mRNA_M-pyrifera_M_contig128226.5677.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128226.5677.1
Unique NamemRNA_M-pyrifera_M_contig128226.5677.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A0A2E7KKS8_9PLAN (Thioesterase n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKS8_9PLAN)

HSP 1 Score: 271 bits (693), Expect = 8.590e-92
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 1
Query:    1 EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIRELSD 414
            EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEG CLFPEE VWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIRELSD
Sbjct:   15 EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGTCLFPEEPVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIRELSD 152          
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A0A518A863_9PLAN (Thioesterase (YiiD_Cterm) n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A863_9PLAN)

HSP 1 Score: 210 bits (534), Expect = 1.470e-67
Identity = 105/138 (76.09%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIRELSD 414
            +HIPITRAMQL+V+PPE ++L LTARL PNLNHQETAFGGSIAS+GILAGWTLIHLRL S +RR++IVI KSEI+F RPIEADF G CL P E  WE FL  L+RKGRARIEL PQV VNGK AATIKG FV R LSD
Sbjct:   15 QHIPITRAMQLQVLPPEAEKLSLTARLAPNLNHQETAFGGSIASIGILAGWTLIHLRLRSDQRRHQIVIQKSEIDFLRPIEADFSGECLLPTESDWEPFLTCLERKGRARIELQPQVTVNGKTAATIKGLFVARVLSD 152          
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A0A517RH95_9PLAN (Thioesterase (YiiD_Cterm) n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RH95_9PLAN)

HSP 1 Score: 184 bits (468), Expect = 1.590e-57
Identity = 90/136 (66.18%), Postives = 108/136 (79.41%), Query Frame = 1
Query:    1 EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIREL 408
            +HIP+TRAMQ++V+P   D L+L+ARL PNLNHQETAFGGSIASLGILAGWT IHLRL +   RYKIVI KSE+EF RPIE+DF G C FP++ +WE F + LQRKGRARIEL   V ++G+VAA I G FV + L
Sbjct:   14 QHIPVTRAMQIQVLPEAKDILKLSARLAPNLNHQETAFGGSIASLGILAGWTFIHLRLRADGHRYKIVIQKSEMEFLRPIESDFLGECPFPDDQLWEQFYSGLQRKGRARIELQSHVTLHGEVAAVINGTFVAKRL 149          
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A0A517VVU0_9PLAN (Thioesterase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VVU0_9PLAN)

HSP 1 Score: 182 bits (462), Expect = 1.300e-56
Identity = 90/136 (66.18%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    1 EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIREL 408
            +HIP+T+AMQ+ V+P   D LRL ARL PNLNHQETAFGGSIASLGILAGWTLIH+RL +   RYKIVI KSE+EF  PIE+DFE  C FPE+ +W+ F + LQRKGRARI+L   V VN +VAA IKG FV ++L
Sbjct:   14 QHIPVTKAMQINVLPEMKDALRLNARLAPNLNHQETAFGGSIASLGILAGWTLIHIRLSADNVRYKIVIQKSEMEFLHPIESDFEAECHFPEQKLWDQFHSGLQRKGRARIKLECAVTVNQRVAAVIKGTFVAKQL 149          
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A0A518IE74_9PLAN (Thioesterase n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IE74_9PLAN)

HSP 1 Score: 181 bits (460), Expect = 2.710e-56
Identity = 89/136 (65.44%), Postives = 108/136 (79.41%), Query Frame = 1
Query:    1 EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIREL 408
            +HIP+TRAMQ++V+P   D L+L+A+L PNLNHQETAFGGSIASLGILAGWTLIHLRL S   RYKIVI KSE+EF +PIE+DF G C FP+  +WE F + LQRKGRAR+EL  +V  + +VAA IKG FV + L
Sbjct:   15 QHIPVTRAMQIQVLPESKDALKLSAKLGPNLNHQETAFGGSIASLGILAGWTLIHLRLRSDGCRYKIVIQKSEMEFLKPIESDFLGECPFPDGQIWEQFYSGLQRKGRARVELQSRVTRDDEVAAVIKGTFVAKRL 150          
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A0A355GL62_9PLAN (Thioesterase n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GL62_9PLAN)

HSP 1 Score: 171 bits (434), Expect = 2.220e-52
Identity = 87/136 (63.97%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    1 EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIREL 408
            +HIP+TRAMQ  V+P     L+L+A+L PNLNHQETAFGGSIASLGILAGWTLIHLRL +  ++YKIVI KSEIEF RPIE+DF   C  P++ VW  F  SLQRK R RI L   V VNG++AA IKG FV + L
Sbjct:   15 QHIPVTRAMQFSVLPVSEGALKLSAKLTPNLNHQETAFGGSIASLGILAGWTLIHLRLRADLQKYKIVIQKSEIEFLRPIESDFTAECPVPDDRVWSLFHDSLQRKQRGRIALESTVKVNGQIAAVIKGIFVAKVL 150          
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A6C3M5_9PLAN (Thioesterase, putative n=7 Tax=Planctomycetaceae TaxID=126 RepID=A6C3M5_9PLAN)

