mRNA_M-pyrifera_M_contig128370.5700.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128370.5700.1
Unique NamemRNA_M-pyrifera_M_contig128370.5700.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: A0A7S1XVQ5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVQ5_9STRA)

HSP 1 Score: 214 bits (544), Expect = 5.090e-62
Identity = 94/137 (68.61%), Postives = 114/137 (83.21%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            ITH DFS DG++LQSNCGAYELLF D  +G+QIT+AS++RD  W++WTCTLGWPVQGIWPK ADGTDVNA CRS +GG++AT+DDFGKV +F+YPCV  GA +    GHSSHVTN RF+A D  L++ GGNDRC+FQ
Sbjct:  579 ITHFDFSRDGKYLQSNCGAYELLFSDVSNGRQITAASSLRDAAWSTWTCTLGWPVQGIWPKEADGTDVNAVCRSHAGGLIATSDDFGKVKVFRYPCVVKGAQNQELSGHSSHVTNVRFSAFDAALLSCGGNDRCIFQ 715          
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: A0A7S2S9Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9Q1_9STRA)

HSP 1 Score: 202 bits (514), Expect = 9.000e-60
Identity = 92/137 (67.15%), Postives = 109/137 (79.56%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            ITH+DFS DGR+LQS CGAYE+LF D  +GKQITSAS ++D +WASWTCTLGWPVQGIWP  ADGTDVN+  R  +  ++AT DDFGKV LF+YPC+  GA +    GHSSHVTN R+TA D YL++ GGNDRCVFQ
Sbjct:   66 ITHLDFSEDGRYLQSTCGAYEILFSDTVTGKQITSASDLKDTQWASWTCTLGWPVQGIWPACADGTDVNSVSRCHAQILLATGDDFGKVKLFRYPCIPKGAHALEFAGHSSHVTNVRWTALDDYLISTGGNDRCVFQ 202          
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: A0A6G0XM90_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XM90_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.980e-56
Identity = 80/137 (58.39%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            ITH+DFS D ++LQSNCG YELLF D  +GKQI SA  ++DV W SWTC LGWPVQGIWP+ ADGTD+N+ C S+S  ++ T DD   V +F+YPC++ GA     +GHSSHVTN RFT  D+Y+++ GGNDR   Q
Sbjct:  109 ITHIDFSSDDKYLQSNCGGYELLFCDTQTGKQIKSAKMLKDVMWDSWTCALGWPVQGIWPEFADGTDINSVCASASRTLITTGDDSSCVKVFRYPCLTKGAKFIQGKGHSSHVTNVRFTRDDKYIISIGGNDRTTMQ 245          
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: A0A2D4C2Z3_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2Z3_PYTIN)

HSP 1 Score: 197 bits (502), Expect = 5.260e-56
Identity = 89/137 (64.96%), Postives = 108/137 (78.83%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            ITH DFS D + LQSNCGAYELLF D  SG+Q+ SASA++DV WA+WTCTLGWPVQGIWP+ ADGTDVNA C S+S  ++AT DD G+V +F+YPC   GA    ARGHSSHVTN RF+  D++L++ GGNDR +FQ
Sbjct: 4472 ITHFDFSSDSKQLQSNCGAYELLFCDVSSGEQLRSASALKDVAWATWTCTLGWPVQGIWPECADGTDVNAVCASASRTLLATGDDSGRVKMFRYPCTIKGAKWLEARGHSSHVTNVRFSHDDKFLISLGGNDRSIFQ 4608          
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: A0A1V9YC52_9STRA (Microtubule-associated protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC52_9STRA)

HSP 1 Score: 197 bits (500), Expect = 9.610e-56
Identity = 90/137 (65.69%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            IT VDFS D +FLQSNCGAYELLFW A  GKQ+TSA+A+RDV+WA+WTCTLGWPVQGIWPK  DGTDVNA  R++S   + T DD G+VNLF+YPCV+  A++ T RGHSSHVTN  FT  D + V+ GG D  +FQ
Sbjct: 2076 ITAVDFSADSQFLQSNCGAYELLFWQADKGKQVTSANALRDVKWATWTCTLGWPVQGIWPKGGDGTDVNAAARTTSQKELLTVDDHGQVNLFRYPCVAPHATAKTYRGHSSHVTNCIFTKGDMFAVSTGGLDNAIFQ 2212          
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: A0A8K1FCK6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCK6_PYTOL)

