mRNA_M-pyrifera_M_contig128544.5731.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128544.5731.1
Unique NamemRNA_M-pyrifera_M_contig128544.5731.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A7Y2D8X9_9ACTN (NADH-quinone oxidoreductase subunit A n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2D8X9_9ACTN)

HSP 1 Score: 176 bits (446), Expect = 7.370e-54
Identity = 93/140 (66.43%), Postives = 111/140 (79.29%), Query Frame = 1
Query:    1 FVASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQVNTRQHEMRSSTRTTTTTIRRVGLEGRFDEVRVPARAEEVA 420
            FVASKL+APRR   +K APYECGIIPG+E P+RFPVRF+LVAM+FI+FDIEIIF +PWA+ HR + V GLVA+++FS LVFESFVYLI+ GALDWGPL+ + R     S+ RT  TTIRRVGLEGR + V   A AEE A
Sbjct:   23 FVASKLFAPRRMNDKKAAPYECGIIPGKEKPERFPVRFFLVAMIFIVFDIEIIFFFPWAISHRAIGVFGLVAVLIFSALVFESFVYLISNGALDWGPLKKSRRLSPAVSADRTARTTIRRVGLEGRPEPVGAAAHAEEPA 162          
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A7Y2DK86_9ACTN (NADH-quinone oxidoreductase subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DK86_9ACTN)

HSP 1 Score: 170 bits (430), Expect = 2.180e-51
Identity = 89/131 (67.94%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 FVASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQVNTRQHEMRSST-----RTTTTTIRRVGLEGR 378
            FVAS+L AP R T EK APYECGIIPGREPPQRFPVRFYLVAM+F+IFDIEIIFLYP+A+ H  L   GL+A+++FS LVFESFVYLI+KGA+DWGPLQ N+      + T     RT T+T+RRVG EGR
Sbjct:   22 FVASRLLAPSRTTQEKLAPYECGIIPGREPPQRFPVRFYLVAMMFVIFDIEIIFLYPYAVTHEALGRFGLIAIVIFSALVFESFVYLISKGAIDWGPLQYNSPVRTSAAETAVDPSRTVTSTVRRVGTEGR 152          
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A7W0LTA4_9ACTN (NADH-quinone oxidoreductase subunit A n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0LTA4_9ACTN)

HSP 1 Score: 169 bits (427), Expect = 3.330e-51
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 1
Query:    1 FVASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQVNTRQHEMRSSTRTTTTTIRRVGLEGR 378
            F AS+L APRRPT  K APYECGI+P +EPP+RFPVRFYL+AM+FI+FDIEIIFLYP+A++HREL   GLV M+VF++ VF SFV+LIA GALDWGP +   R     S+TRT  TT+RRVGLEGR
Sbjct:   22 FFASRLLAPRRPTAAKSAPYECGIVPSQEPPERFPVRFYLIAMIFIVFDIEIIFLYPYAVIHRELGGFGLVEMVVFAVAVFASFVFLIANGALDWGPAKRGRRVDPRVSTTRTAATTVRRVGLEGR 147          
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A7Y2IIF5_9ACTN (NADH-quinone oxidoreductase subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IIF5_9ACTN)

