mRNA_M-pyrifera_M_contig128635.5749.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128635.5749.1
Unique NamemRNA_M-pyrifera_M_contig128635.5749.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A354B5C9_9ACTN (Chromosome segregation protein SMC (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B5C9_9ACTN)

HSP 1 Score: 166 bits (421), Expect = 1.560e-45
Identity = 97/165 (58.79%), Postives = 112/165 (67.88%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            VIAN+EAE AR R DL  V                       DRA FQ +WGDGVPVPTGQA+EVRGELGA +A+ ERG  E DRLQ++L EL ++R  L+ DAA RR +LG LHDEEEPLVAA EAAE+AR  A++   T  A Q DA+ADHHRWVARAEALTL
Sbjct:  324 VIANMEAEAARCRADLVAVTNELDELGPDVERLAEEEATLARDRAAFQAEWGDGVPVPTGQASEVRGELGARRAAIERGKSESDRLQAKLTELEKKRQDLEADAARRRADLGALHDEEEPLVAAHEAAESARHVAEEQAATRQAEQIDAEADHHRWVARAEALTL 488          
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A7X5WTS4_9ACTN (AAA family ATPase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WTS4_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 2.110e-43
Identity = 92/165 (55.76%), Postives = 113/165 (68.48%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            VIANLEAE AR RDDL +V                       DRA F+E+WGDGVPVP+ +AAEVRGELGAL+A+ ERG GE  R+++ L EL ER   L+ +A+ RR EL  LH+EEEPLV A+EAAEA+R  ADD +   +A+ ADA+A+HHRW ARAEALTL
Sbjct:  324 VIANLEAEAARLRDDLARVDAGITGLVPDTERLEDAERHLAADRAAFREEWGDGVPVPSSRAAEVRGELGALRAAIERGHGEAGRVRAGLEELSERSRALEAEASARRAELAALHEEEEPLVLALEAAEASRREADDRLADRIASHADAEAEHHRWAARAEALTL 488          
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A2D6U7B7_9ACTN (Chromosome partition protein Smc n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U7B7_9ACTN)

HSP 1 Score: 147 bits (370), Expect = 8.640e-38
Identity = 89/165 (53.94%), Postives = 102/165 (61.82%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            VIAN+EAE AR R DLE V                X      DRA FQ +WGDGVP+PTGQA+EVRGELGA +A+ ERG  E DRLQ++L EL ++R  L+ DAA RR +LG LHDEEEPLVAA                     Q DA+ADHHRWVARAEALTL
Sbjct:  324 VIANMEAEAARCRADLEAVTNELDELGPDVERLAEXEATLARDRAAFQAEWGDGVPLPTGQASEVRGELGARRAAIERGKSESDRLQAKLTELEQKRQDLEADAARRRADLGALHDEEEPLVAAHXXXXXXXXXXXXXXXXXXXEQIDAEADHHRWVARAEALTL 488          
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A3M2GZE6_ACTSX (Chromosome partition protein Smc n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GZE6_ACTSX)