HSP 1 Score: 197 bits (500), Expect = 9.680e-56
Identity = 88/137 (64.23%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            ITH DFS D RFLQSNCGAYELLF D  +GKQITSAS+ +DV+W +WTC LGWPVQGIWP  +DGT+VNA  RS+ G ++ + DDFG V LF+YPCV+  ASS   RGHSSHVTN R+  SD ++++ GGNDRCV +
Sbjct: 1490 ITHFDFSADSRFLQSNCGAYELLFSDPATGKQITSASSTKDVKWGTWTCVLGWPVQGIWPPCSDGTEVNAVDRSAKGDLLVSGDDFGLVKLFRYPCVTKNASSADYRGHSSHVTNVRWAVSDTHVISVGGNDRCVME 1626          
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: A0A067BPL2_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BPL2_SAPPC)

HSP 1 Score: 195 bits (495), Expect = 4.530e-55
Identity = 90/137 (65.69%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            IT +DFS D  +LQSNCGAY+LLFW A  GKQ+TSA+A+RDV+WA+WTCTLGWPVQGIWPK ADGTDVNAT R+SS   + T DD G VNLF+YPCV+A A++ T  GHSSHVTN  FT  D + V+ GG D  +FQ
Sbjct: 2074 ITSLDFSSDASYLQSNCGAYDLLFWQADKGKQVTSANALRDVKWATWTCTLGWPVQGIWPKGADGTDVNATARASSQRDLLTVDDNGHVNLFRYPCVAAHATAKTYLGHSSHVTNCTFTKGDMFAVSTGGLDNAIFQ 2210          
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: K3WHU2_GLOUD (EF-hand domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHU2_GLOUD)

HSP 1 Score: 195 bits (495), Expect = 4.540e-55
Identity = 85/137 (62.04%), Postives = 109/137 (79.56%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            ITH+DFS D + LQSNCGAYELLF DA +G+ ITSAS+ +D +W +WTC LGWPVQGIWP  +DGTDVNA  R+S G ++AT+DDFG V L++YPCV+  ASS   RGHSSHVTN R+ A+D ++++ GGNDRC+ +
Sbjct: 1479 ITHIDFSSDSKILQSNCGAYELLFSDATNGRHITSASSTKDTQWQTWTCVLGWPVQGIWPPCSDGTDVNAVDRNSKGNLLATSDDFGLVKLYRYPCVTKNASSTENRGHSSHVTNVRWNANDTHVISVGGNDRCIME 1615          
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: A0A662X5C2_9STRA (EF-hand domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5C2_9STRA)

HSP 1 Score: 194 bits (493), Expect = 8.430e-55
Identity = 86/137 (62.77%), Postives = 108/137 (78.83%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            ITH+DFS DG  +QSNCGAYELLF  A +GKQITSAS+ +D +W SWTCTLGWPVQGIWP+ +DGTDVNA  R+S   ++ T+DDFG V L++YPC  A ASS   RGHSSHVTN R++ +D ++++ GGNDRCV +
Sbjct: 1528 ITHLDFSADGSVIQSNCGAYELLFSSAATGKQITSASSTKDTQWQSWTCTLGWPVQGIWPRCSDGTDVNAVARNSREDLLVTSDDFGLVKLYRYPCTVAHASSVDQRGHSSHVTNVRWSHNDSHVISTGGNDRCVME 1664          
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Match: A0A0N7L5A4_PLAHL (Echinoderm microtubule-associated 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5A4_PLAHL)

HSP 1 Score: 193 bits (491), Expect = 1.560e-54
Identity = 86/137 (62.77%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    1 ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCTLGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAGASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ 411
            ITH DFS D + LQSNCGAYELLF +A +GK ITSAS+ RD  W SWTC LGWPVQGIWP  +DGTDVN+  R+SSG ++ TADDFG+V L++YPCV+  ASS   RGHSSHVTN R++ +D Y+++ GGNDR + +
Sbjct: 1363 ITHFDFSSDSQILQSNCGAYELLFSNANTGKHITSASSTRDTPWYSWTCVLGWPVQGIWPPFSDGTDVNSVARNSSGHLLVTADDFGRVKLYRYPCVAKNASSVDYRGHSSHVTNVRWSCNDSYIISIGGNDRAIME 1499          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128370.5700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1XVQ5_9STRA5.090e-6268.61Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S2S9Q1_9STRA9.000e-6067.15Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6G0XM90_9STRA2.980e-5658.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4C2Z3_PYTIN5.260e-5664.96Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A1V9YC52_9STRA9.610e-5665.69Microtubule-associated protein n=1 Tax=Achlya hypo... [more]
A0A8K1FCK6_PYTOL9.680e-5664.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067BPL2_SAPPC4.530e-5565.69EF-hand domain-containing protein n=2 Tax=Saproleg... [more]
K3WHU2_GLOUD4.540e-5562.04EF-hand domain-containing protein n=1 Tax=Globispo... [more]
A0A662X5C2_9STRA8.430e-5562.77EF-hand domain-containing protein n=1 Tax=Nothophy... [more]
A0A0N7L5A4_PLAHL1.560e-5462.77Echinoderm microtubule-associated 6 n=1 Tax=Plasmo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128370contigM-pyrifera_M_contig128370:89..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue1.1e-47
Seed eggNOG ortholog65071.PYU1_T004534
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Microtubule-associated protein. Source PGD
EggNOG OGs1MD8U@121069,COG2319@1,KOG2106@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.8308342-CDS-M-pyrifera_M_contig128370:88..4991622815796.8308342-CDS-M-pyrifera_M_contig128370:88..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128370 89..499 -
1692277573.8402288-CDS-M-pyrifera_M_contig128370:88..4991692277573.8402288-CDS-M-pyrifera_M_contig128370:88..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128370 89..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128370.5700.1prot_M-pyrifera_M_contig128370.5700.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128370 89..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128370.5700.1