HSP 1 Score: 165 bits (417), Expect = 2.880e-49
Identity = 88/135 (65.19%), Postives = 103/135 (76.30%), Query Frame = 1
Query:    4 VASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQVNTRQHEMRSST---------RTTTTTIRRVGLEGRF 381
            +ASKL APRR T EK APYECGIIPGREPPQRFPVRFYLVAM+F+IFDIEIIFLYP+A+ H+ L   GL+A+++FS LVFESFVYLI+KGALDWGPL  +       S T         RT+ +T+RRVG EGR 
Sbjct:   23 MASKLLAPRRATQEKIAPYECGIIPGREPPQRFPVRFYLVAMMFVIFDIEIIFLYPYAVTHQALGRFGLIAILIFSALVFESFVYLISKGALDWGPLNAHAPLSTSASETAGVGMSDPRRTSASTVRRVGAEGRL 157          
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A6N7FQD4_9ACTN (NADH-quinone oxidoreductase subunit n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FQD4_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 9.010e-49
Identity = 86/138 (62.32%), Postives = 108/138 (78.26%), Query Frame = 1
Query:    4 VASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQVNTRQHEMRSSTRTTTTTIRRVGLEGRF--DEVRVPARAE 411
            +ASKL  PRR T+ K  PYE GI+PGREPPQRF VRFYLVAM+FI+FDIEIIFLYPWAM+H EL + GL+A+ +F+  VFESF+YL++KGAL+WGP +    +HEM +  RT +TT+RRVG  GR+  DE+ V A AE
Sbjct:    1 MASKLLGPRRVTLAKLGPYESGIVPGREPPQRFSVRFYLVAMIFIVFDIEIIFLYPWAMIHDELGLFGLLAIAMFAASVFESFLYLLSKGALEWGPRR-RVARHEMVAPERTASTTVRRVGTTGRYRPDELEVLAAAE 137          
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A538DEW6_9ACTN (NADH-quinone oxidoreductase subunit A n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DEW6_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 1.650e-48
Identity = 82/126 (65.08%), Postives = 99/126 (78.57%), Query Frame = 1
Query:    1 FVASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQVNTRQHEMRSSTRTTTTTIRRVGLEGR 378
            F+AS L APR P   K APYECGIIP +E P+RFPVRF+LVAM+FI+FDIEIIF YPWA+ H+E  + GLVA++VF++ VFESFVYLI  GALDWGP++       M S+ RT+ TTIRRVGLEGR
Sbjct:   22 FIASGLLAPRSPNDRKSAPYECGIIPAKETPERFPVRFFLVAMIFIVFDIEIIFFYPWAVAHKEAGLFGLVAILVFTVAVFESFVYLIGNGALDWGPVKQLRSMRSMVSAERTSATTIRRVGLEGR 147          
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A6I3A6H2_9ACTN (NADH-quinone oxidoreductase subunit A n=2 Tax=root TaxID=1 RepID=A0A6I3A6H2_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 2.400e-48
Identity = 84/132 (63.64%), Postives = 103/132 (78.03%), Query Frame = 1
Query:    1 FVASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQ------VNTRQHEMRSSTRTTTTTIRRVGLEGR 378
            FVAS L APR P   K APYECGIIP +E P+RFPVRF+L+AM+FI+FDIEIIF YPWA+ H+E+   GLVA+++FS  VFESFVYLIA GAL+WGP++         R  +MRS+ RT+T+TIRRVGLEGR
Sbjct:   28 FVASGLLAPRSPNDRKRAPYECGIIPAKETPERFPVRFFLIAMIFIVFDIEIIFFYPWAIAHKEVGWFGLVAVLIFSFAVFESFVYLIANGALEWGPVKRLRDVSATMRLTDMRSAERTSTSTIRRVGLEGR 159          
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A351KBC6_9ACTN (NADH-quinone oxidoreductase subunit A n=3 Tax=Acidimicrobiia TaxID=84992 RepID=A0A351KBC6_9ACTN)

HSP 1 Score: 161 bits (408), Expect = 2.830e-48
Identity = 87/133 (65.41%), Postives = 103/133 (77.44%), Query Frame = 1
Query:    1 FVASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQVNTRQHEMRSSTRTTTTTIRRVG-----LEGRFD 384
            FVAS+L APR P   K APYECGIIPGRE P+RFPVRF+LVAM+FI+FDIEIIF YPWA+ HR L + GLVA+++FS  VFESFVYLI  GAL+WGP++   R     S+TRTT++TIRRVG     LEGR D
Sbjct:   23 FVASRLLAPRSPNDRKAAPYECGIIPGRETPERFPVRFFLVAMIFIVFDIEIIFFYPWAIAHRGLGLSGLVAVLLFSAAVFESFVYLIGNGALEWGPVK-RVRHDAAVSATRTTSSTIRRVGVRVVGLEGRDD 154          
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A538JUI9_9ACTN (NADH-quinone oxidoreductase subunit A n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JUI9_9ACTN)

