mRNA_M-pyrifera_M_contig128359.5697.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128359.5697.1
Unique NamemRNA_M-pyrifera_M_contig128359.5697.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A7K2DBG4_9ACTN (NADH-quinone oxidoreductase subunit C n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2DBG4_9ACTN)

HSP 1 Score: 179 bits (454), Expect = 3.870e-55
Identity = 87/143 (60.84%), Postives = 98/143 (68.53%), Query Frame = 1 
Query:   10 VLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGAPGAR 438
            V+HP+P QW E+AA   ADGF   +DLTAVDYLTY   R LP+GV  ERFEVVA+    E   RL  +VQ+ AD P IP+L   +PG + LERE YDMFGI F  HPD SRILMPE W GHPLRKDY  G IPVQFK A   R
Sbjct:   20 VIHPSPSQWFEVAAAARADGFDQLIDLTAVDYLTYSADRALPEGVQPERFEVVASLMSHERRERLRMRVQVPADDPSIPTLFDLWPGAENLEREAYDMFGIVFEGHPDPSRILMPEDWSGHPLRKDYDSGEIPVQFKAASNVR 162
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BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A7K2BS35_9ACTN (NADH-quinone oxidoreductase subunit C n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2BS35_9ACTN)

HSP 1 Score: 178 bits (451), Expect = 1.110e-54
Identity = 86/143 (60.14%), Postives = 100/143 (69.93%), Query Frame = 1 
Query:   10 VLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGAPGAR 438
            V+HP+P QWL++AA   ADGF   +DLTAVDYLTY   R LP+GV  ERFEVVA+        RL  +VQ+ AD P +P+L   +PG + LEREVYDMFGI F  HPDLSRILMPE W G+PLRKDY  G IPVQFK A   R
Sbjct:   20 VIHPSPSQWLDVAAAARADGFDQLVDLTAVDYLTYGADRSLPEGVQPERFEVVASLMSHARRERLRMRVQVSADDPALPTLFDLWPGSESLEREVYDMFGIAFEGHPDLSRILMPEDWPGNPLRKDYDSGRIPVQFKAASNVR 162
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BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A6B1E9Z8_9ACTN (NADH-quinone oxidoreductase subunit C n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E9Z8_9ACTN)

HSP 1 Score: 176 bits (447), Expect = 4.490e-54
Identity = 85/143 (59.44%), Postives = 99/143 (69.23%), Query Frame = 1 
Query:   10 VLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGAPGAR 438
            V+HP+  +W ++AA   ADGF   +DLTAVDYLTY   R LPD V  ERFEVVA+    E   RL  +VQ+ AD P +P+L   +PG + LEREVYDMFGI F  HPDLSRILMPE W GHPLRKDY +G IPVQFK A   R
Sbjct:   20 VVHPSRSEWCDVAAAARADGFDQLIDLTAVDYLTYGADRGLPDQVAPERFEVVASLMSHERRERLRMRVQVPADDPTLPTLFDLWPGSESLEREVYDMFGIVFEGHPDLSRILMPEDWPGHPLRKDYDVGQIPVQFKAASNVR 162
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BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A7V9EVV0_9ACTN (NADH-quinone oxidoreductase subunit C n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9EVV0_9ACTN)

HSP 1 Score: 176 bits (447), Expect = 4.490e-54
Identity = 84/145 (57.93%), Postives = 103/145 (71.03%), Query Frame = 1 
Query:    4 RLVLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGAPGAR 438
            ++VLHP    +  L A L  DGFT+ LD+TAVDYLT+ G   LP  +V ERFEV+A     E   R+  +VQ+    PV+ SL   +PG + +EREV+DMFGI F DHPDL+RILMPE W+GHPLRKDYA+G IPVQFKGAPGAR
Sbjct:   18 QIVLHPDRAGYRSLVADLRRDGFTVCLDVTAVDYLTHPGRSGLPPDIVPERFEVMAVLLSFERRERVRLRVQVPETDPVVSSLYDLHPGSEAMEREVFDMFGIVFEDHPDLTRILMPEDWEGHPLRKDYAVGRIPVQFKGAPGAR 162
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BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A662E562_9ACTN (NADH-quinone oxidoreductase subunit C n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662E562_9ACTN)

