (80.84%), Query Frame = 1
Query: 1 SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSF-GLEPTTESVIDLTERPGRREGESITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDGAGPRLHDLGLSV 498
S++VG+RLRAIRRQKRLSLQEVEAAS QEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLP D GP F G E + I E ++TIDL RLE LSGPEAEMLNRYLTMIQVQRQDFNGR+LTIR DL+A+A ILG G+D A RL DLGLS+
Sbjct: 13 SRKVGERLRAIRRQKRLSLQEVEAASEQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPPDEGPGFAGAE---RAPIGAAEA-------AVTIDLRRLENLSGPEAEMLNRYLTMIQVQRQDFNGRMLTIRREDLRAIACILGVGVDHATGRLDDLGLSL 169
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Match: UPI001E3E09A3 (transcriptional regulator n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E3E09A3) HSP 1 Score: 211 bits (536), Expect = 3.910e-67 Identity = 120/164 (73.17%), Postives = 132/164 (80.49%), Query Frame = 1
Query: 1 SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPADIGPSFGLEPTTESVIDLTERPGRREGESITIDLTRLETLSGPEAEMLNRYLTMIQVQRQDFNGRVLTIRANDLQALAAILGTGIDGAGPRLHDLGL 492
S++VGDRLRAIRRQKRLSLQ+VEAAS EFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLP D GP+F + +ID ER S TIDL RLE L+GPEA+MLNRYL+MIQVQRQDFNGRVLTIR +DL+A+A ILG G A RL DLGL
Sbjct: 14 SRKVGDRLRAIRRQKRLSLQDVEAASDLEFKASVLGAYERGERAISVPRLQRLARFYNVPVDQLLPNDDGPAFAEDGPAMGIID--ER-------SFTIDLRRLEDLTGPEADMLNRYLSMIQVQRQDFNGRVLTIRKDDLRAIACILGVGPSSATERLGDLGL 168 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128643.5752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig128643.5752.1 >prot_M-pyrifera_M_contig128643.5752.1 ID=prot_M-pyrifera_M_contig128643.5752.1|Name=mRNA_M-pyrifera_M_contig128643.5752.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp SKRVGDRLRAIRRQKRLSLQEVEAASTQEFKASVLGAYERGERAISVPRLback to top mRNA from alignment at M-pyrifera_M_contig128643:2..499- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig128643.5752.1 ID=mRNA_M-pyrifera_M_contig128643.5752.1|Name=mRNA_M-pyrifera_M_contig128643.5752.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig128643:2..499- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig128643:2..499- >mRNA_M-pyrifera_M_contig128643.5752.1 ID=mRNA_M-pyrifera_M_contig128643.5752.1|Name=mRNA_M-pyrifera_M_contig128643.5752.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig128643:2..499- (Macrocystis pyrifera P11B4 male)back to top |