mRNA_M-pyrifera_M_contig128332.5691.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128332.5691.1
Unique NamemRNA_M-pyrifera_M_contig128332.5691.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: A0A0P7ZCW4_9BACT (Ribonuclease VapC n=1 Tax=Bacteroidetes bacterium HLUCCA01 TaxID=1666909 RepID=A0A0P7ZCW4_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 9.210e-24
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 3
Query:  177 MFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSYT 392
            M FLDTNICIHFL G   SVRE LL+TPP  +KIPVIV++EL++GA KS RKE NL+K+  FLAPFE++ ++
Sbjct:    1 MLFLDTNICIHFLKGMSASVRERLLATPPSTIKIPVIVEAELLYGAEKSLRKEANLKKVTAFLAPFEVIPFS 72          
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: A0A7Y5T1V7_9BACT (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7Y5T1V7_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 2.000e-23
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  174 IMFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSYTQ 395
            +++FLDTN CI+FLNG+  S+R+ LLST P  VKIP IV++EL+FGAYKS RKEENL K+  FL PFE++S+++
Sbjct:    1 MIYFLDTNTCIYFLNGTSTSIRDKLLSTIPSTVKIPSIVKAELIFGAYKSKRKEENLIKIRTFLEPFEVISFSE 74          
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: A0A3P3XR48_9SPIR (PilT protein domain protein n=1 Tax=uncultured spirochete TaxID=156406 RepID=A0A3P3XR48_9SPIR)

HSP 1 Score: 95.5 bits (236), Expect = 3.100e-22
Identity = 39/73 (53.42%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  177 MFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSYTQ 395
            MF+LDTN CI+FLNG+  S+++ ++ TPP E+ IP +V++EL+FGAYKS RK+EN++K+ +FL PFEI+ + +
Sbjct:    1 MFYLDTNTCIYFLNGTCASIKKKIMETPPSEIAIPSVVKAELLFGAYKSKRKKENIEKIEQFLEPFEIVPFDE 73          
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: A0A8J7S883_9BACT (Ribonuclease VapC n=1 Tax=Natronogracilivirgula saccharolytica TaxID=2812953 RepID=A0A8J7S883_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 1.170e-21
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 3
Query:  177 MFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSYTQ 395
            M+FLDTNICIHFL G   S+R+N+L+T P  +KIPVIV+SEL++G  KS++K+EN +KL  FL+ FE++ Y Q
Sbjct:    1 MYFLDTNICIHFLKGEYDSIRQNILATQPHRIKIPVIVESELMYGVSKSSKKKENRKKLEAFLSAFEVVDYRQ 73          
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: A0A7C4Q1U1_9SPIR (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A7C4Q1U1_9SPIR)

HSP 1 Score: 90.5 bits (223), Expect = 3.170e-20
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  177 MFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSY 389
            M+FLDTN CI+FLNG   S++  LLS  P E+ IP IV++EL +GAYKS +K+ENL+++ RFL PFEI+++
Sbjct:    1 MYFLDTNTCIYFLNGMYPSIKARLLSVAPSEIAIPSIVKAELFYGAYKSKKKDENLERIERFLEPFEIVAF 71          
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: A0A5C8CCJ4_ACISP (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Acinetobacter sp. TaxID=472 RepID=A0A5C8CCJ4_ACISP)

HSP 1 Score: 90.1 bits (222), Expect = 4.030e-20
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  177 MFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSYTQ 395
            M+FLD+N CI+FLNG   SVR+ +L+TPPK +KI  IVQ+EL+ GAYKS  K++ LQK+  FL+ FEI+ +T+
Sbjct:    1 MYFLDSNTCIYFLNGRFESVRDKILNTPPKNIKIASIVQAELLLGAYKSQHKQKTLQKVETFLSAFEIIPFTE 73          
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: A0A7C1DJ42_9DELT (Ribonuclease VapC n=1 Tax=Desulfonatronum sp. TaxID=1963255 RepID=A0A7C1DJ42_9DELT)

HSP 1 Score: 88.2 bits (217), Expect = 2.260e-19
Identity = 37/71 (52.11%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  177 MFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSY 389
            M+FLDTN CI++LNG   S++  +L+ PP ++ IP +V++EL+FGA KS +K+ENL+K+ +FL PFEI S+
Sbjct:    1 MYFLDTNTCIYYLNGKYESIKRKILALPPSKITIPCVVKAELLFGACKSRKKQENLEKIEKFLEPFEITSF 71          
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: A0A7W0EY46_9DELT (Ribonuclease VapC n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7W0EY46_9DELT)

HSP 1 Score: 87.8 bits (216), Expect = 3.540e-19
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = 3
Query:  177 MFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSY 389
            MFFLDTN CI +LNG+  SV+E +L+T P ++KI  +V++EL+FGAYKS +K+ NL+K+A FL PFEI+ +
Sbjct:    1 MFFLDTNTCIFYLNGTSPSVKEKILATSPAQIKICSMVKAELLFGAYKSRQKQSNLEKVAAFLEPFEIIPF 71          
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: A0A5C9D2W9_9SPIR (PilT protein domain-containing protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A5C9D2W9_9SPIR)

HSP 1 Score: 86.3 bits (212), Expect = 1.230e-18
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  177 MFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSY 389
            M++LDTN CI+FLNG+  SV+  +LST P E+ IP IV++EL+F AYKS  K+ N++K+ +FL PFEI+++
Sbjct:    1 MYYLDTNTCIYFLNGNYESVKVKILSTGPNEIAIPSIVKAELLFRAYKSINKKNNIEKIVKFLEPFEIVAF 71          
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Match: F8F185_TRECH (PilT protein domain protein n=1 Tax=Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) TaxID=744872 RepID=F8F185_TRECH)

