mRNA_M-pyrifera_M_contig128261.5687.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128261.5687.1
Unique NamemRNA_M-pyrifera_M_contig128261.5687.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128261.5687.1 vs. uniprot
Match: A0A1R2APA9_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2APA9_9CILI)

HSP 1 Score: 55.1 bits (131), Expect = 9.120e-7
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 FHNVRPRTRAERQRQVDKEGLEKGRLAARKGAYHVYSDPGKLVAPDDASAAAFVAESDRFVTDVVGEERLRRE 219
            +HN++PRTR ER+   D+E  EK RL  R G YH Y +   +  PD  S+  ++ E++RF  D    E+ RRE
Sbjct:    6 YHNIKPRTRKEREGMRDREATEKMRLKERTGGYHQYEEFMGISRPDQ-SSNMYIPEAERFDKDFAAIEKKRRE 77
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BLAST of mRNA_M-pyrifera_M_contig128261.5687.1 vs. uniprot
Match: A0A7S4ECF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECF0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.000e-6
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:    1 FHNVRPRTRAERQRQVDKEGLEKGRLAARKG-AYHVYSDPGK-----LVAPDDASAAAFVAESDRFVTDVVGEERLRRE 219
            F N++P+TR ER    DK  LEK RL  R G A  +Y +        LV P    AA F+A+SDRF TDV GE++LRR+
Sbjct:   33 FRNIKPKTRQERAALRDKVALEKDRLMKRTGLAAKMYRENAPDTSDGLVVPRP-DAAGFMADSDRFHTDVAGEDKLRRD 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128261.5687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1R2APA9_9CILI9.120e-741.10Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A7S4ECF0_9STRA3.000e-646.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128261contigM-pyrifera_M_contig128261:4..354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002360.1
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.1573002-CDS-M-pyrifera_M_contig128261:3..3541622815796.1573002-CDS-M-pyrifera_M_contig128261:3..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128261 4..354 -
1692277573.5599244-CDS-M-pyrifera_M_contig128261:3..3541692277573.5599244-CDS-M-pyrifera_M_contig128261:3..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128261 4..354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128261.5687.1prot_M-pyrifera_M_contig128261.5687.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128261 4..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128261.5687.1

>prot_M-pyrifera_M_contig128261.5687.1 ID=prot_M-pyrifera_M_contig128261.5687.1|Name=mRNA_M-pyrifera_M_contig128261.5687.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
FHNVRPRTRAERQRQVDKEGLEKGRLAARKGAYHVYSDPGKLVAPDDASA
AAFVAESDRFVTDVVGEERLRREELAARRAAAVIRRREEAAQREEERWQR
MEEEKKAEEERLAKLRA
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mRNA from alignment at M-pyrifera_M_contig128261:4..354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128261.5687.1 ID=mRNA_M-pyrifera_M_contig128261.5687.1|Name=mRNA_M-pyrifera_M_contig128261.5687.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig128261:4..354- (Macrocystis pyrifera P11B4 male)
TTTCACAACGTTCGTCCACGGACGCGTGCAGAGCGACAGCGACAAGTGGA
CAAGGAAGGGTTGGAGAAAGGGAGGCTGGCAGCGAGAAAAGGGGCCTATC
ATGTGTACAGCGACCCTGGGAAGCTGGTGGCGCCGGACGATGCGAGCGCA
GCTGCCTTTGTGGCAGAATCTGACCGGTTTGTGACGGATGTGGTTGGAGA
AGAACGATTACGTCGGGAAGAGCTCGCTGCTCGACGTGCAGCTGCTGTGA
TTCGGAGACGGGAAGAAGCTGCACAACGGGAAGAAGAGCGGTGGCAGAGG
ATGGAGGAGGAAAAGAAGGCAGAAGAGGAGCGATTGGCGAAACTACGAGC
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128261:4..354-

>mRNA_M-pyrifera_M_contig128261.5687.1 ID=mRNA_M-pyrifera_M_contig128261.5687.1|Name=mRNA_M-pyrifera_M_contig128261.5687.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig128261:4..354- (Macrocystis pyrifera P11B4 male)
TTTCACAACGTTCGTCCACGGACGCGTGCAGAGCGACAGCGACAAGTGGA
CAAGGAAGGGTTGGAGAAAGGGAGGCTGGCAGCGAGAAAAGGGGCCTATC
ATGTGTACAGCGACCCTGGGAAGCTGGTGGCGCCGGACGATGCGAGCGCA
GCTGCCTTTGTGGCAGAATCTGACCGGTTTGTGACGGATGTGGTTGGAGA
AGAACGATTACGTCGGGAAGAGCTCGCTGCTCGACGTGCAGCTGCTGTGA
TTCGGAGACGGGAAGAAGCTGCACAACGGGAAGAAGAGCGGTGGCAGAGG
ATGGAGGAGGAAAAGAAGGCAGAAGAGGAGCGATTGGCGAAACTACGAGC
GTTTCACAACGTTCGTCCACGGACGCGTGCAGAGCGACAGCGACAAGTGG
ACAAGGAAGGGTTGGAGAAAGGGAGGCTGGCAGCGAGAAAAGGGGCCTAT
CATGTGTACAGCGACCCTGGGAAGCTGGTGGCGCCGGACGATGCGAGCGC
AGCTGCCTTTGTGGCAGAATCTGACCGGTTTGTGACGGATGTGGTTGGAG
AAGAACGATTACGTCGGGAAGAGCTCGCTGCTCGACGTGCAGCTGCTGTG
ATTCGGAGACGGGAAGAAGCTGCACAACGGGAAGAAGAGCGGTGGCAGAG
GATGGAGGAGGAAAAGAAGGCAGAAGAGGAGCGATTGGCGAAACTACGAG
CG
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