HSP 1 Score: 168 bits (426), Expect = 4.700e-51
Identity = 88/136 (64.71%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIREL 408
            +HIP+TRAMQ  V+P     L+L+A+L PNLNHQETAFGGSIASLGILAGWTLIHL+L   +  YKIVI KSEIEF +PIEADF   C  P E VW  F ASLQRK R RI L   V VNG++AA IKG FV + L
Sbjct:   23 QHIPVTRAMQFSVLPVTDGSLKLSAKLVPNLNHQETAFGGSIASLGILAGWTLIHLKLRVDQPNYKIVIQKSEIEFLKPIEADFIAECPLPGEGVWTPFHASLQRKRRGRITLESTVKVNGQIAAVIKGIFVAKLL 158          
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A0A7X7SJD9_9BACT (Thioesterase n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A7X7SJD9_9BACT)

HSP 1 Score: 122 bits (305), Expect = 7.770e-33
Identity = 58/131 (44.27%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    4 HIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFV 396
            HIP+++AM + V+    + + L A L+PNLNH+ TAFGGS+ASL +LAGW+L+ L L S +   +IVI +S + +  PIEADF+  C  P++  W+ FL + +R+GR R+E++  V V G+ AA +   FV
Sbjct:   13 HIPVSQAMGITVLSASLETIVLRAALEPNLNHRSTAFGGSVASLAVLAGWSLLRLGLDSFKPTPQIVIQRSTMNYTLPIEADFDAVCHRPDDAAWQRFLRAFERRGRGRLEVDVDVRVEGRSAAHLHAGFV 143          
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A0A534CEF4_9GAMM (DUF4442 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534CEF4_9GAMM)

HSP 1 Score: 118 bits (296), Expect = 2.250e-31
Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    1 EHIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFV 396
            E+IP++ AM + V     +R++L+A L PN+NH ET FGGS A+L  LA WTL+HLRL  +    ++VI +S +E++RPI  DFE  C F +E  W  F A+L+R+ RAR+ L   +   G   A+ +G+FV
Sbjct:   16 EYIPLSAAMGVRVESATVERVQLSAPLAPNVNHNETVFGGSAAALATLAAWTLLHLRLEQAGCDARLVIQRSSMEYERPIPGDFEAICRFCDEAAWGRFRATLERRARARLRLTAYLAREGHRVASFEGDFV 147          
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Match: A0A2D6SRD7_9PLAN (Thioesterase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SRD7_9PLAN)

HSP 1 Score: 114 bits (285), Expect = 8.740e-30
Identity = 63/133 (47.37%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    4 HIPITRAMQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRLHSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGRARIELNPQVMVNGKVAATIKGNFVIR 402
            HIPIT  M +  +  +   +RL A L+PNLNHQ TAFGGSIAS+G+LA W L+ +RLH      ++VI  S I+F RP    F+G  + P E  WE  +  LQRKGR RIEL  +V   GK  A  +G +V R
Sbjct:   15 HIPITAQMGVRAVTADELLVRLEAPLEPNLNHQWTAFGGSIASIGVLACWCLVQVRLHVRGIDAQLVIRNSTIDFIRPALGPFQGTAVAPAEDTWEHLVDMLQRKGRGRIELCSEVTCAGKTVAGHRGVYVAR 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128226.5677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KKS8_9PLAN8.590e-9298.55Thioesterase n=6 Tax=Gimesia TaxID=1649453 RepID=A... [more]
A0A518A863_9PLAN1.470e-6776.09Thioesterase (YiiD_Cterm) n=3 Tax=Gimesia panareen... [more]
A0A517RH95_9PLAN1.590e-5766.18Thioesterase (YiiD_Cterm) n=1 Tax=Gimesia alba Tax... [more]
A0A517VVU0_9PLAN1.300e-5666.18Thioesterase n=2 Tax=Gimesia aquarii TaxID=2527964... [more]
A0A518IE74_9PLAN2.710e-5665.44Thioesterase n=1 Tax=Gimesia fumaroli TaxID=252797... [more]
A0A355GL62_9PLAN2.220e-5263.97Thioesterase n=2 Tax=Planctomycetaceae TaxID=126 R... [more]
A6C3M5_9PLAN4.700e-5164.71Thioesterase, putative n=7 Tax=Planctomycetaceae T... [more]
A0A7X7SJD9_9BACT7.770e-3344.27Thioesterase n=1 Tax=Candidatus Cloacimonetes bact... [more]
A0A534CEF4_9GAMM2.250e-3143.94DUF4442 domain-containing protein n=1 Tax=Gammapro... [more]
A0A2D6SRD7_9PLAN8.740e-3047.37Thioesterase n=1 Tax=Planctomycetaceae bacterium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128226contigM-pyrifera_M_contig128226:3..422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score156.4
Seed ortholog evalue9.4e-36
Seed eggNOG ortholog344747.PM8797T_26670
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiolester hydrolase activity
EggNOG OGsCOG2050@1,COG2050@2
COG Functional cat.Q
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size420
Cds size396
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.7123904-UTR-M-pyrifera_M_contig128226:2..261622815795.7123904-UTR-M-pyrifera_M_contig128226:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128226 3..26 +
1692277573.3958173-UTR-M-pyrifera_M_contig128226:2..261692277573.3958173-UTR-M-pyrifera_M_contig128226:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128226 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.7239614-CDS-M-pyrifera_M_contig128226:26..4221622815795.7239614-CDS-M-pyrifera_M_contig128226:26..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128226 27..422 +
1692277573.406266-CDS-M-pyrifera_M_contig128226:26..4221692277573.406266-CDS-M-pyrifera_M_contig128226:26..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128226 27..422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128226.5677.1prot_M-pyrifera_M_contig128226.5677.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128226 27..422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128226.5677.1