HSP 1 Score: 160 bits (406), Expect = 4.580e-48
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 FVASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQ--VNTRQHEMRSSTRTTTTTIRRVGLEGR 378
            F+AS L APRRPT  K APYECGI+P REPP+RFPVRFYLVAM+F+IFDIEIIFLYPWA++ R+LA  GL  M+VF+  VF SFVYLI  G LDWGP +   +T  H   +S+RTT TT+RRVG  GR
Sbjct:   22 FLASGLLAPRRPTAAKEAPYECGIVPDREPPERFPVRFYLVAMIFVIFDIEIIFLYPWAVIFRQLAAFGLWEMLVFAAAVFISFVYLIGNGVLDWGPAKRIASTLDHGAFASSRTTETTVRRVGTTGR 149          
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Match: A0A7W0LSB3_9ACTN (NADH-quinone oxidoreductase subunit n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0LSB3_9ACTN)

HSP 1 Score: 159 bits (402), Expect = 2.100e-47
Identity = 82/123 (66.67%), Postives = 98/123 (79.67%), Query Frame = 1
Query:   10 SKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDIEIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQVNTRQHEMRSSTRTTTTTIRRVGLEGR 378
            SKL AP RPTV K APYE GIIP REPP+RFPVRFYLVAM+FIIFDIEIIFLYPWA+++REL   GLV M++F+  VF SF+YLI++GALDWGP++            RTTT+T+RRVGL+GR
Sbjct:   16 SKLLAPGRPTVAKSAPYESGIIPSREPPERFPVRFYLVAMIFIIFDIEIIFLYPWAVIYRELGTFGLVEMLLFAAAVFVSFLYLISRGALDWGPVRRRRPPEGAVDPARTTTSTVRRVGLDGR 138          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128544.5731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2D8X9_9ACTN7.370e-5466.43NADH-quinone oxidoreductase subunit A n=1 Tax=Acid... [more]
A0A7Y2DK86_9ACTN2.180e-5167.94NADH-quinone oxidoreductase subunit n=1 Tax=Acidim... [more]
A0A7W0LTA4_9ACTN3.330e-5167.46NADH-quinone oxidoreductase subunit A n=1 Tax=Acid... [more]
A0A7Y2IIF5_9ACTN2.880e-4965.19NADH-quinone oxidoreductase subunit n=1 Tax=Acidim... [more]
A0A6N7FQD4_9ACTN9.010e-4962.32NADH-quinone oxidoreductase subunit n=1 Tax=Acidim... [more]
A0A538DEW6_9ACTN1.650e-4865.08NADH-quinone oxidoreductase subunit A n=1 Tax=Acti... [more]
A0A6I3A6H2_9ACTN2.400e-4863.64NADH-quinone oxidoreductase subunit A n=2 Tax=root... [more]
A0A351KBC6_9ACTN2.830e-4865.41NADH-quinone oxidoreductase subunit A n=3 Tax=Acid... [more]
A0A538JUI9_9ACTN4.580e-4865.63NADH-quinone oxidoreductase subunit A n=1 Tax=Acti... [more]
A0A7W0LSB3_9ACTN2.100e-4766.67NADH-quinone oxidoreductase subunit n=1 Tax=Acidim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128544contigM-pyrifera_M_contig128544:77..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score149.8
Seed ortholog evalue9.4e-34
Seed eggNOG ortholog1313172.YM304_04060
Preferred namenuoA
KEGG rclassRC00061
KEGG koko:K00330
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044464,GO:0050136,GO:0055114,GO:0071944,GO:0098796,GO:1902494
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
EggNOG OGs2IKWT@201174,4CN51@84992,COG0838@1,COG0838@2
EC1.6.5.3
COG Functional cat.C
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.142536-CDS-M-pyrifera_M_contig128544:76..4991622815798.142536-CDS-M-pyrifera_M_contig128544:76..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128544 77..499 -
1692277574.3669007-CDS-M-pyrifera_M_contig128544:76..4991692277574.3669007-CDS-M-pyrifera_M_contig128544:76..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128544 77..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128544.5731.1prot_M-pyrifera_M_contig128544.5731.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128544 77..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128544.5731.1

