mRNA_M-pyrifera_M_contig12832.5689.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12832.5689.1 vs. uniprot
Match: D7FTU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU6_ECTSI) HSP 1 Score: 252 bits (643), Expect = 1.620e-69 Identity = 171/384 (44.53%), Postives = 204/384 (53.12%), Query Frame = 1
Query: 10 DCSPCDDLSDAEVEELAKYENGGKLVFCDATCLDEDADLTHCNYLDLGQICRSCGDCSTCE----------------------------PCPIPSGTPAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADDEGVDDGDDDEGESEFDCSLCEDLTDAQLEALAAYDNGGKQIVCDPTCLDGVSDPTHCNYFGLGQICRGCGECSTCEPCPVPSGTPAPSPGSTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRDTXXXXXXXXXXXXXXXXXXXXXXXRAGTPSPIVAHES--DFDCSPCEDLTDAQLEALAAYDNGGKQVVCDPTCLDGVSDPMHCNYFDLSQICRGCGECSSCEACP 1071
+CS C +L+D +V LA Y+NGGK V CD +CLD D HCNY LGQICR CG+CS P P+ TPAP+ XXXXXXXXXXX + DD+ +CS+C +LTD Q+ LA+YDNGGKQ+VCDP+CLDGV+DP HCNYFGLGQICRGCGECS CEPCP TPAP S+ T XXXXXXXXX XXXXXXXX + T P+ A + D +CS C +LT+AQ+E+LAAY +GGKQ++CDP C+DG SD HCNYF L QICRGCG+C C CP
Sbjct: 1165 ECSVCSNLTDEQVAVLASYDNGGKQVVCDPSCLDGVTDPLHCNYFGLGQICRGCGECSXXXXXXXXXXXXXXXXXPTMMPDLGFDDLFTPSPVTPETPAPSAKPVMHTPXXXXXXXXXXXVAETPESEVPTPSPTMMPLGADGAVDDD--------------ECSVCSNLTDEQVAVLASYDNGGKQVVCDPSCLDGVTDPLHCNYFGLGQICRGCGECSLCEPCP--GATPAPETTSSPTMVPDLGFDDLFTPSPVTPETPAPSAKP--------VMHTPSXXXXXXXXXTVAEXXXXXXXXXSPTMMPLGADGAVDDDECSVCSNLTEAQMESLAAYPDGGKQIICDPRCVDGSSDIAHCNYFGLGQICRGCGDCDDCTPCP 1524
BLAST of mRNA_M-pyrifera_M_contig12832.5689.1 vs. uniprot
Match: A0A6H5L1V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V0_9PHAE) HSP 1 Score: 169 bits (427), Expect = 5.680e-45 Identity = 118/259 (45.56%), Postives = 138/259 (53.28%), Query Frame = 1
Query: 415 CSLCEDLTDAQLEALAAYDNGGKQIVCDPTCLDGVSDPTHCNYFGLGQICRGCGECSTCE---------------------------PCPVPSGTPAPS-------------------PGSTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRDTXXXXXXXXXXXXXXXXXXXXXXXRAGTPSPIVAHES--DFDCSPCEDLTDAQLEALAAYDNGGKQVVCDPTCLDGVSDPMHCNYFDLSQICRGCGE 1047
CS+C +LTD Q+ LA+YDNGGKQ+VCDPTCLDGV+DP HCNYFGLGQICRGCG+CS P PV TPAPS T A + T XXXXXXXXXXXXXXXXXXXX + T P+ A + D +CS C +LT+AQ+E+LAAY +GGKQV+CDP C+DG SD HCNYF L QICRGCG+
Sbjct: 15 CSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCSXXXXXXXXXXXXXXXXXPTMIPDLGFDLTTPSPVTPETPAPSVKAVKRTPSXXXXXXXXXXXXETPAPKATTPSPTMEPDLGFDLTTPSPVTPETPAPSAKPVKQTPSXXXXXXXXXXXXXXXXXXXXTPSPTMMPLGADGAVDDDECSVCSNLTEAQMESLAAYPDGGKQVICDPRCVDGNSDITHCNYFGLGQICRGCGD 273
BLAST of mRNA_M-pyrifera_M_contig12832.5689.1 vs. uniprot
Match: A0A6H5L314_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L314_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.600e-34 Identity = 131/320 (40.94%), Postives = 151/320 (47.19%), Query Frame = 1
Query: 400 ESEFDCSLCEDLTDAQLEALAAYDNGGKQIVCDPTCLDGVSDPTHCNYFGLGQICRGCGECST--CEPCP-------VPSGTPAP---------SPGSTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRDTXXXXXXXXXXXXXXXXXXXXXXXRAG------------------------------------------------------------------------------TPSPIV------AHESDFDCSPCEDLTDAQLEALAAYDNGGKQVVCDPTCLDGVSDPMHCNYFDLSQICRGCGECS 1053
E ++DCS+C +++ EAL D G KQIVCDP C+ +D HCNYFGLGQICRGCGEC C+PCP VP+ +PAP SP + E XXXXXXXXXX X XXXXXX D XXXXXXXXXXXXXXX R TPSP + D +CS C +LTD Q+ LA+YDNGGKQVVCDPTCLDGV+DP+HCNYF L QICRGCG+CS
Sbjct: 168 EDQYDCSVCSEVSSEDAEALVNDDKGVKQIVCDPACVGEATDVLHCNYFGLGQICRGCGECDDGWCQPCPDATPWPVVPTPSPAPLGFDSLSTPSPITPETPAPVKSXXXXXXXXXXPXTVAETPAPKAXXXXXXVVPDPTSDPXXXXXXXXXXXXXXXKAVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGFDLXXXXXXXXXXXXXSAKPVKQTPSXXXXXXXXXXXXXXXXXXXXTPSPTMMPLGADGAVDDDECSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCS 487