>prot_M-pyrifera_M_contig128226.5677.1 ID=prot_M-pyrifera_M_contig128226.5677.1|Name=mRNA_M-pyrifera_M_contig128226.5677.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MQLEVMPPEPDRLRLTARLKPNLNHQETAFGGSIASLGILAGWTLIHLRL
HSSERRYKIVIHKSEIEFQRPIEADFEGACLFPEELVWETFLASLQRKGR
ARIELNPQVMVNGKVAATIKGNFVIRELSDV*
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mRNA from alignment at M-pyrifera_M_contig128226:3..422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128226.5677.1 ID=mRNA_M-pyrifera_M_contig128226.5677.1|Name=mRNA_M-pyrifera_M_contig128226.5677.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig128226:3..422+ (Macrocystis pyrifera P11B4 male)
GAGCATATTCCAATCACCCGCGCCATGCAGCTGGAAGTCATGCCTCCTGA ACCGGATCGCCTGCGACTAACGGCCCGGTTGAAGCCGAACCTGAATCACC AGGAGACCGCCTTTGGAGGCAGCATCGCCAGTCTCGGAATCCTGGCCGGC TGGACGCTGATTCATCTGCGTCTGCATAGTTCTGAACGCAGATATAAAAT CGTGATTCACAAAAGTGAAATCGAGTTCCAGCGCCCCATCGAAGCCGACT TTGAAGGGGCATGCCTGTTCCCGGAGGAGCTTGTATGGGAAACATTCCTG GCGTCTCTGCAACGGAAAGGCAGAGCCCGGATAGAACTTAACCCCCAGGT AATGGTCAACGGCAAGGTTGCCGCGACCATTAAGGGGAACTTCGTTATTC GGGAATTGTCAGACGTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128226:3..422+

>mRNA_M-pyrifera_M_contig128226.5677.1 ID=mRNA_M-pyrifera_M_contig128226.5677.1|Name=mRNA_M-pyrifera_M_contig128226.5677.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig128226:3..422+ (Macrocystis pyrifera P11B4 male)
ATGCAGCTGGAAGTCATGCCTCCTGAACCGGATCGCCTGCGACTAACGGC
CCGGTTGAAGCCGAACCTGAATCACCAGGAGACCGCCTTTGGAGGCAGCA
TCGCCAGTCTCGGAATCCTGGCCGGCTGGACGCTGATTCATCTGCGTCTG
CATAGTTCTGAACGCAGATATAAAATCGTGATTCACAAAAGTGAAATCGA
GTTCCAGCGCCCCATCGAAGCCGACTTTGAAGGGGCATGCCTGTTCCCGG
AGGAGCTTGTATGGGAAACATTCCTGGCGTCTCTGCAACGGAAAGGCAGA
GCCCGGATAGAACTTAACCCCCAGGTAATGGTCAACGGCAAGGTTGCCGC
GACCATTAAGGGGAACTTCGTTATTCGGGAATTGTCAGACGTCTGAATGC
AGCTGGAAGTCATGCCTCCTGAACCGGATCGCCTGCGACTAACGGCCCGG
TTGAAGCCGAACCTGAATCACCAGGAGACCGCCTTTGGAGGCAGCATCGC
CAGTCTCGGAATCCTGGCCGGCTGGACGCTGATTCATCTGCGTCTGCATA
GTTCTGAACGCAGATATAAAATCGTGATTCACAAAAGTGAAATCGAGTTC
CAGCGCCCCATCGAAGCCGACTTTGAAGGGGCATGCCTGTTCCCGGAGGA
GCTTGTATGGGAAACATTCCTGGCGTCTCTGCAACGGAAAGGCAGAGCCC
GGATAGAACTTAACCCCCAGGTAATGGTCAACGGCAAGGTTGCCGCGACC
ATTAAGGGGAACTTCGTTATTCGGGAATTGTCAGACGTCTGA
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