HSP 1 Score: 117 bits (293), Expect = 1.950e-27
Identity = 87/165 (52.73%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            VIANLEAE  R R +LE+V             XXXXXXXXX DRA F E WGDGVPVP+GQAAEVRG L AL A  ERG  E  R+  RL  L  RR  ++      R E+G LHD EEPLVAA+EAA      A   V     A A+A ++  RW ARAEAL L
Sbjct:  324 VIANLEAEAERLRRELEEVTAAARALAPEHERXXXXXXXXXADRAAFAERWGDGVPVPSGQAAEVRGRLAALHAGLERGRAERARVAERLDHLAARRGDIEAAVGRHRAEIGRLHDSEEPLVAALEAATDRERRAAGTVAAATDAHAEAVSELDRWTARAEALAL 488          
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A6I2XA48_9ACTN (Chromosome partition protein Smc n=2 Tax=root TaxID=1 RepID=A0A6I2XA48_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 7.430e-21
Identity = 68/165 (41.21%), Postives = 86/165 (52.12%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            V+A+LE+E AR   +L  V                       +R  F+ +W  GV  PTG AAE+RGELGAL+A+ +RG  E +R+ SR A L  +      +AA  R EL      EEPLV AME AEA   AA  AV    +    A++DHH W ARAEAL L
Sbjct:  324 VVASLESESARLAGELAAVEAEAEQFEPMTLELAAAQSALAAERLAFEAEWSAGVSAPTGAAAEMRGELGALRAAADRGREERERVASRSASLATKAEERAVEAARLRTELTEAEAAEEPLVEAMELAEARVAAATGAVEVAESDHRSAESDHHAWQARAEALAL 488          
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A6I3F9U6_9ACTN (Chromosome partition protein Smc n=2 Tax=root TaxID=1 RepID=A0A6I3F9U6_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-20
Identity = 65/165 (39.39%), Postives = 86/165 (52.12%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            V+A+LEAE AR   +L +V                       +R  F+  W  GVP PTG AAEVRGEL AL+A+ +RG  E DR+ SR+A L E+   L  +A   R +L      E PLV  ++AAE+ R  A+  V +       A++DHH W AR EAL L
Sbjct:  324 VVASLEAEAARLAAELSEVEDEASRFTPLADELLAAEGALADERQAFEAQWATGVPAPTGAAAEVRGELAALRAAADRGRSERDRVSSRVAALTEKTEQLAAEAERLRLDLVDAESAELPLVEQIDAAESRRSEAESKVGSAETVHRAAESDHHAWQARVEALAL 488          
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A6I3C7K7_9ACTN (AAA family ATPase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I3C7K7_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 2.450e-20
Identity = 63/165 (38.18%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            V+ANLEA+GAR R DL+                          R+RFQE+W  GV  P+G+A+E+RGELGAL+ S ER +GE  RL+ R+A   +    ++ +    + ELGVL    E    A+E AEA R  A+ +V    +  ++AD +H  W ARA+AL +
Sbjct:  324 VVANLEADGARLRSDLDTAELEAEALMPELDRLANAEVELDRARSRFQEEWAGGVAPPSGKASEIRGELGALRISVERSSGERTRLEQRVAAHADELGPIEAELIAVQAELGVLDAASESRRQAVEDAEAERDLAEHSVAAARSVLSEADTEHSSWNARADALAM 488          
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A6J7AUC8_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7AUC8_9ZZZZ)

HSP 1 Score: 97.1 bits (240), Expect = 2.560e-20
Identity = 63/165 (38.18%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            V+ANLEA+GAR R DL+                          R+RFQE+W  GV  P+G+A+E+RGELGAL+ S ER +GE  RL+ R+A   +    ++ +    + ELGVL    E    A+E AEA R  A+ +V    +  ++AD +H  W ARA+AL +
Sbjct:  324 VVANLEADGARLRSDLDTAELEAEALMPELDRLANAEVELDRARSRFQEEWAGGVAPPSGKASEIRGELGALRISVERSSGERTRLEQRVAAHADELGPIEAELIAVQAELGVLDAASESRRQAVEDAEAERDLAEHSVAAARSVLSEADTEHSSWNARADALAM 488          
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A5Q2RGT4_9ACTN (Chromosome partition protein Smc n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RGT4_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 2.290e-17
Identity = 62/165 (37.58%), Postives = 77/165 (46.67%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            ++ANLEAE AR  ++L  V                       DRARF  DWG+GV  P+G+AAEVRGELGAL +S ERG  E+ R+  R                  R EL      EEPLV  ++ AE  R            A + A+ D  RW ARAEAL +
Sbjct:  324 IVANLEAESARLDEELASVGQDAEALAPLMASLAEDEEALDADRARFDADWGEGVAPPSGRAAEVRGELGALVSSLERGETELARVDERXXXXXXXXXXXXXXXXXXRGELAAAEAAEEPLVGRLDGAERRRAIXXXXXXXXXDALSAAEGDRSRWQARAEALGM 488          
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Match: A0A6I3I947_9ACTN (Chromosome partition protein Smc n=15 Tax=root TaxID=1 RepID=A0A6I3I947_9ACTN)

