mRNA_M-pyrifera_M_contig128222.5675.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128222.5675.1
Unique NamemRNA_M-pyrifera_M_contig128222.5675.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A2D7RZF8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7RZF8_9ACTN)

HSP 1 Score: 196 bits (499), Expect = 2.400e-59
Identity = 102/160 (63.75%), Postives = 121/160 (75.62%), Query Frame = 1
Query:    1 DERTEGAFRFQDGDEPPEEAARTGGPPVADDALTVGLTDPVSVAAGSGAEAERIVDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTVTAGPCAQPVGRTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            ++R  GA +F D DE  + AA  GGPPVA+ AL+  L+DPVSV AG G  A+R+  AP+  FP+  G+I ASLFQYA SGHV  VGP GFTD ACLR SVVT ELRPLDTVT GPC + +GR A+VGC+G +AILL LDIP GEV LPEGGTGFA+A+RL
Sbjct:  126 EDRXRGALQFADTDETADVAAIEGGPPVAEPALSTTLSDPVSVLAGGGPVADRVTSAPVVRFPYPPGSIGASLFQYANSGHVALVGPAGFTDDACLRVSVVTDELRPLDTVTHGPCVETIGRDATVGCIGXTAILLALDIPXGEVALPEGGTGFADAIRL 285          
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A358A3L2_9ACTN (Uncharacterized protein (Fragment) n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A3L2_9ACTN)

HSP 1 Score: 187 bits (474), Expect = 6.440e-55
Identity = 99/160 (61.88%), Postives = 115/160 (71.88%), Query Frame = 1
Query:    1 DERTEGAFRFQDGDEPPEEAARTGGPPVADDALTVGLTDPVSVAAGSGAEAERIVDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTVTAGPCAQPVGRTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            ++RT GA +F D   P   AA  GG PVA+ AL+  L+DPVSV AG G  A+R+  AP   FP+  G+I ASLFQYA SGHV  VGP GFTD ACLR SVVT  LRPLDTVT GPC + +GR A+VGC G +AILL LDIP GEV LPEGG GFA+A+RL
Sbjct:  188 EDRTRGALQFADTGGPAGVAAVEGGSPVAEPALSTALSDPVSVLAGDGPVADRVTSAPFVRFPYPPGSIGASLFQYANSGHVALVGPAGFTDDACLRVSVVTEGLRPLDTVTYGPCVETIGRDATVGCTGDTAILLALDIPTGEVALPEGGAGFADAIRL 347          
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A2E0SYC4_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0SYC4_9ACTN)

HSP 1 Score: 173 bits (438), Expect = 4.530e-52
Identity = 87/129 (67.44%), Postives = 99/129 (76.74%), Query Frame = 1
Query:   94 ALTVGLTDPVSVAAGSGAEAERIVDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTVTAGPCAQPVGRTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            AL+  L+DPVSV AG G  A R+  AP   FP+  G+I ASLFQYA SGHV  VGP GFTD ACLR SVVT ELRPLDTVT GPC + +GR A+VGC+G +AILL LDIP GEV LPEGGTGFA+A+RL
Sbjct:    3 ALSTALSDPVSVLAGDGPVAGRVTSAPFVRFPYPPGSIGASLFQYANSGHVALVGPAGFTDDACLRVSVVTEELRPLDTVTHGPCVETIGRDATVGCIGDTAILLALDIPTGEVALPEGGTGFADAIRL 131          
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A7K1Z7I9_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z7I9_9ACTN)

HSP 1 Score: 177 bits (448), Expect = 1.890e-51
Identity = 87/142 (61.27%), Postives = 111/142 (78.17%), Query Frame = 1
Query:   55 EAARTGGPPVADDALTVGLTDPVSVAAGSGAEAERIVDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTVTAGPCAQPVGRTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            EAA  GGPPV + +L   L++ V+V AG    A+R +DAP   FP+  G++ A+LFQYAGSGHV+FVGP GF D +CLRASVVT +LRPLD VT+GPC +PVGRTA+VGC+G +A+LLDL +P G V LPEGG+GFA+AVR+
Sbjct:  169 EAALVGGPPVVETSLIATLSETVAVLAGDAPLAQRDMDAPPGSFPYPAGSVSATLFQYAGSGHVLFVGPSGFVDDSCLRASVVTQDLRPLDVVTSGPCVEPVGRTATVGCVGPTAVLLDLKVPTGVVELPEGGSGFADAVRV 310          
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A3M2GVK3_ACTSX (Uncharacterized protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GVK3_ACTSX)

