mRNA_M-pyrifera_M_contig128546.5733.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128546.5733.1
Unique NamemRNA_M-pyrifera_M_contig128546.5733.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A6I3WSG5_9ACTN (Histidine kinase n=2 Tax=root TaxID=1 RepID=A0A6I3WSG5_9ACTN)

HSP 1 Score: 103 bits (258), Expect = 4.990e-24
Identity = 62/103 (60.19%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:    4 FGLSAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVAETS---TDEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            F L+A+  L   A AA  L RR T PIR    AT  IA G L TR+ E S   TDE+  LARSVN+MAG+LERS   EQQFLLS++HDLRTPLTSI GYAEA+
Sbjct:  163 FLLAALATLALGAGAAILLGRRLTRPIRDASEATHRIARGELSTRLPEPSPRHTDELADLARSVNAMAGELERSHLLEQQFLLSVSHDLRTPLTSIRGYAEAI 265
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BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A7X9KGH7_9ACTN (HAMP domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KGH7_9ACTN)

HSP 1 Score: 98.2 bits (243), Expect = 7.950e-23
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   13 SAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVAETST---DEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            S   +LLA   AA  L RR T PIR    AT  IA+G+L TR+ E      DE+ +L+R+VN+MA  LERSR  EQQFLLS+THDLRTPLTSI GYAEA+
Sbjct:  169 SGATILLALG-AAYLLGRRLTRPIREASTATQHIAAGQLSTRITEPPAHHHDELAELSRNVNAMAASLERSRGLEQQFLLSVTHDLRTPLTSIRGYAEAI 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A538JS65_9ACTN (Histidine kinase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JS65_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 1.150e-22
Identity = 54/102 (52.94%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 WFGLSAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVAET-STDEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            WF L+A++ L A+   A  L  R T P+R  +RAT  IA+G L  R+ E    DE+  L RS+NSMA  LERSR  E+QFLL+++HDLRTPLTSI G+AEA+
Sbjct:  147 WFALAAIVTLGAAVAVASVLGSRLTRPLRDAQRATRRIAAGDLSARLPEPRGDDELATLTRSINSMAETLERSRGLERQFLLAVSHDLRTPLTSIRGFAEAI 248
[Close]
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A2E0SZN9_9ACTN (Histidine kinase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0SZN9_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 1.950e-22
Identity = 52/104 (50.00%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 WFGLSAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVAETST---DEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            WF L+++  ++ +A+ AG ++R  T PIR+       IA+G LD R+ + +    DEVG+L  S+NSMA +L+RS A E+QFL+S++HDLRTPLTSI GYAEAL
Sbjct:  158 WFLLASLATIVVAALVAGRVSRSLTGPIRASRDVARRIAAGDLDARIPDATAARRDEVGELVASINSMADNLQRSNALERQFLMSVSHDLRTPLTSIKGYAEAL 261
[Close]
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A7C1UG84_9ACTN (Histidine kinase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UG84_9ACTN)

HSP 1 Score: 99.4 bits (246), Expect = 2.660e-22
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 WFGLSAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVA---ETSTDEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            WF ++A++ ++  AV    L R  T P+  I R T  +A G L  RV+   E  +DE+G+LARSVN++A  LERSR  EQQFLLS++HDLRTPLTSI G+AEAL
Sbjct:  161 WFLVAALMTVVIGAVVGIRLGRTLTRPVDRIRRTTGELAGGNLQARVSSGDELRSDELGELARSVNTLADSLERSRGLEQQFLLSVSHDLRTPLTSIRGFAEAL 264
[Close]
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A539E191_9ACTN (Histidine kinase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E191_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 3.610e-22
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 WFGLSAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVAETSTD---EVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            +F  +A++  L   +AA   ARRF EPI +   ATT IA+G L TR+ E       E+ +L+R+VNSMA  L+RSR  EQQFLLSI+HDLRTPLTSI GYAEAL
Sbjct:   57 YFVFAALVTALGGLLAAMIAARRFVEPITAASVATTKIANGELATRLPEPPAHQRHELAELSRNVNSMAETLQRSRTLEQQFLLSISHDLRTPLTSIRGYAEAL 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A3C1L7M6_9ACTN (Histidine kinase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1L7M6_9ACTN)