HSP 1 Score: 84.7 bits (208), Expect = 5.010e-16
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 1
Query:    1 VIANLEAEGARSRDDLEQVXXXXXXXXXXXXXXXXXXXXXXXDRARFQEDWGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVLDRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADADADHHRWVARAEALTL 495
            V+A+LEAE AR   +L +V                       +R  F+E W  G+P PTG AAEVRGEL AL+ ++ R   E DR+ +R   L E+   L  +    R +L  L   E PLV +MEAAE+ R  A               ++ H W AR EAL L
Sbjct:  324 VVASLEAEAARLATELSEVESEAEGFAPLVAELADAEQLLAAERLAFEEQWSTGIPAPTGAAAEVRGELAALRTASGRAREERDRIATRATALAEKAAQLLTETESLRTQLIELESAELPLVESMEAAESRRSKAXXXXXXXXXXXXXXXSEQHAWRARVEALAL 488          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128635.5749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A354B5C9_9ACTN1.560e-4558.79Chromosome segregation protein SMC (Fragment) n=1 ... [more]
A0A7X5WTS4_9ACTN2.110e-4355.76AAA family ATPase (Fragment) n=1 Tax=Actinomycetia... [more]
A0A2D6U7B7_9ACTN8.640e-3853.94Chromosome partition protein Smc n=7 Tax=Acidimicr... [more]
A0A3M2GZE6_ACTSX1.950e-2752.73Chromosome partition protein Smc n=1 Tax=Actinomyc... [more]
A0A6I2XA48_9ACTN7.430e-2141.21Chromosome partition protein Smc n=2 Tax=root TaxI... [more]
A0A6I3F9U6_9ACTN1.380e-2039.39Chromosome partition protein Smc n=2 Tax=root TaxI... [more]
A0A6I3C7K7_9ACTN2.450e-2038.18AAA family ATPase (Fragment) n=1 Tax=Actinomycetia... [more]
A0A6J7AUC8_9ZZZZ2.560e-2038.18Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A5Q2RGT4_9ACTN2.290e-1737.58Chromosome partition protein Smc n=1 Tax=Actinomar... [more]
A0A6I3I947_9ACTN5.010e-1635.76Chromosome partition protein Smc n=15 Tax=root Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128635contigM-pyrifera_M_contig128635:5..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.19621-CDS-M-pyrifera_M_contig128635:4..4991622815799.19621-CDS-M-pyrifera_M_contig128635:4..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128635 5..499 +
1692277574.7546475-CDS-M-pyrifera_M_contig128635:4..4991692277574.7546475-CDS-M-pyrifera_M_contig128635:4..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128635 5..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128635.5749.1prot_M-pyrifera_M_contig128635.5749.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128635 5..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128635.5749.1

