mRNA_M-pyrifera_M_contig1283.5688.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: D7FLU6_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU6_ECTSI) HSP 1 Score: 355 bits (910), Expect = 8.590e-121 Identity = 193/257 (75.10%), Postives = 223/257 (86.77%), Query Frame = 1
Query: 1 STSPLRSS---PADAAIDAYPSDVSTEDGTGAAAPPAGVTDESSF-MANEVLQTISAGVGESYIPYSETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVGLGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVFEREA 759
S SPLRSS PADA +DA+PSDVS + ++ PPA F +ANE+LQT+ +GVGE YIPYSE DKSAIE+LVVELE+S +GT+VQFPRDL KLDGRWRLVFTNNLVGLG+LSP+ L+DVYQVVDS++ LV+N VYA MSPPLF+ETWGRLG+RAA++A+TVEDR+TFPV+F IQH+F VSSQSKPAQIELVQKELKLMNAEDA KRSLALPAL+PLAKAAAGRFDTT+L Q VRVSRGRFGELRVF+REA
Sbjct: 42 SASPLRSSSSSPADA-VDAFPSDVSPD--ASSSTPPA----SGGFSLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVGLGRLSPVELRDVYQVVDSAAGLVSNVVYATMSPPLFSETWGRLGERAAEIARTVEDRVTFPVNFNIQHNFEVSSQSKPAQIELVQKELKLMNAEDAAKRSLALPALQPLAKAAAGRFDTTYLDQDVRVSRGRFGELRVFQREA 291
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A836CAZ2_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ2_9STRA) HSP 1 Score: 197 bits (502), Expect = 4.440e-59 Identity = 97/206 (47.09%), Postives = 145/206 (70.39%), Query Frame = 1
Query: 139 VLQTISAGVGESYIPYSETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVGLGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLG-QRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVFER 753
+L I +GVG+ Y S + I+ +V+LE+SG + V+FP D LDGRW+L++++N+ G+G+LSP+ L +VYQVVD++ + + N VYA +SPPLF TWGR Q A+ AK V +RI+FPVDF + H F ++S PAQ+++ KE K++N E +RSLA+PA++PLA+ AG+FDTT++ +R+SRG GE+RVF+R
Sbjct: 64 LLSAIGSGVGKGYYMTSRSAAKDIKKAIVDLETSGADMA-VKFPSDFATLDGRWKLLYSSNIFGVGRLSPLTLDEVYQVVDTAGNSIKNVVYATLSPPLFETTWGRFPVQAVANAAKRVNERISFPVDFALDHTFEITSAEYPAQLKIALKETKIVNCEKPEQRSLAVPAIRPLAQIGAGKFDTTYMDDDLRISRGTLGEIRVFQR 268
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A9SHV7_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SHV7_PHYPA) HSP 1 Score: 63.5 bits (153), Expect = 1.310e-8 Identity = 67/222 (30.18%), Postives = 99/222 (44.59%), Query Frame = 1
Query: 142 LQTISAGVGESYIPYSETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVG-----------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPL-------AKAAAGRFDTTFLSQGVRVSRGRFGELRVFER 753
+Q+I AG+ + + D++A + +LE++G+ V+ PRDL+ L GRWRLVFT+ +G+L P+ L VYQ +D +S + N V + P W VE V T+ H F V+S S +I + +K G L PL + + G FDTT+L R+SRG GELR+F R
Sbjct: 5 MQSIIAGLDRGLLATA-NDETAADAAARKLEAAGDA---VELPRDLDLLQGRWRLVFTSGFATGSLGGERPGPPVGRLLPLTLGQVYQRIDVASKELDNIVDLRVGTP-----WP---------LPPVE------VTATLAHTFEVTS-SNSIRIVFDKTTVK----PTGGLSQLPSFDTPPLPEFLRQPSNSRGGSFDTTYLDSDFRISRGDRGELRIFVR 197
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A2K1JV15_PHYPA (PAP_fibrillin domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JV15_PHYPA) HSP 1 Score: 61.6 bits (148), Expect = 1.640e-7 Identity = 69/229 (30.13%), Postives = 101/229 (44.10%), Query Frame = 1
Query: 121 SFMANEVLQTISAGVGESYIPYSETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVG-----------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPL-------AKAAAGRFDTTFLSQGVRVSRGRFGELRVFER 753