>prot_M-pyrifera_M_contig128544.5731.1 ID=prot_M-pyrifera_M_contig128544.5731.1|Name=mRNA_M-pyrifera_M_contig128544.5731.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
FVASKLWAPRRPTVEKYAPYECGIIPGREPPQRFPVRFYLVAMLFIIFDI
EIIFLYPWAMVHRELAVPGLVAMIVFSLLVFESFVYLIAKGALDWGPLQV
NTRQHEMRSSTRTTTTTIRRVGLEGRFDEVRVPARAEEVA*
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mRNA from alignment at M-pyrifera_M_contig128544:77..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128544.5731.1 ID=mRNA_M-pyrifera_M_contig128544.5731.1|Name=mRNA_M-pyrifera_M_contig128544.5731.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig128544:77..499- (Macrocystis pyrifera P11B4 male)
TTCGTCGCATCGAAGCTCTGGGCTCCTCGCCGTCCAACGGTCGAGAAGTA CGCCCCCTACGAGTGCGGGATCATTCCCGGCCGCGAACCGCCACAGCGCT TCCCGGTGCGCTTCTACCTGGTGGCGATGCTGTTCATCATCTTCGACATC GAGATCATCTTCTTGTACCCGTGGGCGATGGTCCATCGTGAACTGGCCGT CCCCGGCCTCGTCGCGATGATCGTGTTCTCCCTTCTGGTGTTCGAATCGT TCGTCTATCTCATCGCCAAGGGCGCGCTCGACTGGGGTCCGTTGCAGGTC AACACCCGCCAGCACGAGATGCGTTCGAGCACCCGAACCACCACGACCAC GATCCGCCGAGTCGGTCTCGAAGGTCGTTTCGACGAAGTTCGAGTGCCCG CACGGGCAGAGGAAGTCGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128544:77..499-

>mRNA_M-pyrifera_M_contig128544.5731.1 ID=mRNA_M-pyrifera_M_contig128544.5731.1|Name=mRNA_M-pyrifera_M_contig128544.5731.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig128544:77..499- (Macrocystis pyrifera P11B4 male)
TTCGTCGCATCGAAGCTCTGGGCTCCTCGCCGTCCAACGGTCGAGAAGTA
CGCCCCCTACGAGTGCGGGATCATTCCCGGCCGCGAACCGCCACAGCGCT
TCCCGGTGCGCTTCTACCTGGTGGCGATGCTGTTCATCATCTTCGACATC
GAGATCATCTTCTTGTACCCGTGGGCGATGGTCCATCGTGAACTGGCCGT
CCCCGGCCTCGTCGCGATGATCGTGTTCTCCCTTCTGGTGTTCGAATCGT
TCGTCTATCTCATCGCCAAGGGCGCGCTCGACTGGGGTCCGTTGCAGGTC
AACACCCGCCAGCACGAGATGCGTTCGAGCACCCGAACCACCACGACCAC
GATCCGCCGAGTCGGTCTCGAAGGTCGTTTCGACGAAGTTCGAGTGCCCG
CACGGGCAGAGGAAGTCGCCTGATTCGTCGCATCGAAGCTCTGGGCTCCT
CGCCGTCCAACGGTCGAGAAGTACGCCCCCTACGAGTGCGGGATCATTCC
CGGCCGCGAACCGCCACAGCGCTTCCCGGTGCGCTTCTACCTGGTGGCGA
TGCTGTTCATCATCTTCGACATCGAGATCATCTTCTTGTACCCGTGGGCG
ATGGTCCATCGTGAACTGGCCGTCCCCGGCCTCGTCGCGATGATCGTGTT
CTCCCTTCTGGTGTTCGAATCGTTCGTCTATCTCATCGCCAAGGGCGCGC
TCGACTGGGGTCCGTTGCAGGTCAACACCCGCCAGCACGAGATGCGTTCG
AGCACCCGAACCACCACGACCACGATCCGCCGAGTCGGTCTCGAAGGTCG
TTTCGACGAAGTTCGAGTGCCCGCACGGGCAGAGGAAGTCGCCTGA
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