>prot_M-pyrifera_M_contig128635.5749.1 ID=prot_M-pyrifera_M_contig128635.5749.1|Name=mRNA_M-pyrifera_M_contig128635.5749.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
VIANLEAEGARSRDDLEQVEAELATLAPDLERLEAVERELAVDRARFQED
WGDGVPVPTGQAAEVRGELGALKASTERGAGEVDRLQSRLAELGERRTVL
DRDAADRRNELGVLHDEEEPLVAAMEAAEAARLAADDAVTTLVAAQADAD
ADHHRWVARAEALTL
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mRNA from alignment at M-pyrifera_M_contig128635:5..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128635.5749.1 ID=mRNA_M-pyrifera_M_contig128635.5749.1|Name=mRNA_M-pyrifera_M_contig128635.5749.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig128635:5..499+ (Macrocystis pyrifera P11B4 male)
GTCATCGCCAATCTCGAAGCCGAGGGTGCACGGTCCCGCGACGATCTCGA ACAGGTCGAAGCCGAACTCGCCACCCTCGCTCCCGATCTCGAACGTCTCG AAGCGGTCGAGCGCGAGCTCGCCGTCGATCGCGCCCGTTTCCAGGAGGAC TGGGGGGACGGCGTGCCGGTTCCCACCGGCCAGGCCGCCGAGGTGCGTGG CGAGCTGGGCGCGCTCAAGGCCTCGACCGAGCGTGGTGCCGGCGAGGTCG ACCGCCTCCAGAGCCGTCTCGCCGAGCTGGGCGAACGGCGTACGGTCCTC GATCGCGACGCCGCCGATCGCCGCAACGAGCTCGGCGTCCTTCACGACGA GGAAGAGCCGTTGGTCGCGGCGATGGAAGCCGCTGAAGCGGCCCGACTCG CAGCCGACGATGCCGTGACCACGCTGGTGGCCGCGCAAGCCGACGCCGAT GCCGACCACCATCGCTGGGTGGCGCGTGCCGAAGCGCTCACGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128635:5..499+

>mRNA_M-pyrifera_M_contig128635.5749.1 ID=mRNA_M-pyrifera_M_contig128635.5749.1|Name=mRNA_M-pyrifera_M_contig128635.5749.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig128635:5..499+ (Macrocystis pyrifera P11B4 male)
GTCATCGCCAATCTCGAAGCCGAGGGTGCACGGTCCCGCGACGATCTCGA
ACAGGTCGAAGCCGAACTCGCCACCCTCGCTCCCGATCTCGAACGTCTCG
AAGCGGTCGAGCGCGAGCTCGCCGTCGATCGCGCCCGTTTCCAGGAGGAC
TGGGGGGACGGCGTGCCGGTTCCCACCGGCCAGGCCGCCGAGGTGCGTGG
CGAGCTGGGCGCGCTCAAGGCCTCGACCGAGCGTGGTGCCGGCGAGGTCG
ACCGCCTCCAGAGCCGTCTCGCCGAGCTGGGCGAACGGCGTACGGTCCTC
GATCGCGACGCCGCCGATCGCCGCAACGAGCTCGGCGTCCTTCACGACGA
GGAAGAGCCGTTGGTCGCGGCGATGGAAGCCGCTGAAGCGGCCCGACTCG
CAGCCGACGATGCCGTGACCACGCTGGTGGCCGCGCAAGCCGACGCCGAT
GCCGACCACCATCGCTGGGTGGCGCGTGCCGAAGCGCTCACGCTGGTCAT
CGCCAATCTCGAAGCCGAGGGTGCACGGTCCCGCGACGATCTCGAACAGG
TCGAAGCCGAACTCGCCACCCTCGCTCCCGATCTCGAACGTCTCGAAGCG
GTCGAGCGCGAGCTCGCCGTCGATCGCGCCCGTTTCCAGGAGGACTGGGG
GGACGGCGTGCCGGTTCCCACCGGCCAGGCCGCCGAGGTGCGTGGCGAGC
TGGGCGCGCTCAAGGCCTCGACCGAGCGTGGTGCCGGCGAGGTCGACCGC
CTCCAGAGCCGTCTCGCCGAGCTGGGCGAACGGCGTACGGTCCTCGATCG
CGACGCCGCCGATCGCCGCAACGAGCTCGGCGTCCTTCACGACGAGGAAG
AGCCGTTGGTCGCGGCGATGGAAGCCGCTGAAGCGGCCCGACTCGCAGCC
GACGATGCCGTGACCACGCTGGTGGCCGCGCAAGCCGACGCCGATGCCGA
CCACCATCGCTGGGTGGCGCGTGCCGAAGCGCTCACGCTG
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