HSP 1 Score: 176 bits (445), Expect = 8.490e-54
Identity = 84/142 (59.15%), Postives = 103/142 (72.54%), Query Frame = 1 
Query:    1 ERLVLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGA 426
            E+ VL+P+ EQ+ E+   L  DGF+M +DLT VDYL Y G RPLPDGV  ERFEVV    DI   RR+  +VQ+      +PSL   YPG + +EREV+DMFG+ FTDHPDL+RILMPE W+GHPLRKDY +G+IPVQFK A
Sbjct:   18 EQDVLYPSHEQYFEVIGALADDGFSMCVDLTGVDYLEYSG-RPLPDGVQAERFEVVVNLLDIGQRRRIRVRVQVPESDASLPSLFDIYPGTEAMEREVFDMFGVSFTDHPDLTRILMPEDWEGHPLRKDYDVGTIPVQFKEA 158
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BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A2D7RXH1_9ACTN (NADH-quinone oxidoreductase subunit C n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7RXH1_9ACTN)

HSP 1 Score: 175 bits (444), Expect = 2.120e-53
Identity = 81/144 (56.25%), Postives = 102/144 (70.83%), Query Frame = 1 
Query:    7 LVLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGAPGAR 438
            +VLH + E +LE+ +   ADGF   +DLTAVDYLTY G R LP G+  ERFEVV +  +     R+  + Q+ AD P IPSL   +PG ++LERE +DMFGI F+DHPD+SR+LMPE W GHPLRKDYA+G+IPVQFK A   R
Sbjct:   35 VVLHASVETYLEVCSEARADGFDQLIDLTAVDYLTYAGERALPGGLTPERFEVVTSLINHVRRERIRIRTQVSADEPTIPSLFDLWPGSEYLEREAFDMFGITFSDHPDMSRVLMPEDWVGHPLRKDYAVGAIPVQFKAASNER 178
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BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A354B6D8_9ACTN (NADH-quinone oxidoreductase subunit C n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B6D8_9ACTN)

HSP 1 Score: 175 bits (443), Expect = 3.210e-53
Identity = 81/144 (56.25%), Postives = 101/144 (70.14%), Query Frame = 1 
Query:    7 LVLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGAPGAR 438
            +VLH T E +L++ +   ADGF   +DLTAVDYLTY G R LP G+  ERFEVV +  +     R+  + Q+ AD P IPSL   +PG ++LERE +DMFGI F DHPD+SR+LMPE W GHPLRKDYA+G+IPVQFK A   R
Sbjct:   37 VVLHATVETYLDVCSEAHADGFDQLIDLTAVDYLTYAGERALPGGLTPERFEVVTSLINHVRRERIRIRTQVSADEPTIPSLFDLWPGSEYLEREAFDMFGITFADHPDMSRVLMPEDWVGHPLRKDYAVGAIPVQFKAASNER 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A3M2GML2_ACTSX (NADH-quinone oxidoreductase subunit C n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GML2_ACTSX)

HSP 1 Score: 174 bits (442), Expect = 4.700e-53
Identity = 88/142 (61.97%), Postives = 104/142 (73.24%), Query Frame = 1 
Query:   10 VLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGAPGA 435
            VL  T E W+E+A  L A+G++  +DLTAVDYLTY   R LP G+  ERFEVVA   D+   RRL  +VQ+ AD P +P+L   +PG++ LEREVYDMFGI FTDHPDLSRILMPE W GHPLRKD+ IG IPVQFK AP A
Sbjct:   40 VLFCTRENWVEVAEALRAEGYSSLVDLTAVDYLTYDAPRHLPAGIDPERFEVVAVVVDVARARRLRLRVQVPADDPRLPTLFDVWPGVENLEREVYDMFGITFTDHPDLSRILMPEDWIGHPLRKDHEIGRIPVQFK-APDA 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A2E0RNZ1_9ACTN (NADH-quinone oxidoreductase subunit C n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RNZ1_9ACTN)

