mRNA_M-pyrifera_M_contig128343.5694.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128343.5694.1
Unique NamemRNA_M-pyrifera_M_contig128343.5694.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128343.5694.1 vs. uniprot
Match: A0A7I8VKE1_9ANNE (Glycogen debranching enzyme n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VKE1_9ANNE)

HSP 1 Score: 63.9 bits (154), Expect = 3.670e-9
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:    1 GFTHVTVSSMGC-VVQVVRHNPSTEESVYLFAHTAFEERSRG-SKADHPSVAVAGEFEEELIASVLRVSKS--SYQRHEDLINGMLPTLYWTEPGSKAPARSLYEVKD----GRIHFTRFPPGSVIAFWTSLDAQSAAASKKVR 408
            GF  + V      VV V RHN ++ ES+ L A+TAF++      KA  PS+ ++G+ ++ L    L   +   SY++ E+ ING+     + + G      S+ E+        ++FT+FPPGSVIAF  SL+A+   A  ++R
Sbjct:  623 GFNQIYVDQRDANVVSVTRHNSTSHESIILVAYTAFKQPPHDYPKA--PSMEISGKIQQILYEGRLDKIEGAKSYKKDENFINGLEEYKCFIQEGISPKNSSMVEINSLSDKELVNFTKFPPGSVIAFKVSLNAEPKTAIFQLR 764
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BLAST of mRNA_M-pyrifera_M_contig128343.5694.1 vs. uniprot
Match: R7UWR3_CAPTE (Glycogen debranching enzyme n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UWR3_CAPTE)

HSP 1 Score: 58.9 bits (141), Expect = 2.050e-7
Identity = 44/145 (30.34%), Postives = 67/145 (46.21%), Query Frame = 1 
Query:    1 GFTHVTVSSMGC-VVQVVRHNPSTEESVYLFAHTAFEERSRGSKADHPSVAVAGEFEEELIASVL--RVSKSSYQRHEDLINGMLPTLYWTEPGSKAPARSLYEVKDGR------IHFTRFPPGSVIAFWTSLDAQSAAASKKVR 408
            GF  V V  +    V V RHNP + +SV L A T F   +  +     ++ + G  +E ++   L  R + S + R+ D +NG+   +       K     L E+K         + F  FPPGSVIAF  SL+A + ++   VR
Sbjct:  725 GFNQVFVDQVDSDTVSVTRHNPVSHQSVILVARTVFSTPANMNAPYSQTLQIPGMIDEIILEGTLKPRSNASKFTRNADYLNGLTDVVLSLREHLKVEESDLVELKMNNTSGLQELEFACFPPGSVIAFKVSLNANNKSSILNVR 869
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128343.5694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7I8VKE1_9ANNE3.670e-933.33Glycogen debranching enzyme n=1 Tax=Dimorphilus gy... [more]
R7UWR3_CAPTE2.050e-730.34Glycogen debranching enzyme n=1 Tax=Capitella tele... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128343contigM-pyrifera_M_contig128343:85..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.5542939-UTR-M-pyrifera_M_contig128343:84..1111622815796.5542939-UTR-M-pyrifera_M_contig128343:84..111Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128343 85..111 +
1692277573.7336364-UTR-M-pyrifera_M_contig128343:84..1111692277573.7336364-UTR-M-pyrifera_M_contig128343:84..111Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128343 85..111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.5688157-CDS-M-pyrifera_M_contig128343:111..4951622815796.5688157-CDS-M-pyrifera_M_contig128343:111..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128343 112..495 +
1692277573.7448957-CDS-M-pyrifera_M_contig128343:111..4951692277573.7448957-CDS-M-pyrifera_M_contig128343:111..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128343 112..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128343.5694.1prot_M-pyrifera_M_contig128343.5694.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128343 112..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128343.5694.1

>prot_M-pyrifera_M_contig128343.5694.1 ID=prot_M-pyrifera_M_contig128343.5694.1|Name=mRNA_M-pyrifera_M_contig128343.5694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
MGCVVQVVRHNPSTEESVYLFAHTAFEERSRGSKADHPSVAVAGEFEEEL
IASVLRVSKSSYQRHEDLINGMLPTLYWTEPGSKAPARSLYEVKDGRIHF
TRFPPGSVIAFWTSLDAQSAAASKKVRT
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mRNA from alignment at M-pyrifera_M_contig128343:85..495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128343.5694.1 ID=mRNA_M-pyrifera_M_contig128343.5694.1|Name=mRNA_M-pyrifera_M_contig128343.5694.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig128343:85..495+ (Macrocystis pyrifera P11B4 male)
GGGTTCACGCACGTGACAGTGAGCTCGATGGGGTGCGTGGTCCAGGTGGT
GCGCCACAACCCGAGCACCGAAGAGAGTGTGTATCTCTTCGCACACACGG
CATTTGAAGAGCGGAGCAGAGGATCGAAGGCCGACCACCCAAGCGTGGCG
GTTGCAGGAGAGTTCGAGGAGGAACTCATTGCCTCTGTGTTGCGGGTGTC
GAAGTCTTCTTACCAACGCCACGAGGACCTCATCAATGGCATGCTGCCAA
CCCTCTACTGGACAGAGCCTGGGTCCAAGGCCCCCGCCAGAAGTCTCTAT
GAGGTCAAGGACGGCAGGATTCACTTCACTCGCTTCCCACCAGGCTCAGT
GATTGCGTTCTGGACGTCTCTTGATGCCCAGTCTGCTGCAGCCAGCAAGA
AGGTCAGAACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128343:85..495+

>mRNA_M-pyrifera_M_contig128343.5694.1 ID=mRNA_M-pyrifera_M_contig128343.5694.1|Name=mRNA_M-pyrifera_M_contig128343.5694.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig128343:85..495+ (Macrocystis pyrifera P11B4 male)
ATGGGGTGCGTGGTCCAGGTGGTGCGCCACAACCCGAGCACCGAAGAGAG
TGTGTATCTCTTCGCACACACGGCATTTGAAGAGCGGAGCAGAGGATCGA
AGGCCGACCACCCAAGCGTGGCGGTTGCAGGAGAGTTCGAGGAGGAACTC
ATTGCCTCTGTGTTGCGGGTGTCGAAGTCTTCTTACCAACGCCACGAGGA
CCTCATCAATGGCATGCTGCCAACCCTCTACTGGACAGAGCCTGGGTCCA
AGGCCCCCGCCAGAAGTCTCTATGAGGTCAAGGACGGCAGGATTCACTTC
ACTCGCTTCCCACCAGGCTCAGTGATTGCGTTCTGGACGTCTCTTGATGC
CCAGTCTGCTGCAGCCAGCAAGAAGGTCAGAACTATGGGGTGCGTGGTCC
AGGTGGTGCGCCACAACCCGAGCACCGAAGAGAGTGTGTATCTCTTCGCA
CACACGGCATTTGAAGAGCGGAGCAGAGGATCGAAGGCCGACCACCCAAG
CGTGGCGGTTGCAGGAGAGTTCGAGGAGGAACTCATTGCCTCTGTGTTGC
GGGTGTCGAAGTCTTCTTACCAACGCCACGAGGACCTCATCAATGGCATG
CTGCCAACCCTCTACTGGACAGAGCCTGGGTCCAAGGCCCCCGCCAGAAG
TCTCTATGAGGTCAAGGACGGCAGGATTCACTTCACTCGCTTCCCACCAG
GCTCAGTGATTGCGTTCTGGACGTCTCTTGATGCCCAGTCTGCTGCAGCC
AGCAAGAAGGTCAGAACT
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