HSP 1 Score: 149 bits (377), Expect = 3.860e-42
Identity = 90/163 (55.21%), Postives = 105/163 (64.42%), Query Frame = 1
Query:    7 RTEGAFRFQDGDEPPEEAAR-----TGGPPVADDALTVGLTDPVSVAAGSGAEAERIVDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTVTAGPCAQPVGRTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            RTEG  RF      P  AA       GG PVA   LT  +  PV+VAAG G   ER+VDAP        GA+ ASLF Y G G V  VGP G+T  AC+RASVVT +LRPLDTVT GPCA+P+GR A+V C G  A++L + IPAG V LPEGGTGFA+AVR+
Sbjct:   21 RTEGRLRFA-----PVAAAGGPEVVAGGAPVAVAELTTPVATPVAVAAGDGPPEERLVDAPFADHDPAPGAVWASLFAYDGVGQVALVGPAGWTGDACIRASVVTDDLRPLDTVTHGPCAEPLGRPATVTCEGDDALVLAVAIPAGAVDLPEGGTGFADAVRV 178          
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A2D6KJ85_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6KJ85_9ACTN)

HSP 1 Score: 121 bits (303), Expect = 1.370e-29
Identity = 81/170 (47.65%), Postives = 107/170 (62.94%), Query Frame = 1
Query:    4 ERTEGAFRFQDGDEPP-----EEAARTGGPPVADDALTVGLTDPVSVAAGSGAEAERIV-DAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTVT-AGP-CAQPVG---RTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            +RT+ + RF   +EP      E    +GGPPVA+ ALT     P+++  G    AERI+   P  V P  RGA+ A++F++ G G V  VGP+G+ ++AC+R SVVT  LRPLDTV   GP  A P G   RTASV CLG++ I+L + IP GEV L EGG+G+AEAVR 
Sbjct:  203 DRTDRSLRFATVEEPDDVDSAEAGTVSGGPPVAEPALTAVADRPIAIRRGEEPLAERIMLRVPDPVLPVPRGALAAAVFEHVG-GQVALVGPDGWVESACIRVSVVTDRLRPLDTVIYEGPDAACPTGLSGRTASVTCLGSAGIVLAIRIPQGEVALVEGGSGWAEAVRF 371          
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A2E9W255_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E9W255_9ACTN)

HSP 1 Score: 117 bits (293), Expect = 3.700e-28
Identity = 81/170 (47.65%), Postives = 102/170 (60.00%), Query Frame = 1
Query:    4 ERTEGAFRFQDGDEP-----PEEAARTGGPPVADDALTVGLTDPVSVAAGSGAEAERI-VDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTVT-AGP-CAQPVG---RTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            +R + + RF   DE       E    +GGPPVA  ALT     PV++  G     ERI V  P +  P  RG + A++F++ G G V  VGP+G+ D+AC+R SVVT  LRPLDTV   GP  A P G   RTASV CLG++ I+L + IP GEV L EGGTG+AEAVR 
Sbjct:  203 DRIDRSLRFSSADEAVDTDSDEVGPVSGGPPVAAPALTAVADRPVAILRGDEPLVERIMVRVPDSALPVPRGLLTAAVFEHIG-GQVALVGPDGWVDSACIRVSVVTDRLRPLDTVLYEGPDAACPAGLSGRTASVTCLGSAGIVLAIQIPQGEVALIEGGTGWAEAVRF 371          
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A2E6XS35_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E6XS35_9ACTN)