>prot_M-pyrifera_M_contig128370.5700.1 ID=prot_M-pyrifera_M_contig128370.5700.1|Name=mRNA_M-pyrifera_M_contig128370.5700.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
ITHVDFSVDGRFLQSNCGAYELLFWDAGSGKQITSASAVRDVEWASWTCT
LGWPVQGIWPKRADGTDVNATCRSSSGGVVATADDFGKVNLFQYPCVSAG
ASSFTARGHSSHVTNARFTASDRYLVTAGGNDRCVFQ
back to top

mRNA from alignment at M-pyrifera_M_contig128370:89..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128370.5700.1 ID=mRNA_M-pyrifera_M_contig128370.5700.1|Name=mRNA_M-pyrifera_M_contig128370.5700.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig128370:89..499- (Macrocystis pyrifera P11B4 male)
ATCACGCACGTGGACTTTAGCGTGGACGGTCGCTTCCTGCAGTCCAACTG CGGCGCGTACGAGCTGCTGTTCTGGGACGCGGGCAGCGGCAAGCAGATCA CGAGCGCCAGCGCGGTGCGGGACGTGGAGTGGGCGTCGTGGACGTGCACG CTGGGCTGGCCGGTGCAGGGCATCTGGCCGAAGCGAGCGGACGGCACGGA CGTGAACGCCACGTGCCGCAGCAGCAGCGGCGGCGTGGTGGCCACCGCCG ACGACTTTGGCAAGGTGAACCTGTTCCAGTACCCCTGCGTCTCCGCCGGC GCCTCCTCCTTCACCGCGCGCGGCCACTCCTCGCACGTCACCAACGCCAG GTTCACCGCCTCCGACCGCTACCTGGTCACCGCCGGCGGCAACGACCGCT GCGTGTTCCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig128370:89..499-

>mRNA_M-pyrifera_M_contig128370.5700.1 ID=mRNA_M-pyrifera_M_contig128370.5700.1|Name=mRNA_M-pyrifera_M_contig128370.5700.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig128370:89..499- (Macrocystis pyrifera P11B4 male)
ATCACGCACGTGGACTTTAGCGTGGACGGTCGCTTCCTGCAGTCCAACTG
CGGCGCGTACGAGCTGCTGTTCTGGGACGCGGGCAGCGGCAAGCAGATCA
CGAGCGCCAGCGCGGTGCGGGACGTGGAGTGGGCGTCGTGGACGTGCACG
CTGGGCTGGCCGGTGCAGGGCATCTGGCCGAAGCGAGCGGACGGCACGGA
CGTGAACGCCACGTGCCGCAGCAGCAGCGGCGGCGTGGTGGCCACCGCCG
ACGACTTTGGCAAGGTGAACCTGTTCCAGTACCCCTGCGTCTCCGCCGGC
GCCTCCTCCTTCACCGCGCGCGGCCACTCCTCGCACGTCACCAACGCCAG
GTTCACCGCCTCCGACCGCTACCTGGTCACCGCCGGCGGCAACGACCGCT
GCGTGTTCCAGATCACGCACGTGGACTTTAGCGTGGACGGTCGCTTCCTG
CAGTCCAACTGCGGCGCGTACGAGCTGCTGTTCTGGGACGCGGGCAGCGG
CAAGCAGATCACGAGCGCCAGCGCGGTGCGGGACGTGGAGTGGGCGTCGT
GGACGTGCACGCTGGGCTGGCCGGTGCAGGGCATCTGGCCGAAGCGAGCG
GACGGCACGGACGTGAACGCCACGTGCCGCAGCAGCAGCGGCGGCGTGGT
GGCCACCGCCGACGACTTTGGCAAGGTGAACCTGTTCCAGTACCCCTGCG
TCTCCGCCGGCGCCTCCTCCTTCACCGCGCGCGGCCACTCCTCGCACGTC
ACCAACGCCAGGTTCACCGCCTCCGACCGCTACCTGGTCACCGCCGGCGG
CAACGACCGCTGCGTGTTCCAG
back to top