S + E+L I AG+ + + D++A + +LE++G+ V+ PRDL+ L GRWRLVFT+ +G+L P+ L VYQ +D +S + N V + P W VE V T+ H F V+S S +I + +K G L PL + + G FDTT+L R+SRG GELR+F R
Sbjct: 88 SSLKTELLSII-AGLDRGLLATA-NDETAADAAARKLEAAGDA---VELPRDLDLLQGRWRLVFTSGFATGSLGGERPGPPVGRLLPLTLGQVYQRIDVASKELDNIVDLRVGTP-----WP---------LPPVE------VTATLAHTFEVTS-SNSIRIVFDKTTVK----PTGGLSQLPSFDTPPLPEFLRQPSNSRGGSFDTTYLDSDFRISRGDRGELRIFVR 286
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A8J5KSX0_ZINOF (PAP_fibrillin domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KSX0_ZINOF) HSP 1 Score: 57.4 bits (137), Expect = 4.180e-6 Identity = 64/204 (31.37%), Postives = 96/204 (47.06%), Query Frame = 1
Query: 187 SETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTN-----NLVG------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMS-----PPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALP-ALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
SE D E ELES G GT V DLEKL GRW+L+F++ L G +G+L P+ L V+Q +D + N V + PP+ E L + ++ T +ITF V+ TI+ S S+ Q+E+ + LP +L+P + +G F+ T++ + R++RG GELRVF
Sbjct: 91 SEEDLRRAEAAAKELESIG--GT-VDLTIDLEKLQGRWKLIFSSAFSSRTLGGSRPGPPIGRLIPLTLGQVFQRIDIFNKDFDNIVELQLGTPWPLPPI--EATATLAHKL-EIIGTSNIKITF-VNTTIK---PTGSYSQLPQLEIPR-----------------LPDSLRPPSNTRSGEFEVTYVDRDTRITRGDKGELRVF 267
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A835ENR3_9POAL (PAP_fibrillin domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835ENR3_9POAL) HSP 1 Score: 55.8 bits (133), Expect = 2.190e-5 Identity = 60/196 (30.61%), Postives = 86/196 (43.88%), Query Frame = 1
Query: 187 SETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVG----LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMS-----PPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
SE D S + ELE++ G V RDL+KL GRWRLV+++ G+L PI L V+Q +D S N V + PPL + A LA E T V + TV ++ +Q+ L++ D L+P + +G F+ T+L R++RG GELRVF
Sbjct: 238 SEEDLSRADAAARELEAAAG-GEPVDLERDLDKLQGRWRLVYSSAFSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAPWPLPPL---------EVTATLAHKFEIVGTSGVKINFEKT-TVKTKGSLSQL----PPLEVPRIPD---------NLRPPSNTGSGEFEVTYLDGDTRITRGDRGELRVF 409
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: Q5QJA2_MAIZE (Harpin binding protein 1 n=4 Tax=Andropogoneae TaxID=147429 RepID=Q5QJA2_MAIZE) HSP 1 Score: 55.1 bits (131), Expect = 2.600e-5 Identity = 59/190 (31.05%), Postives = 84/190 (44.21%), Query Frame = 1
Query: 226 ELESSGEEGTDVQFPRDLEKLDGRWRLV----FTNNLVG-------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMS-----PPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
ELE++ G V RDL+KL GRWRL+ F++ +G G+L PI L V+Q +D S N V + PPL A A LA E T + T + TV ++ +Q+ L++ D L+P + +G F+ T+L RV+RG GELRVF
Sbjct: 105 ELEAAA--GCPVDLSRDLDKLQGRWRLLYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAPWPLPPLEA---------TATLAHKFEIIGTSGIKITFEKT-TVKTKGNLSQL----PPLEVPRIPD---------NLRPPSNTGSGEFEVTYLDDDTRVTRGDRGELRVF 269
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: UPI001F5DA53E (plastid-lipid-associated protein 6, chloroplastic n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DA53E) HSP 1 Score: 54.7 bits (130), Expect = 3.490e-5 Identity = 58/181 (32.04%), Postives = 76/181 (41.99%), Query Frame = 1