HSP 1 Score: 174 bits (441), Expect = 6.070e-53
Identity = 84/139 (60.43%), Postives = 100/139 (71.94%), Query Frame = 1 
Query:   10 VLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGA 426
            V+ PT EQ+L+L   L  DG+TM +DL  VDYL Y   RPLPDG+  ERFEVV    DI + RR+  +VQ+  D P IP+L   +PG +  ERE YDMFGI FTDHPD++RILMPE W GHPLRKDYA+G IPVQFKGA
Sbjct:   39 VVFPTREQYLDLVKALADDGYTMVIDLCGVDYLEYFD-RPLPDGIEPERFEVVVNLLDIAHRRRVRIRVQVPEDEPTIPTLFDLHPGAEAYERETYDMFGIVFTDHPDMTRILMPEDWIGHPLRKDYAVGKIPVQFKGA 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Match: A0A7W0KXM5_9ACTN (NADH-quinone oxidoreductase subunit C n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KXM5_9ACTN)

HSP 1 Score: 172 bits (436), Expect = 1.640e-52
Identity = 81/141 (57.45%), Postives = 103/141 (73.05%), Query Frame = 1 
Query:    4 RLVLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVGERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYDMFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGA 426
            ++VLHP+ E+++++   +  DGFT   DLTAVD+L + G RPLPDGV  ERFEVV    DI+  RR   +VQ+    P IP+L   +PG + +EREVYDMFG+EFTDHPDL+RILMPE W GHPLRKD  +G+IPVQFK A
Sbjct:   12 QVVLHPSRERYVDVVKAMADDGFTTCADLTAVDFLAHPG-RPLPDGVTAERFEVVVNLLDIQTGRRTRLRVQVPEGDPTIPTLFDVHPGTEAMEREVYDMFGVEFTDHPDLTRILMPEDWIGHPLRKDETVGAIPVQFKEA 151
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128359.5697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K2DBG4_9ACTN3.870e-5560.84NADH-quinone oxidoreductase subunit C n=2 Tax=Acid... [more]
A0A7K2BS35_9ACTN1.110e-5460.14NADH-quinone oxidoreductase subunit C n=3 Tax=Acid... [more]
A0A6B1E9Z8_9ACTN4.490e-5459.44NADH-quinone oxidoreductase subunit C n=1 Tax=Acid... [more]
A0A7V9EVV0_9ACTN4.490e-5457.93NADH-quinone oxidoreductase subunit C n=1 Tax=Acid... [more]
A0A662E562_9ACTN8.490e-5459.15NADH-quinone oxidoreductase subunit C n=1 Tax=Acti... [more]
A0A2D7RXH1_9ACTN2.120e-5356.25NADH-quinone oxidoreductase subunit C n=1 Tax=Acid... [more]
A0A354B6D8_9ACTN3.210e-5356.25NADH-quinone oxidoreductase subunit C n=8 Tax=Acid... [more]
A0A3M2GML2_ACTSX4.700e-5361.97NADH-quinone oxidoreductase subunit C n=1 Tax=Acti... [more]
A0A2E0RNZ1_9ACTN6.070e-5360.43NADH-quinone oxidoreductase subunit C n=1 Tax=Acid... [more]
A0A7W0KXM5_9ACTN1.640e-5257.45NADH-quinone oxidoreductase subunit C n=1 Tax=Acid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128359contigM-pyrifera_M_contig128359:6..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score171.8
Seed ortholog evalue2.4e-40
Seed eggNOG ortholog1313172.YM304_04080
Preferred namenuoC
KEGG rclassRC00061
KEGG koko:K00332
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.Respiratory-chain NADH dehydrogenase, 30 Kd subunit
EggNOG OGs2GIRH@201174,4CN4G@84992,COG0852@1,COG0852@2
EC1.6.5.3
COG Functional cat.C
BiGG ReactioniAF987.Gmet_3353
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.713228-CDS-M-pyrifera_M_contig128359:5..4461622815796.713228-CDS-M-pyrifera_M_contig128359:5..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128359 6..446 +
1692277573.8032231-CDS-M-pyrifera_M_contig128359:5..4461692277573.8032231-CDS-M-pyrifera_M_contig128359:5..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128359 6..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128359.5697.1prot_M-pyrifera_M_contig128359.5697.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128359 6..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128359.5697.1

