mRNA_M-pyrifera_M_contig128350.5696.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128350.5696.1
Unique NamemRNA_M-pyrifera_M_contig128350.5696.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig128350.5696.1 vs. uniprot
Match: A0A7S4IDK2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IDK2_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 8.040e-8
Identity = 41/141 (29.08%), Postives = 70/141 (49.65%), Query Frame = 1 
Query:    1 PLRPHWMYLPLRIAFSESERLKTAAPDDLEIQASSQAPFVTAGLLFILATVNN---RSLTEEEKAFGTLEVLRVTLLPGQLYMEPTIHSLLTHLRERFSPAPGYSLTFAPLPDSGGLYNLLADAIEEYAASSFGDGLFTSF 414
            PL  +W  LP+++ + E++   + AP        S   F    L+F L  + N    +LT   +     E+ +  LLPG++Y++P ++SLL     RF    G      P+     +++L+ D   EYAA+S G+ LFT++
Sbjct:  628 PLAKNWWLLPVKLWYDEAQAKPSDAP------RRSTVSFFHPVLIFSLLVIQNLPPTALTAINRGNIVAEISKCFLLPGEVYLDPVVNSLL----HRFLVIVGKE----PIVYEQRVFSLMRDVASEYAATSMGEALFTNY 754
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128350.5696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4IDK2_9EUKA8.040e-829.08Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128350contigM-pyrifera_M_contig128350:86..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.664019-UTR-M-pyrifera_M_contig128350:85..1031622815796.664019-UTR-M-pyrifera_M_contig128350:85..103Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128350 86..103 +
1692277573.7753959-UTR-M-pyrifera_M_contig128350:85..1031692277573.7753959-UTR-M-pyrifera_M_contig128350:85..103Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128350 86..103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.675642-CDS-M-pyrifera_M_contig128350:103..4991622815796.675642-CDS-M-pyrifera_M_contig128350:103..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128350 104..499 +
1692277573.7863789-CDS-M-pyrifera_M_contig128350:103..4991692277573.7863789-CDS-M-pyrifera_M_contig128350:103..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128350 104..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128350.5696.1prot_M-pyrifera_M_contig128350.5696.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128350 104..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128350.5696.1

>prot_M-pyrifera_M_contig128350.5696.1 ID=prot_M-pyrifera_M_contig128350.5696.1|Name=mRNA_M-pyrifera_M_contig128350.5696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MYLPLRIAFSESERLKTAAPDDLEIQASSQAPFVTAGLLFILATVNNRSL
TEEEKAFGTLEVLRVTLLPGQLYMEPTIHSLLTHLRERFSPAPGYSLTFA
PLPDSGGLYNLLADAIEEYAASSFGDGLFTSF
back to top

mRNA from alignment at M-pyrifera_M_contig128350:86..499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128350.5696.1 ID=mRNA_M-pyrifera_M_contig128350.5696.1|Name=mRNA_M-pyrifera_M_contig128350.5696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig128350:86..499+ (Macrocystis pyrifera P11B4 male)
CCGCTTCGGCCGCATTGGATGTATCTCCCCCTGAGGATTGCGTTCTCAGA
GAGCGAACGACTGAAGACTGCGGCTCCTGACGACCTGGAGATTCAGGCCT
CTTCTCAAGCCCCCTTTGTCACGGCAGGCCTGCTCTTCATCTTGGCCACG
GTGAACAACCGATCTCTCACGGAAGAAGAGAAGGCTTTTGGCACCCTGGA
GGTGTTGAGAGTTACCCTGCTTCCAGGCCAGCTCTACATGGAGCCAACCA
TTCATTCGCTCCTCACGCACCTGCGCGAGAGGTTCTCCCCTGCTCCTGGG
TACTCGCTCACGTTTGCGCCTCTCCCTGACTCGGGAGGACTGTACAACCT
CCTTGCAGACGCAATAGAGGAGTATGCTGCCAGCAGCTTTGGAGACGGCC
TCTTCACTTCCTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig128350:86..499+

>mRNA_M-pyrifera_M_contig128350.5696.1 ID=mRNA_M-pyrifera_M_contig128350.5696.1|Name=mRNA_M-pyrifera_M_contig128350.5696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig128350:86..499+ (Macrocystis pyrifera P11B4 male)
ATGTATCTCCCCCTGAGGATTGCGTTCTCAGAGAGCGAACGACTGAAGAC
TGCGGCTCCTGACGACCTGGAGATTCAGGCCTCTTCTCAAGCCCCCTTTG
TCACGGCAGGCCTGCTCTTCATCTTGGCCACGGTGAACAACCGATCTCTC
ACGGAAGAAGAGAAGGCTTTTGGCACCCTGGAGGTGTTGAGAGTTACCCT
GCTTCCAGGCCAGCTCTACATGGAGCCAACCATTCATTCGCTCCTCACGC
ACCTGCGCGAGAGGTTCTCCCCTGCTCCTGGGTACTCGCTCACGTTTGCG
CCTCTCCCTGACTCGGGAGGACTGTACAACCTCCTTGCAGACGCAATAGA
GGAGTATGCTGCCAGCAGCTTTGGAGACGGCCTCTTCACTTCCTTCATGT
ATCTCCCCCTGAGGATTGCGTTCTCAGAGAGCGAACGACTGAAGACTGCG
GCTCCTGACGACCTGGAGATTCAGGCCTCTTCTCAAGCCCCCTTTGTCAC
GGCAGGCCTGCTCTTCATCTTGGCCACGGTGAACAACCGATCTCTCACGG
AAGAAGAGAAGGCTTTTGGCACCCTGGAGGTGTTGAGAGTTACCCTGCTT
CCAGGCCAGCTCTACATGGAGCCAACCATTCATTCGCTCCTCACGCACCT
GCGCGAGAGGTTCTCCCCTGCTCCTGGGTACTCGCTCACGTTTGCGCCTC
TCCCTGACTCGGGAGGACTGTACAACCTCCTTGCAGACGCAATAGAGGAG
TATGCTGCCAGCAGCTTTGGAGACGGCCTCTTCACTTCCTTC
back to top