Query: 259 VQFPRDLEKLDGRWRLV----FTNNLVG-------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRA-ADLAKTVEDRITFPVDFTIQHD-FTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALK-----PLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
V +DL+KL GRWRLV F++ +G G+L PI L V+Q +D S N V + P W A A LA E IT I D TV ++ AQ+ L L +P L P + +G F+ T+L RV+RG GELRVF
Sbjct: 112 VDLAKDLDKLQGRWRLVYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVVSEDFDNIVELELGAP-----WPLPPVEATATLAHKFE--ITGTASIKINFDKTTVKTKGNLAQLPL-----------------LEVPRLPDNLRPPTSNTGSGEFEVTYLDDDTRVTRGDRGELRVF 268
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A1E5W0X6_9POAL (Putative plastid-lipid-associated protein 6, chloroplastic n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5W0X6_9POAL) HSP 1 Score: 54.7 bits (130), Expect = 3.650e-5 Identity = 58/186 (31.18%), Postives = 84/186 (45.16%), Query Frame = 1
Query: 226 ELESSGEEGTDVQFPRDLEKLDGRWRLV----FTNNLVG-------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRA-ADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
ELE++G G V +DL+KL GRWRLV F++ +G G+L PI L V+Q +D S N V + P W A A LA + T + T + TV ++ +Q+ L++ D L+P + +G F+ T+L RV+RG GELRVF
Sbjct: 111 ELEAAGGGGP-VDLSKDLDKLQGRWRLVYSSGFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAP-----WPLPPVEAVATLAHKFDIIGTSGIKITFEKT-TVKTKGNLSQL----PPLEVPRIPD---------NLRPPSNTGSGEFEVTYLDDDTRVTRGDKGELRVF 276
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A6L5BD47_APIGR (PAP_fibrillin domain-containing protein n=2 Tax=Apioideae TaxID=241778 RepID=A0A6L5BD47_APIGR) HSP 1 Score: 54.3 bits (129), Expect = 4.690e-5 Identity = 58/203 (28.57%), Postives = 88/203 (43.35%), Query Frame = 1
Query: 187 SETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLV----FTNNLVG-------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGK-RSLALP----ALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
SE D + E+E E G V DL+KL GRW+L+ F++ +G G+L PI L V+Q +D S N V + P W VE V T+ H F ++ S ++++ ++ + + + L +P AL+P +G FD T+L VR++RG GELRVF
Sbjct: 91 SENDLQKADAAAKEIE---EAGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDILSKDFDNIVELELGAP-----WP---------LPPVE------VTATLAHKFELTGSSS---VKIIFEKTTVKTTGNLSQIPPLEIPQLPDALRPSTNRGSGDFDVTYLDSDVRITRGDRGELRVF 267 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1283.5688.1 >prot_M-pyrifera_M_contig1283.5688.1 ID=prot_M-pyrifera_M_contig1283.5688.1|Name=mRNA_M-pyrifera_M_contig1283.5688.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp STSPLRSSPADAAIDAYPSDVSTEDGTGAAAPPAGVTDESSFMANEVLQTback to top mRNA from alignment at M-pyrifera_M_contig1283:21467..25266- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1283.5688.1 ID=mRNA_M-pyrifera_M_contig1283.5688.1|Name=mRNA_M-pyrifera_M_contig1283.5688.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3800bp|location=Sequence derived from alignment at M-pyrifera_M_contig1283:21467..25266- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1283:21467..25266- >mRNA_M-pyrifera_M_contig1283.5688.1 ID=mRNA_M-pyrifera_M_contig1283.5688.1|Name=mRNA_M-pyrifera_M_contig1283.5688.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig1283:21467..25266- (Macrocystis pyrifera P11B4 male)back to top |