HSP 1 Score: 116 bits (291), Expect = 7.160e-28
Identity = 81/170 (47.65%), Postives = 106/170 (62.35%), Query Frame = 1
Query:    4 ERTEGAFRFQDGDEP----PEEAART-GGPPVADDALTVGLTDPVSVAAGSGAEAERI-VDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTVT-AGP-CAQPVG---RTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            +RT+ + RF   +EP    P+   R  GG PVA+  LT     PV++  G    AERI V  P +  P  RGA+ A++F++ G G V  VGP+G+ ++AC+R SVVT  LRPLDTV   GP  A P G   R A+V CLG++ I+L + IP GEVTL EGGTG+AEAVR 
Sbjct:  203 DRTDRSLRFSAVEEPVDGDPDVVDRVPGGLPVAEPVLTAVADRPVAILRGEEPLAERIMVRVPDSALPVPRGALTAAVFEHTG-GQVALVGPDGWVESACIRVSVVTDRLRPLDTVLYQGPDAACPTGLTGRLAAVTCLGSAGIVLAIQIPQGEVTLVEGGTGWAEAVRF 371          
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A355QGE4_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A355QGE4_9ACTN)

HSP 1 Score: 112 bits (279), Expect = 3.490e-26
Identity = 70/148 (47.30%), Postives = 91/148 (61.49%), Query Frame = 1
Query:   55 EAARTGGPPVADDALTVGLTDPVSVAAGSGAEAERI-VDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTVTAGPC--AQPV---GRTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            +A  TGGPPVA+  L VGL   V+VA G GA  +RI +     + P   G + AS+F++ G G V  VGP G+ + AC+RASVVT  LRPLD V  G    A PV   GR A   C G  A++L++DIP GEV L EGG G++E +R+
Sbjct:  227 DAPLTGGPPVAEPLLVVGLDHLVAVAVGEGAVEDRIRLSVDEGILPVPAGGVAASVFEHRG-GQVALVGPGGWVEAACVRASVVTEVLRPLDVVLFGSSQGACPVALEGRPAVATCRGTDALILEIDIPQGEVDLVEGGIGWSEGIRI 373          
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Match: A0A538D6W7_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D6W7_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 2.530e-21
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:   79 PVADDALTVGLTDPVSVAAGSGAEAERI-VDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASVVTAELRPLDTV--TAGPCAQPV---GRTASVGCLGASAILLDLDIPAGEVTLPEGGTGFAEAVRL 480
            P+ +  L   L  PV+V AG+G   +RI  +  + + P    A+ A+LF+Y G G VV VGP GF  TACL+ S VT  LRP DT    AG  A P    GR A+VGC+G +AI+ ++  P G+V L EGG      VR+
Sbjct:  206 PLVNPNLLARLERPVAVLAGAGNAVDRIDPNVSIELLPSAPAALSATLFRYGGRGQVVIVGPAGFLTTACLQVSAVTVNLRPFDTAIYNAGATACPANVAGRPATVGCVGDTAIMFEVQFPQGDVALDEGGVAAVGGVRV 345          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128222.5675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A2D7RZF8_9ACTN2.400e-5963.75Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A358A3L2_9ACTN6.440e-5561.88Uncharacterized protein (Fragment) n=6 Tax=Acidimi... [more]
A0A2E0SYC4_9ACTN4.530e-5267.44Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7K1Z7I9_9ACTN1.890e-5161.27Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A3M2GVK3_ACTSX3.860e-4255.21Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A2D6KJ85_9ACTN1.370e-2947.65Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E9W255_9ACTN3.700e-2847.65Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A2E6XS35_9ACTN7.160e-2847.65Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A355QGE4_9ACTN3.490e-2647.30Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A538D6W7_9ACTN2.530e-2142.86Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128222contigM-pyrifera_M_contig128222:3..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.63669-CDS-M-pyrifera_M_contig128222:2..4821622815795.63669-CDS-M-pyrifera_M_contig128222:2..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128222 3..482 -
1692277573.3674507-CDS-M-pyrifera_M_contig128222:2..4821692277573.3674507-CDS-M-pyrifera_M_contig128222:2..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128222 3..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128222.5675.1prot_M-pyrifera_M_contig128222.5675.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128222 3..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128222.5675.1