HSP 1 Score: 98.2 bits (243), Expect = 6.260e-22
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   13 SAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVAETST---DEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            S   +LLA   AA  L RR T PIR    AT  IA+G+L TR+ E      DE+ +L+R+VN+MA  LERSR  EQQFLLS+THDLRTPLTSI GYAEA+
Sbjct:  169 SGATILLALG-AAYLLGRRLTRPIREASTATQHIAAGQLSTRITEPPAHHHDELAELSRNVNAMAASLERSRGLEQQFLLSVTHDLRTPLTSIRGYAEAI 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A538D2U1_9ACTN (Histidine kinase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D2U1_9ACTN)

HSP 1 Score: 98.2 bits (243), Expect = 7.040e-22
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 WFGLSAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVAETS---TDEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            WF +++   +    + A WL+R  T+ +R+ +  T +IASG L  RV E S    DEV  L+RS+NSMA  LER+R  E+QFL+SITHDLRTPLTSI GYAEAL
Sbjct:  172 WFLIASAGTIAMGFIVALWLSRGLTQRLRAAQATTHSIASGDLSARVPEPSGNAKDEVSDLSRSINSMAMQLERARGLERQFLMSITHDLRTPLTSIQGYAEAL 275
[Close]
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A6I3AEU2_9ACTN (Histidine kinase n=2 Tax=root TaxID=1 RepID=A0A6I3AEU2_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 9.040e-22
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    1 WFGLSAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVAET---STDEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            WF L+A   LLA A+ A  L+RR T P+     AT+ IA+G L  RV +    +TDE+ +L+RS+N+MA  LERSR  E+QFL+S++HDLRTP+ SI GYAEAL
Sbjct:  168 WFLLAAAGTLLAGALIATRLSRRLTNPLVDARDATSRIANGDLAARVDDPHPGATDEMSELSRSINAMAASLERSRGLERQFLMSVSHDLRTPMASIQGYAEAL 271
[Close]
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Match: A0A538H7B7_9ACTN (Histidine kinase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538H7B7_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 1.100e-21
Identity = 54/102 (52.94%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 WFGLSAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRV-AETSTDEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEAL 303
            WF L+ ++ L AS   A  L  R T P+R  E AT  IA+G L  RV    + DE+  LARS+N+MA +L+RSR  E+QFLLS++HDLRTPLTSI G+AEA+
Sbjct:  146 WFVLATLLALAASVAVAFSLGSRLTRPLRDAEAATRRIAAGDLSARVPVPDNDDELAALARSINAMATELDRSRGLERQFLLSVSHDLRTPLTSIRGFAEAI 247
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128546.5733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3WSG5_9ACTN4.990e-2460.19Histidine kinase n=2 Tax=root TaxID=1 RepID=A0A6I3... [more]
A0A7X9KGH7_9ACTN7.950e-2358.00HAMP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A538JS65_9ACTN1.150e-2252.94Histidine kinase n=1 Tax=Actinomycetia bacterium T... [more]
A0A2E0SZN9_9ACTN1.950e-2250.00Histidine kinase (Fragment) n=1 Tax=Acidimicrobiac... [more]
A0A7C1UG84_9ACTN2.660e-2252.88Histidine kinase n=1 Tax=Acidimicrobiales bacteriu... [more]
A0A539E191_9ACTN3.610e-2255.77Histidine kinase (Fragment) n=1 Tax=Acidimicrobiac... [more]
A0A3C1L7M6_9ACTN6.260e-2258.00Histidine kinase n=2 Tax=Actinobacteria TaxID=2011... [more]
A0A538D2U1_9ACTN7.040e-2252.88Histidine kinase n=1 Tax=Actinomycetia bacterium T... [more]
A0A6I3AEU2_9ACTN9.040e-2252.88Histidine kinase n=2 Tax=root TaxID=1 RepID=A0A6I3... [more]
A0A538H7B7_9ACTN1.100e-2152.94Histidine kinase n=1 Tax=Actinomycetia bacterium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128546contigM-pyrifera_M_contig128546:194..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.3
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog871963.Desdi_1078
Preferred namebaeS
KEGG koko:K07642,ko:K10819,ko:K18143
KEGG Pathwayko01501,ko02020,map01501,map02020
KEGG ModuleM00450,M00645,M00646,M00648,M00649,M00655
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
EggNOG OGs1TQ1H@1239,247VG@186801,264FP@186807,COG3850@1,COG3850@2,COG5002@1,COG5002@2
EC2.7.13.3
COG Functional cat.T
Best tax levelPeptococcaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01504,ko02022
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.2399204-CDS-M-pyrifera_M_contig128546:193..4961622815798.2399204-CDS-M-pyrifera_M_contig128546:193..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128546 194..496 +
1692277574.4132538-CDS-M-pyrifera_M_contig128546:193..4961692277574.4132538-CDS-M-pyrifera_M_contig128546:193..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128546 194..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128546.5733.1prot_M-pyrifera_M_contig128546.5733.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128546 194..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128546.5733.1

