mRNA_M-pyrifera_M_contig128247.5682.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128247.5682.1
Unique NamemRNA_M-pyrifera_M_contig128247.5682.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: A0A1Q2M3X6_9GAMM (Uncharacterized protein n=3 Tax=Microbulbifer agarilyticus TaxID=260552 RepID=A0A1Q2M3X6_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 4.170e-9
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   16 LFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGMLVAFSLSTPTGIAIGTLLSDSL 273
            L L L+VHS +AGLA+G  STL     +F+AI+ HK+ A FALG S+ R   +       +RG++  F++ TP GI IG L++D+L
Sbjct:  127 LLLTLSVHSLLAGLAMGAQSTLSNFAVVFLAIIAHKVCAGFALGASLHRIGMARHR----ARGLVAGFAIMTPLGIIIGALITDAL 208          
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: A0A2J6IES3_9BACT (Uncharacterized protein n=1 Tax=Marinilabiliales bacterium TaxID=2053303 RepID=A0A2J6IES3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 5.300e-8
Identity = 35/85 (41.18%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   13 VLFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGMLVAFSLSTPTGIAIGTLLSD 267
            +LFL L +HS +AG++LG+ ST+   L +F+AI+ HK  A+FALG ++V +  + S+ +      ++ FS+ TP GI IGT+L++
Sbjct:  119 ILFLVLAIHSIIAGMSLGLESTIISGLVIFIAIIAHKGSASFALGVNLVNSKINKSLIIKT----IIFFSIMTPLGIIIGTVLNN 199          
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: A0A2J6I4C8_9BACT (Uncharacterized protein n=1 Tax=Marinilabiliales bacterium TaxID=2053303 RepID=A0A2J6I4C8_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.350e-7
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   13 VLFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGMLVAFSLSTPTGIAIGTLLSD 267
            +LFL L +HS +AG++LG+ STL   L +F+AI+ HK  A+FALG ++V +  + S+ +      +V FS+ TP GI IG++L  
Sbjct:  113 ILFLVLAIHSIIAGMSLGLESTLISGLVIFIAIIAHKGSASFALGVNLVSSKANKSLIIKT----IVFFSIMTPIGIIIGSVLDS 193          
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: A0A0D2G7G0_9DELT (Iron permease n=1 Tax=Dethiosulfatarculus sandiegensis TaxID=1429043 RepID=A0A0D2G7G0_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 1.840e-7
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    4 SAGVLFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGMLVAFSLSTPTGIAIGTLLSDSLN 276
            SA  L L L++HS VAG ALGV S     L L +AIL HK  AAFAL  ++VRA     +P   + GMLV FS+STP G+  G L   +LN
Sbjct:  108 SAYTLMLVLSIHSFVAGAALGVESGAVSSLALLLAILAHKGSAAFALTVALVRAR----LPRPKTWGMLVLFSVSTPLGVTAGILGGLALN 194          
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: UPI000255BBE7 (ZIP family metal transporter n=1 Tax=Microbulbifer agarilyticus TaxID=260552 RepID=UPI000255BBE7)

HSP 1 Score: 56.6 bits (135), Expect = 2.020e-7
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   16 LFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGMLVAFSLSTPTGIAIGTLLSDSL 273
            L L L+VHS +AGLA+G  ++L     +F+AI+ HK+ A FALG S+ R   + S  V    G++  F++ TP GI  G L++D+L
Sbjct:  127 LLLTLSVHSLLAGLAMGAQTSLSNFTVVFLAIIAHKVCAGFALGASLHRIGMAHSRAV----GLVAGFAIMTPLGIVSGALITDAL 208          
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: UPI000719C080 (zinc transporter ZIP1-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C080)

HSP 1 Score: 56.6 bits (135), Expect = 2.640e-7
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   13 VLFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGMLVAFSLSTPTGIAIGTLLSD 267
            +L LAL+VHS   GLA+G+ ST E VLD+F A++ HK + AF+LG +++++  S    +       V FS+++P GIAIG  ++D
Sbjct:  277 ILVLALSVHSVFEGLAVGLQSTAESVLDIFTALILHKCVLAFSLGLNLIQSDLSMFGTIRSD----VVFSVTSPIGIAIGMGITD 357          
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: UPI001BAC2FF0 (ZIP family metal transporter n=1 Tax=Mycobacterium spongiae TaxID=886343 RepID=UPI001BAC2FF0)

HSP 1 Score: 56.2 bits (134), Expect = 2.850e-7
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   16 LFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGMLVAFSLSTPTGIAIGTLLSDSLN 276
            L L L+VHS +AG+ALG   ++ G + +F+AIL HK    FALG S+ R   + S     +R ++  FS+ TP GI +GT +S  L+
Sbjct:  132 LLLTLSVHSIIAGMALGAQKSVAGFVAIFIAILAHKSAGGFALGVSLHRVGTNFSR----ARALVTGFSIMTPLGIMLGTGISALLD 214          
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: A0A524MFW6_9BACT (ZIP family metal transporter n=1 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A524MFW6_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.040e-7
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   13 VLFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGMLVAFSLSTPTGIAIGTLLSDSL 273
            VL + L++HS +AG ALG  +T+  V+ +F+A + HKL AAFALG S+VR+   A    L  R +L+ F+L TP GI +G  +S  +
Sbjct:  117 VLTIVLSLHSIIAGYALGAGATMNMVMIIFLAEVSHKLSAAFALGVSLVRSGMDA----LHLRRVLLLFALMTPFGILLGEFVSSRI 199          
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: A0A8J1XSQ0_OWEFU (Ofus.G072702 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XSQ0_OWEFU)