BLAST of mRNA_M-pyrifera_M_contig12832.5689.1 vs. uniprot
Match: A0A6H5KTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW1_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.810e-19 Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 1
Query: 418 SLCEDLTDAQLEALAAYDNGGKQIVCDPTCLDGVSDPTHCNYFGLGQICRGCGECSTCEPCP 603
++C D++ AQ EALA YD GGK IVCDPTCL G D +HCNYFGLGQ+CRGCG CS C PCP
Sbjct: 318 AMCADISPAQEEALAMYDGGGKVIVCDPTCLGG--DISHCNYFGLGQLCRGCGSCSECVPCP 377
BLAST of mRNA_M-pyrifera_M_contig12832.5689.1 vs. uniprot
Match: D7G4W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W7_ECTSI) HSP 1 Score: 100 bits (249), Expect = 3.040e-19 Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1
Query: 403 SEFDCSLCEDLTDAQLEALAAYDNGGKQIVCDPTCLDGVSDPTHCNYFGLGQICRGCGECSTCEPCP 603
+E + ++C D++ AQ EALA YD GGK IVCDPTCL D +HCNYFGLGQ+CRGCG CS C+PCP
Sbjct: 348 TEAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLG--EDISHCNYFGLGQLCRGCGSCSGCDPCP 412
BLAST of mRNA_M-pyrifera_M_contig12832.5689.1 vs. uniprot
Match: D8LI25_ECTSI (Mucin 17-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI25_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 7.520e-15 Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 382 GDDDEGESEFDCSLCEDLTDAQLEALAAYDNGGKQIVCDPTCLDGVSDPTHCNYFGLGQICRGCGECSTCEPC 600
GD + ++ DC+ C +L++ Q+ ALAA+ G K++VCD CLDGV D C+YFGLGQICRGCG+C CE C
Sbjct: 1169 GDGADADTTSDCAACSNLSEVQMLALAAHPGGAKRVVCDSDCLDGV-DVLDCDYFGLGQICRGCGDCDGCEAC 1240
BLAST of mRNA_M-pyrifera_M_contig12832.5689.1 vs. uniprot
Match: A0A6H5KP86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP86_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 5.360e-9 Identity = 84/242 (34.71%), Postives = 110/242 (45.45%), Query Frame = 1
Query: 844 TPSPIVAH---ESDFDCSPCEDLTDAQLEALAAYDNGGKQVVC----DPTCLDGVSDPMHCNYFDLSQ-------------ICRGCGECSSCEACPVPSG-TPAPAPELTDAXXXVPTPSDGXXXXXSVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAPT---GTPSXXXXXXXXXXXXXXXSSEFDCSACEDLTDGQIEALAKYDNDGGKAIVCDPTCLDGVSDPLHCNCE 1497
TP+P + E ++DC+ C L++AQ+EALA+YDNGGK+V+C D T + RG ++ E V T APAP ++ A TP++ S PA +APT G XXXXXXXXXXXXXXX + DC AC +L++ Q+ ALA Y G K +VCDP CLDGV D L C+CE
Sbjct: 478 TPAPTPSDGGDEDEYDCAACSSLSNAQVEALASYDNGGKRVICRGCGDCTXXXXXXXXXXXXXXXXXXXXXXXXXXGFAPFVTRGTVSPTANETVAVEENVTYAPAPHVS-AAYGTGTPAETDFADLSTPAPVNP-------------------------------MAPTADAGVDXXXXXXXXXXXXXXXXXTTSDCEACSNLSEVQMLALAAYPG-GAKRVVCDPDCLDGV-DILDCDCE 685 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12832.5689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12832.5689.1 >prot_M-pyrifera_M_contig12832.5689.1 ID=prot_M-pyrifera_M_contig12832.5689.1|Name=mRNA_M-pyrifera_M_contig12832.5689.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=505bp EEFDCSPCDDLSDAEVEELAKYENGGKLVFCDATCLDEDADLTHCNYLDLback to top mRNA from alignment at M-pyrifera_M_contig12832:784..4259- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12832.5689.1 ID=mRNA_M-pyrifera_M_contig12832.5689.1|Name=mRNA_M-pyrifera_M_contig12832.5689.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3476bp|location=Sequence derived from alignment at M-pyrifera_M_contig12832:784..4259- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12832:784..4259- >mRNA_M-pyrifera_M_contig12832.5689.1 ID=mRNA_M-pyrifera_M_contig12832.5689.1|Name=mRNA_M-pyrifera_M_contig12832.5689.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3030bp|location=Sequence derived from alignment at M-pyrifera_M_contig12832:784..4259- (Macrocystis pyrifera P11B4 male)back to top |