>prot_M-pyrifera_M_contig128546.5733.1 ID=prot_M-pyrifera_M_contig128546.5733.1|Name=mRNA_M-pyrifera_M_contig128546.5733.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
WFGLSAVIVLLASAVAAGWLARRFTEPIRSIERATTAIASGRLDTRVAET
STDEVGQLARSVNSMAGDLERSRAAEQQFLLSITHDLRTPLTSISGYAEA
L
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mRNA from alignment at M-pyrifera_M_contig128546:194..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128546.5733.1 ID=mRNA_M-pyrifera_M_contig128546.5733.1|Name=mRNA_M-pyrifera_M_contig128546.5733.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig128546:194..496+ (Macrocystis pyrifera P11B4 male)
TGGTTCGGACTGTCGGCGGTGATCGTCTTGCTGGCCAGCGCAGTGGCCGC
CGGTTGGCTCGCTCGGCGGTTCACCGAACCGATCCGCTCCATCGAGCGAG
CGACGACGGCGATTGCGAGCGGCAGACTCGACACACGGGTCGCCGAGACC
AGTACCGACGAAGTCGGGCAGCTTGCCCGGTCTGTCAACTCGATGGCCGG
AGATCTCGAGCGATCTCGAGCGGCCGAGCAGCAGTTCTTGCTGTCGATCA
CCCACGACCTTCGTACGCCGCTGACATCGATCTCGGGGTATGCCGAAGCG
CTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128546:194..496+

>mRNA_M-pyrifera_M_contig128546.5733.1 ID=mRNA_M-pyrifera_M_contig128546.5733.1|Name=mRNA_M-pyrifera_M_contig128546.5733.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig128546:194..496+ (Macrocystis pyrifera P11B4 male)
TGGTTCGGACTGTCGGCGGTGATCGTCTTGCTGGCCAGCGCAGTGGCCGC
CGGTTGGCTCGCTCGGCGGTTCACCGAACCGATCCGCTCCATCGAGCGAG
CGACGACGGCGATTGCGAGCGGCAGACTCGACACACGGGTCGCCGAGACC
AGTACCGACGAAGTCGGGCAGCTTGCCCGGTCTGTCAACTCGATGGCCGG
AGATCTCGAGCGATCTCGAGCGGCCGAGCAGCAGTTCTTGCTGTCGATCA
CCCACGACCTTCGTACGCCGCTGACATCGATCTCGGGGTATGCCGAAGCG
CTGTGGTTCGGACTGTCGGCGGTGATCGTCTTGCTGGCCAGCGCAGTGGC
CGCCGGTTGGCTCGCTCGGCGGTTCACCGAACCGATCCGCTCCATCGAGC
GAGCGACGACGGCGATTGCGAGCGGCAGACTCGACACACGGGTCGCCGAG
ACCAGTACCGACGAAGTCGGGCAGCTTGCCCGGTCTGTCAACTCGATGGC
CGGAGATCTCGAGCGATCTCGAGCGGCCGAGCAGCAGTTCTTGCTGTCGA
TCACCCACGACCTTCGTACGCCGCTGACATCGATCTCGGGGTATGCCGAA
GCGCTG
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