>prot_M-pyrifera_M_contig128359.5697.1 ID=prot_M-pyrifera_M_contig128359.5697.1|Name=mRNA_M-pyrifera_M_contig128359.5697.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
ERLVLHPTPEQWLELAATLLADGFTMGLDLTAVDYLTYQGHRPLPDGVVG
ERFEVVAAFADIENNRRLWAKVQLGADAPVIPSLTTYYPGLDFLEREVYD
MFGIEFTDHPDLSRILMPESWQGHPLRKDYAIGSIPVQFKGAPGAR*
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mRNA from alignment at M-pyrifera_M_contig128359:6..446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128359.5697.1 ID=mRNA_M-pyrifera_M_contig128359.5697.1|Name=mRNA_M-pyrifera_M_contig128359.5697.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig128359:6..446+ (Macrocystis pyrifera P11B4 male)
GAACGACTCGTCCTGCATCCGACCCCAGAGCAGTGGCTCGAGTTGGCCGC
GACGTTGCTCGCCGACGGGTTCACCATGGGCCTCGACCTCACGGCCGTCG
ACTATCTCACCTACCAGGGGCATCGTCCCCTTCCCGACGGTGTCGTCGGG
GAACGGTTCGAGGTCGTCGCCGCCTTCGCCGACATCGAGAACAATCGGCG
CCTCTGGGCCAAGGTCCAGCTCGGTGCCGACGCTCCGGTGATCCCCTCGC
TGACCACGTACTACCCCGGGCTCGATTTCCTCGAGCGTGAGGTCTACGAC
ATGTTCGGCATCGAATTCACCGACCACCCTGATCTGTCTCGCATCCTGAT
GCCGGAGTCATGGCAGGGTCACCCGTTGCGCAAGGACTACGCCATCGGCT
CGATCCCCGTGCAATTCAAGGGCGCGCCGGGCGCCCGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128359:6..446+

>mRNA_M-pyrifera_M_contig128359.5697.1 ID=mRNA_M-pyrifera_M_contig128359.5697.1|Name=mRNA_M-pyrifera_M_contig128359.5697.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig128359:6..446+ (Macrocystis pyrifera P11B4 male)
GAACGACTCGTCCTGCATCCGACCCCAGAGCAGTGGCTCGAGTTGGCCGC
GACGTTGCTCGCCGACGGGTTCACCATGGGCCTCGACCTCACGGCCGTCG
ACTATCTCACCTACCAGGGGCATCGTCCCCTTCCCGACGGTGTCGTCGGG
GAACGGTTCGAGGTCGTCGCCGCCTTCGCCGACATCGAGAACAATCGGCG
CCTCTGGGCCAAGGTCCAGCTCGGTGCCGACGCTCCGGTGATCCCCTCGC
TGACCACGTACTACCCCGGGCTCGATTTCCTCGAGCGTGAGGTCTACGAC
ATGTTCGGCATCGAATTCACCGACCACCCTGATCTGTCTCGCATCCTGAT
GCCGGAGTCATGGCAGGGTCACCCGTTGCGCAAGGACTACGCCATCGGCT
CGATCCCCGTGCAATTCAAGGGCGCGCCGGGCGCCCGCTAGGAACGACTC
GTCCTGCATCCGACCCCAGAGCAGTGGCTCGAGTTGGCCGCGACGTTGCT
CGCCGACGGGTTCACCATGGGCCTCGACCTCACGGCCGTCGACTATCTCA
CCTACCAGGGGCATCGTCCCCTTCCCGACGGTGTCGTCGGGGAACGGTTC
GAGGTCGTCGCCGCCTTCGCCGACATCGAGAACAATCGGCGCCTCTGGGC
CAAGGTCCAGCTCGGTGCCGACGCTCCGGTGATCCCCTCGCTGACCACGT
ACTACCCCGGGCTCGATTTCCTCGAGCGTGAGGTCTACGACATGTTCGGC
ATCGAATTCACCGACCACCCTGATCTGTCTCGCATCCTGATGCCGGAGTC
ATGGCAGGGTCACCCGTTGCGCAAGGACTACGCCATCGGCTCGATCCCCG
TGCAATTCAAGGGCGCGCCGGGCGCCCGCTAG
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