mRNA_M-pyrifera_M_contig128499.5727.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128499.5727.1
Unique NamemRNA_M-pyrifera_M_contig128499.5727.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: D7G154_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G154_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.310e-30
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 FPSLPVSGRKHGTDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 192
            +P+ P S R   T  FHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE
Sbjct:   30 YPNKPPSVR-FLTRMFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 92
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BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: A0A6H5KW20_9PHAE (UBC core domain-containing protein n=5 Tax=Ochrophyta TaxID=2696291 RepID=A0A6H5KW20_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.610e-29
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 FPSLPVSGRKHGTDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 192
            +P+ P S R   T  FHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE
Sbjct:   63 YPNKPPSVR-FLTRMFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 125
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BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: A0A1Z5KB46_FISSO (Ubiquitin-conjugating enzyme E2 A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB46_FISSO)

HSP 1 Score: 103 bits (256), Expect = 5.820e-27
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   37 TDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 192
            T  FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNPASPANSE
Sbjct:   46 TKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPASPANSE 97
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BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: B8CAB3_THAPS (Ubiquitin-conjugating enzyme 1 n=19 Tax=Bacillariophyta TaxID=2836 RepID=B8CAB3_THAPS)

HSP 1 Score: 103 bits (256), Expect = 1.260e-26
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   37 TDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 192
            T  FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNPASPANSE
Sbjct:   74 TKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPASPANSE 125
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BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: A0A7S0FQ92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FQ92_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.350e-26
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   37 TDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANS 189
            T  FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNPASPANS
Sbjct:   75 TKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPASPANS 125
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BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: A0A4D9CYF5_9STRA (UBC core domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYF5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.930e-26
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   37 TDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 192
            T  FHPNIYN+GQICLDILQNQWSPIYD+ AILTSIQSLLCDPNPASPANSE
Sbjct:   74 TKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSE 125
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BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: A0A7S2X4R4_PROMC (Hypothetical protein (Fragment) n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2X4R4_PROMC)

HSP 1 Score: 101 bits (251), Expect = 5.820e-26
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   37 TDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 192
            T  FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNP SPANSE
Sbjct:   31 TKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPQSPANSE 82
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BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: K3WSJ4_GLOUD (UBC core domain-containing protein n=37 Tax=Oomycota TaxID=4762 RepID=K3WSJ4_GLOUD)

HSP 1 Score: 100 bits (250), Expect = 1.030e-25
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   37 TDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 192
            T  FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNP SPANSE
Sbjct:   74 TKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSE 125
[Close]
BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: F0WM57_9STRA (Ubiquitinconjugating enzyme E2 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM57_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.650e-25
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   37 TDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 192
            T  FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNP SPANSE
Sbjct:   92 TKMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSE 143
[Close]
BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Match: W7UAM9_9STRA (Ubiquitin-conjugating enzyme e2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAM9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.730e-25
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   37 TDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSE 192
            T  FHPNIYN+GQICLDILQNQWSPIYD+ AILTSIQSLLCDPNPASPANSE
Sbjct:   74 TKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSE 125
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128499.5727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G154_ECTSI6.310e-3084.38UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KW20_9PHAE1.610e-2984.38UBC core domain-containing protein n=5 Tax=Ochroph... [more]
A0A1Z5KB46_FISSO5.820e-2792.31Ubiquitin-conjugating enzyme E2 A n=1 Tax=Fistulif... [more]
B8CAB3_THAPS1.260e-2692.31Ubiquitin-conjugating enzyme 1 n=19 Tax=Bacillario... [more]
A0A7S0FQ92_9STRA3.350e-2692.16Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A4D9CYF5_9STRA3.930e-2690.38UBC core domain-containing protein n=2 Tax=Monodop... [more]
A0A7S2X4R4_PROMC5.820e-2690.38Hypothetical protein (Fragment) n=1 Tax=Prorocentr... [more]
K3WSJ4_GLOUD1.030e-2590.38UBC core domain-containing protein n=37 Tax=Oomyco... [more]
F0WM57_9STRA1.650e-2590.38Ubiquitinconjugating enzyme E2 putative n=1 Tax=Al... [more]
W7UAM9_9STRA1.730e-2590.38Ubiquitin-conjugating enzyme e2 n=1 Tax=Nannochlor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128499contigM-pyrifera_M_contig128499:233..424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.3e-22
Seed eggNOG ortholog2880.D7G154
KEGG koko:K10573
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031371,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0033503,GO:0033554,GO:0034641,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051603,GO:0051716,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0419@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-08_005320.1
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.9939358-CDS-M-pyrifera_M_contig128499:232..4241622815797.9939358-CDS-M-pyrifera_M_contig128499:232..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128499 233..424 -
1692277574.3057437-CDS-M-pyrifera_M_contig128499:232..4241692277574.3057437-CDS-M-pyrifera_M_contig128499:232..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128499 233..424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128499.5727.1prot_M-pyrifera_M_contig128499.5727.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128499 233..424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128499.5727.1

>prot_M-pyrifera_M_contig128499.5727.1 ID=prot_M-pyrifera_M_contig128499.5727.1|Name=mRNA_M-pyrifera_M_contig128499.5727.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
FPSLPVSGRKHGTDRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQS
LLCDPNPASPANSE
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mRNA from alignment at M-pyrifera_M_contig128499:233..424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128499.5727.1 ID=mRNA_M-pyrifera_M_contig128499.5727.1|Name=mRNA_M-pyrifera_M_contig128499.5727.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig128499:233..424- (Macrocystis pyrifera P11B4 male)
TTCCCCTCCCTCCCGGTGTCTGGACGAAAACATGGAACGGACAGGTTCCA
TCCTAACATCTACAATAACGGTCAGATCTGTCTCGATATCCTGCAGAACC
AGTGGAGTCCGATCTACGACATCTGCGCCATCCTGACGTCTATCCAGTCT
CTCTTGTGCGACCCCAACCCGGCGTCTCCGGCGAATTCGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128499:233..424-

>mRNA_M-pyrifera_M_contig128499.5727.1 ID=mRNA_M-pyrifera_M_contig128499.5727.1|Name=mRNA_M-pyrifera_M_contig128499.5727.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig128499:233..424- (Macrocystis pyrifera P11B4 male)
TTCCCCTCCCTCCCGGTGTCTGGACGAAAACATGGAACGGACAGGTTCCA
TCCTAACATCTACAATAACGGTCAGATCTGTCTCGATATCCTGCAGAACC
AGTGGAGTCCGATCTACGACATCTGCGCCATCCTGACGTCTATCCAGTCT
CTCTTGTGCGACCCCAACCCGGCGTCTCCGGCGAATTCGGAGTTCCCCTC
CCTCCCGGTGTCTGGACGAAAACATGGAACGGACAGGTTCCATCCTAACA
TCTACAATAACGGTCAGATCTGTCTCGATATCCTGCAGAACCAGTGGAGT
CCGATCTACGACATCTGCGCCATCCTGACGTCTATCCAGTCTCTCTTGTG
CGACCCCAACCCGGCGTCTCCGGCGAATTCGGAG
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