HSP 1 Score: 55.5 bits (132), Expect = 6.460e-7
Identity = 34/87 (39.08%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   16 LFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGML---VAFSLSTPTGIAIGTLLSD 267
            L +AL++HS   GLA+G+  T +  L +F+A++ HK + AF+LG +++++        L + G++   +AFSL++PTGIAIG L+ D
Sbjct:  198 LIMALSIHSIFEGLAVGLQPTAQATLQIFIALILHKCVLAFSLGMNLMQSK-------LTTWGVIRSNLAFSLASPTGIAIGMLIID 277          
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Match: A0A7S1PFQ3_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1PFQ3_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 6.750e-7
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 VSAGVLFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGRSVVRASNSASIPVLVSRGML----VAFSLSTPTGIAIGTLLSDS 270
            VS  VL+++L  HS + GL LG+       + L VAIL HKL AA++LG  VV +S  +    + + G+L    V FS+ TP+GIA+G LLSDS
Sbjct:  291 VSCFVLWVSLVSHSFIEGLGLGLQQDAHHFMSLLVAILSHKLFAAYSLG--VVLSSTLSHSRSIFTYGVLGFLIVTFSVVTPSGIAVGILLSDS 382          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128247.5682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q2M3X6_9GAMM4.170e-944.19Uncharacterized protein n=3 Tax=Microbulbifer agar... [more]
A0A2J6IES3_9BACT5.300e-841.18Uncharacterized protein n=1 Tax=Marinilabiliales b... [more]
A0A2J6I4C8_9BACT1.350e-742.35Uncharacterized protein n=1 Tax=Marinilabiliales b... [more]
A0A0D2G7G0_9DELT1.840e-749.45Iron permease n=1 Tax=Dethiosulfatarculus sandiege... [more]
UPI000255BBE72.020e-741.86ZIP family metal transporter n=1 Tax=Microbulbifer... [more]
UPI000719C0802.640e-742.35zinc transporter ZIP1-like n=1 Tax=Priapulus cauda... [more]
UPI001BAC2FF02.850e-741.38ZIP family metal transporter n=1 Tax=Mycobacterium... [more]
A0A524MFW6_9BACT5.040e-743.68ZIP family metal transporter n=1 Tax=Candidatus At... [more]
A0A8J1XSQ0_OWEFU6.460e-739.08Ofus.G072702 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A7S1PFQ3_9EUKA6.750e-744.68Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128247contigM-pyrifera_M_contig128247:225..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.88834-CDS-M-pyrifera_M_contig128247:224..5001622815795.88834-CDS-M-pyrifera_M_contig128247:224..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128247 225..500 +
1692277573.464235-CDS-M-pyrifera_M_contig128247:224..5001692277573.464235-CDS-M-pyrifera_M_contig128247:224..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128247 225..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128247.5682.1prot_M-pyrifera_M_contig128247.5682.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128247 225..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128247.5682.1

>prot_M-pyrifera_M_contig128247.5682.1 ID=prot_M-pyrifera_M_contig128247.5682.1|Name=mRNA_M-pyrifera_M_contig128247.5682.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
VSAGVLFLALTVHSAVAGLALGVTSTLEGVLDLFVAILCHKLLAAFALGR
SVVRASNSASIPVLVSRGMLVAFSLSTPTGIAIGTLLSDSLN
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mRNA from alignment at M-pyrifera_M_contig128247:225..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128247.5682.1 ID=mRNA_M-pyrifera_M_contig128247.5682.1|Name=mRNA_M-pyrifera_M_contig128247.5682.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig128247:225..500+ (Macrocystis pyrifera P11B4 male)
GTGAGTGCTGGGGTGTTGTTTCTGGCGTTAACGGTGCATTCTGCGGTTGC TGGGTTGGCTCTTGGGGTGACTTCTACACTGGAAGGGGTGTTGGATTTGT TCGTTGCCATTTTGTGCCACAAACTCTTGGCGGCATTTGCGTTGGGACGT TCAGTGGTTCGAGCCTCAAACTCCGCCTCCATCCCAGTGCTCGTGTCCAG AGGGATGCTCGTGGCCTTCTCCCTCTCCACCCCCACCGGTATCGCCATAG GAACCCTCCTCTCCGACTCACTCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128247:225..500+

>mRNA_M-pyrifera_M_contig128247.5682.1 ID=mRNA_M-pyrifera_M_contig128247.5682.1|Name=mRNA_M-pyrifera_M_contig128247.5682.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig128247:225..500+ (Macrocystis pyrifera P11B4 male)
GTGAGTGCTGGGGTGTTGTTTCTGGCGTTAACGGTGCATTCTGCGGTTGC
TGGGTTGGCTCTTGGGGTGACTTCTACACTGGAAGGGGTGTTGGATTTGT
TCGTTGCCATTTTGTGCCACAAACTCTTGGCGGCATTTGCGTTGGGACGT
TCAGTGGTTCGAGCCTCAAACTCCGCCTCCATCCCAGTGCTCGTGTCCAG
AGGGATGCTCGTGGCCTTCTCCCTCTCCACCCCCACCGGTATCGCCATAG
GAACCCTCCTCTCCGACTCACTCAACGTGAGTGCTGGGGTGTTGTTTCTG
GCGTTAACGGTGCATTCTGCGGTTGCTGGGTTGGCTCTTGGGGTGACTTC
TACACTGGAAGGGGTGTTGGATTTGTTCGTTGCCATTTTGTGCCACAAAC
TCTTGGCGGCATTTGCGTTGGGACGTTCAGTGGTTCGAGCCTCAAACTCC
GCCTCCATCCCAGTGCTCGTGTCCAGAGGGATGCTCGTGGCCTTCTCCCT
CTCCACCCCCACCGGTATCGCCATAGGAACCCTCCTCTCCGACTCACTCA
AC
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