mRNA_M-pyrifera_M_contig12854.5729.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12854.5729.1
Unique NamemRNA_M-pyrifera_M_contig12854.5729.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12854.5729.1 vs. uniprot
Match: A0A6V1XUJ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XUJ0_HETAK)

HSP 1 Score: 54.7 bits (130), Expect = 2.270e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 NGRLVTVFLVVNFMIGSGILNTPQTFRDSGLAATTVIYFIAC 126
            NGR  T+FL++N MIGSGILN PQ F DSG+    ++Y I+C
Sbjct:   61 NGRGGTIFLILNTMIGSGILNQPQVFADSGIIGAFLMYGISC 102
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BLAST of mRNA_M-pyrifera_M_contig12854.5729.1 vs. uniprot
Match: D7FZR9_ECTSI (Transmembrane amino acid transporter protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR9_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-6
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 NGRLVTVFLVVNFMIGSGILNTPQTFRDSGLAATTVIYFIA 123
            N +++T  LV+N+MIGSGILN+PQ F  SG+   T++Y ++
Sbjct:   90 NSKVLTTLLVLNYMIGSGILNSPQVFEGSGIGPATILYAVS 130
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BLAST of mRNA_M-pyrifera_M_contig12854.5729.1 vs. uniprot
Match: A0A6H5KC39_9PHAE (Aa_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC39_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-6
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 NGRLVTVFLVVNFMIGSGILNTPQTFRDSGLAATTVIYFIA 123
            N +++T  LV+N+MIGSGILN+PQ F  SG+   T++Y ++
Sbjct:   90 NSKVLTTLLVLNYMIGSGILNSPQVFEGSGIGPATILYAVS 130
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BLAST of mRNA_M-pyrifera_M_contig12854.5729.1 vs. uniprot
Match: A0A7S2USJ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USJ8_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.410e-5
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 NGRLVTVFLVVNFMIGSGILNTPQTFRDSGLAATTVIYFI 120
            NG   T+ L++N MIGSGILN P  F  +G+ AT +IY I
Sbjct:   60 NGGGATIVLLINTMIGSGILNQPYVFSQAGIGATLIIYAI 99
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12854.5729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6V1XUJ0_HETAK2.270e-757.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FZR9_ECTSI1.090e-648.78Transmembrane amino acid transporter protein n=1 T... [more]
A0A6H5KC39_9PHAE1.090e-648.78Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2USJ8_9STRA6.410e-552.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12854contigM-pyrifera_M_contig12854:104..250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.0747657-CDS-M-pyrifera_M_contig12854:103..2501622815798.0747657-CDS-M-pyrifera_M_contig12854:103..250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12854 104..250 -
1692277574.3320491-CDS-M-pyrifera_M_contig12854:103..2501692277574.3320491-CDS-M-pyrifera_M_contig12854:103..250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12854 104..250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12854.5729.1prot_M-pyrifera_M_contig12854.5729.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12854 104..250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12854.5729.1

>prot_M-pyrifera_M_contig12854.5729.1 ID=prot_M-pyrifera_M_contig12854.5729.1|Name=mRNA_M-pyrifera_M_contig12854.5729.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
NGRLVTVFLVVNFMIGSGILNTPQTFRDSGLAATTVIYFIACESCVCG*
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mRNA from alignment at M-pyrifera_M_contig12854:104..250-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12854.5729.1 ID=mRNA_M-pyrifera_M_contig12854.5729.1|Name=mRNA_M-pyrifera_M_contig12854.5729.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig12854:104..250- (Macrocystis pyrifera P11B4 male)
AACGGTCGTCTCGTGACGGTGTTCCTCGTGGTGAACTTCATGATCGGGAG
CGGGATCCTGAACACGCCGCAGACGTTCCGCGACAGCGGGTTGGCGGCGA
CGACCGTGATCTACTTTATCGCCTGTGAGTCTTGTGTGTGTGGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12854:104..250-

>mRNA_M-pyrifera_M_contig12854.5729.1 ID=mRNA_M-pyrifera_M_contig12854.5729.1|Name=mRNA_M-pyrifera_M_contig12854.5729.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig12854:104..250- (Macrocystis pyrifera P11B4 male)
AACGGTCGTCTCGTGACGGTGTTCCTCGTGGTGAACTTCATGATCGGGAG
CGGGATCCTGAACACGCCGCAGACGTTCCGCGACAGCGGGTTGGCGGCGA
CGACCGTGATCTACTTTATCGCCTGTGAGTCTTGTGTGTGTGGGTAAAAC
GGTCGTCTCGTGACGGTGTTCCTCGTGGTGAACTTCATGATCGGGAGCGG
GATCCTGAACACGCCGCAGACGTTCCGCGACAGCGGGTTGGCGGCGACGA
CCGTGATCTACTTTATCGCCTGTGAGTCTTGTGTGTGTGGGTAA
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