HSP 1 Score: 84.7 bits (208), Expect = 4.900e-18
Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = 3
Query:  177 MFFLDTNICIHFLNGSVLSVRENLLSTPPKEVKIPVIVQSELVFGAYKSARKEENLQKLARFLAPFEILSY 389
            M++LDTN CI+FLNG+   VR  LLST PKE+ IP IV++EL+ GAYKS ++E N++K+ +FL PF ++ +
Sbjct:    1 MYYLDTNTCIYFLNGTNERVRTKLLSTVPKEIAIPSIVKAELLLGAYKSRKREYNIEKIEQFLEPFTVVPF 71          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128332.5691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0P7ZCW4_9BACT9.210e-2463.89Ribonuclease VapC n=1 Tax=Bacteroidetes bacterium ... [more]
A0A7Y5T1V7_9BACT2.000e-2360.81Type II toxin-antitoxin system VapC family toxin n... [more]
A0A3P3XR48_9SPIR3.100e-2253.42PilT protein domain protein n=1 Tax=uncultured spi... [more]
A0A8J7S883_9BACT1.170e-2157.53Ribonuclease VapC n=1 Tax=Natronogracilivirgula sa... [more]
A0A7C4Q1U1_9SPIR3.170e-2056.34Type II toxin-antitoxin system VapC family toxin n... [more]
A0A5C8CCJ4_ACISP4.030e-2056.16Type II toxin-antitoxin system VapC family toxin n... [more]
A0A7C1DJ42_9DELT2.260e-1952.11Ribonuclease VapC n=1 Tax=Desulfonatronum sp. TaxI... [more]
A0A7W0EY46_9DELT3.540e-1956.34Ribonuclease VapC n=1 Tax=Desulfobacteraceae bacte... [more]
A0A5C9D2W9_9SPIR1.230e-1853.52PilT protein domain-containing protein n=1 Tax=Spi... [more]
F8F185_TRECH4.900e-1853.52PilT protein domain protein n=1 Tax=Treponema cald... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128332contigM-pyrifera_M_contig128332:2..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog744872.Spica_0568
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs29824@1,2J97B@203691,2ZV84@2
Best tax levelSpirochaetes
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.4254355-CDS-M-pyrifera_M_contig128332:1..1781622815796.4254355-CDS-M-pyrifera_M_contig128332:1..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128332 2..178 +
1692277573.6908052-CDS-M-pyrifera_M_contig128332:1..1781692277573.6908052-CDS-M-pyrifera_M_contig128332:1..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128332 2..178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.4376347-UTR-M-pyrifera_M_contig128332:178..4991622815796.4376347-UTR-M-pyrifera_M_contig128332:178..499Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128332 179..499 +
1692277573.7016108-UTR-M-pyrifera_M_contig128332:178..4991692277573.7016108-UTR-M-pyrifera_M_contig128332:178..499Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128332 179..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128332.5691.1prot_M-pyrifera_M_contig128332.5691.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128332 2..178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128332.5691.1

>prot_M-pyrifera_M_contig128332.5691.1 ID=prot_M-pyrifera_M_contig128332.5691.1|Name=mRNA_M-pyrifera_M_contig128332.5691.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
AAEAEQVSISKWVGNQLKNTLNTNYPTNFEELFGSIQDDTFREPEDVSFT
TDANREPL*
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mRNA from alignment at M-pyrifera_M_contig128332:2..499+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128332.5691.1 ID=mRNA_M-pyrifera_M_contig128332.5691.1|Name=mRNA_M-pyrifera_M_contig128332.5691.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig128332:2..499+ (Macrocystis pyrifera P11B4 male)
GCTGCGGAAGCGGAACAAGTATCTATTTCTAAATGGGTGGGTAACCAATT AAAGAATACCCTGAATACGAACTATCCCACAAATTTTGAAGAGCTGTTTG GTTCTATTCAGGATGACACCTTTCGTGAGCCAGAGGATGTTTCTTTTACT ACCGATGCCAACAGGGAACCATTATAATGTTTTTCCTGGATACCAATATT TGCATTCACTTTCTGAACGGGTCGGTGCTCTCAGTACGGGAAAACCTGCT TTCTACTCCACCTAAAGAGGTTAAAATTCCGGTTATCGTTCAATCTGAAT TAGTGTTCGGAGCCTATAAAAGCGCTAGAAAAGAAGAAAACCTTCAAAAA CTGGCTCGCTTTCTGGCCCCCTTTGAAATTTTGAGTTATACCCAACGCCA TGTCAGAACTCTATGCAGAAATCCGTTTTCACACAGAATCAACAGGAACA GTAATCGGGCCTAATGACTTATTAATTGCTACCATTGCTAAAGCACAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128332:2..499+

>mRNA_M-pyrifera_M_contig128332.5691.1 ID=mRNA_M-pyrifera_M_contig128332.5691.1|Name=mRNA_M-pyrifera_M_contig128332.5691.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig128332:2..499+ (Macrocystis pyrifera P11B4 male)
GCTGCGGAAGCGGAACAAGTATCTATTTCTAAATGGGTGGGTAACCAATT
AAAGAATACCCTGAATACGAACTATCCCACAAATTTTGAAGAGCTGTTTG
GTTCTATTCAGGATGACACCTTTCGTGAGCCAGAGGATGTTTCTTTTACT
ACCGATGCCAACAGGGAACCATTATAAGCTGCGGAAGCGGAACAAGTATC
TATTTCTAAATGGGTGGGTAACCAATTAAAGAATACCCTGAATACGAACT
ATCCCACAAATTTTGAAGAGCTGTTTGGTTCTATTCAGGATGACACCTTT
CGTGAGCCAGAGGATGTTTCTTTTACTACCGATGCCAACAGGGAACCATT
ATAA
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