>prot_M-pyrifera_M_contig128222.5675.1 ID=prot_M-pyrifera_M_contig128222.5675.1|Name=mRNA_M-pyrifera_M_contig128222.5675.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
DERTEGAFRFQDGDEPPEEAARTGGPPVADDALTVGLTDPVSVAAGSGAE
AERIVDAPLTVFPFDRGAIQASLFQYAGSGHVVFVGPEGFTDTACLRASV
VTAELRPLDTVTAGPCAQPVGRTASVGCLGASAILLDLDIPAGEVTLPEG
GTGFAEAVRL
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mRNA from alignment at M-pyrifera_M_contig128222:3..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128222.5675.1 ID=mRNA_M-pyrifera_M_contig128222.5675.1|Name=mRNA_M-pyrifera_M_contig128222.5675.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig128222:3..482- (Macrocystis pyrifera P11B4 male)
GACGAGCGAACCGAGGGGGCATTCCGTTTCCAGGATGGCGACGAGCCACC CGAAGAGGCCGCCCGCACCGGCGGCCCACCAGTCGCCGACGACGCGCTCA CCGTCGGGCTCACCGACCCGGTCTCCGTGGCGGCTGGGTCCGGAGCAGAA GCGGAGCGGATCGTCGACGCGCCGCTCACCGTCTTCCCGTTCGACCGAGG TGCCATCCAGGCGTCGCTGTTCCAGTACGCCGGCTCGGGTCATGTGGTGT TCGTCGGCCCCGAAGGGTTCACCGACACCGCGTGTCTGCGGGCCAGCGTG GTCACCGCCGAGCTGCGGCCCCTCGACACGGTCACCGCCGGCCCGTGTGC CCAGCCGGTCGGACGGACCGCAAGCGTGGGCTGCCTGGGAGCGAGCGCGA TCCTGCTCGACCTCGACATCCCGGCCGGCGAGGTCACCCTGCCCGAAGGC GGCACGGGGTTTGCCGAAGCAGTCCGCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128222:3..482-

>mRNA_M-pyrifera_M_contig128222.5675.1 ID=mRNA_M-pyrifera_M_contig128222.5675.1|Name=mRNA_M-pyrifera_M_contig128222.5675.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig128222:3..482- (Macrocystis pyrifera P11B4 male)
GACGAGCGAACCGAGGGGGCATTCCGTTTCCAGGATGGCGACGAGCCACC
CGAAGAGGCCGCCCGCACCGGCGGCCCACCAGTCGCCGACGACGCGCTCA
CCGTCGGGCTCACCGACCCGGTCTCCGTGGCGGCTGGGTCCGGAGCAGAA
GCGGAGCGGATCGTCGACGCGCCGCTCACCGTCTTCCCGTTCGACCGAGG
TGCCATCCAGGCGTCGCTGTTCCAGTACGCCGGCTCGGGTCATGTGGTGT
TCGTCGGCCCCGAAGGGTTCACCGACACCGCGTGTCTGCGGGCCAGCGTG
GTCACCGCCGAGCTGCGGCCCCTCGACACGGTCACCGCCGGCCCGTGTGC
CCAGCCGGTCGGACGGACCGCAAGCGTGGGCTGCCTGGGAGCGAGCGCGA
TCCTGCTCGACCTCGACATCCCGGCCGGCGAGGTCACCCTGCCCGAAGGC
GGCACGGGGTTTGCCGAAGCAGTCCGCCTCGACGAGCGAACCGAGGGGGC
ATTCCGTTTCCAGGATGGCGACGAGCCACCCGAAGAGGCCGCCCGCACCG
GCGGCCCACCAGTCGCCGACGACGCGCTCACCGTCGGGCTCACCGACCCG
GTCTCCGTGGCGGCTGGGTCCGGAGCAGAAGCGGAGCGGATCGTCGACGC
GCCGCTCACCGTCTTCCCGTTCGACCGAGGTGCCATCCAGGCGTCGCTGT
TCCAGTACGCCGGCTCGGGTCATGTGGTGTTCGTCGGCCCCGAAGGGTTC
ACCGACACCGCGTGTCTGCGGGCCAGCGTGGTCACCGCCGAGCTGCGGCC
CCTCGACACGGTCACCGCCGGCCCGTGTGCCCAGCCGGTCGGACGGACCG
CAAGCGTGGGCTGCCTGGGAGCGAGCGCGATCCTGCTCGACCTCGACATC
CCGGCCGGCGAGGTCACCCTGCCCGAAGGCGGCACGGGGTTTGCCGAAGC
AGTCCGCCTC
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