mRNA_M-pyrifera_M_contig128202.5669.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128202.5669.1
Unique NamemRNA_M-pyrifera_M_contig128202.5669.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: A0A482UPF0_9ARCH (Peptidase_M14 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UPF0_9ARCH)

HSP 1 Score: 153 bits (386), Expect = 4.630e-41
Identity = 75/121 (61.98%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSRRPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRP 363
             R+ LC S+ GNPVPLLTITDF+S P                ++ RP ++LS RVHPGETN SWMLRGV+D LTSS+P+A  LR RV+ KV+P LNPDGVINGHHRTNLAG DLNR WT P
Sbjct:  218 HRTNLCHSVAGNPVPLLTITDFTSPPAA--------------VACRPYVLLSGRVHPGETNGSWMLRGVIDFLTSSAPVAAELRKRVIFKVVPFLNPDGVINGHHRTNLAGFDLNRHWTTP 324
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BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: A0A7S3LLF3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLF3_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.940e-34
Identity = 66/129 (51.16%), Postives = 95/129 (73.64%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSS--------SWVPLSRRPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRP 363
            ++SLLC +LGGN  PL+TIT+FS +   +  +    S         S++P+S+R  +V+++RVHPGETNASWM+RG+L  LTS S  A +LR+ V+ K++PMLNPDGVI G++R NLAG+DLNR+W++P
Sbjct:  174 KKSLLCKTLGGNDCPLITITNFSETKAVNIREEEPCSETNLFDDDLSFLPVSQRRYVVITSRVHPGETNASWMMRGLLKFLTSDSAEAFSLRNHVIFKIVPMLNPDGVIVGNYRCNLAGVDLNRKWSKP 302
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BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: A0A8M1KK75_CLUHA (cytosolic carboxypeptidase 1 isoform X3 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KK75_CLUHA)

HSP 1 Score: 132 bits (332), Expect = 2.290e-33
Identity = 69/123 (56.10%), Postives = 87/123 (70.73%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSRRPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRPTP 369
            +  +LC +LGGNP PLLTIT    S       A+TT  +   L  RPV+ L+ RVHPGETNASW+++G L+ LT SSP+A +LR+  + KVIPMLNPDGVING+HR +L+G DLNRQW  P P
Sbjct:  828 REDVLCETLGGNPCPLLTITAMPDS-------ANTTHINQ--LRSRPVVFLTGRVHPGETNASWVMKGTLEFLTGSSPLAQSLRACFLFKVIPMLNPDGVINGNHRCSLSGEDLNRQWQHPIP 941
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BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: A0A6P8FUQ3_CLUHA (Tubulin-glutamate carboxypeptidase n=5 Tax=Clupeidae TaxID=55118 RepID=A0A6P8FUQ3_CLUHA)

HSP 1 Score: 132 bits (332), Expect = 2.290e-33
Identity = 69/123 (56.10%), Postives = 87/123 (70.73%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSRRPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRPTP 369
            +  +LC +LGGNP PLLTIT    S       A+TT  +   L  RPV+ L+ RVHPGETNASW+++G L+ LT SSP+A +LR+  + KVIPMLNPDGVING+HR +L+G DLNRQW  P P
Sbjct:  828 REDVLCETLGGNPCPLLTITAMPDS-------ANTTHINQ--LRSRPVVFLTGRVHPGETNASWVMKGTLEFLTGSSPLAQSLRACFLFKVIPMLNPDGVINGNHRCSLSGEDLNRQWQHPIP 941
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BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: A0A835YMV6_9STRA (Peptidase_M14 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 6.920e-33
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSRRPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRP 363
            +R+ LC +L GN VPL+T+T          +           L+RRP +VL+ARVHPGE+NASW++ G+L  LT + P A ALR R V KVIPMLNPDGVING+HR +LAG DLNR+W  P
Sbjct:  127 RRTTLCRTLAGNDVPLVTVT----------AXXXXXXXXXXXLARRPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAP 237
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BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: UPI001FAC4679 (cytosolic carboxypeptidase 1 isoform X1 n=5 Tax=Cyprinodontoidei TaxID=8087 RepID=UPI001FAC4679)

HSP 1 Score: 130 bits (328), Expect = 7.950e-33
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSRRPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRPTP 369
            ++ +LC +LGGN  PLLTIT     P + +SD             RP+I LSARVHPGETNASW+++G L+ L  SSP+AV+LR   + K++PMLNPDGVING+HR +L+G DLNRQW  P P
Sbjct:  890 RQDVLCETLGGNTCPLLTITAM---PESKSSDH------ICQFRNRPLIFLSARVHPGETNASWVMKGTLEFLMGSSPLAVSLREAYIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQNPNP 1003
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BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: A0A8C9RJ74_SCLFO (Tubulin-glutamate carboxypeptidase n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RJ74_SCLFO)

HSP 1 Score: 130 bits (326), Expect = 1.470e-32
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSRRPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRPTP 369
            ++ +LC +LGGN  PLLTIT     P +S++D             RP + L+ARVHPGETNASW+++G L+ L S SP+A +LR   V K++PMLNPDGVING+HR +L+G DLNRQW RP+P
Sbjct:  786 RQDVLCETLGGNSCPLLTITAM---PQSSSNDQ------ICQFKNRPYVFLTARVHPGETNASWVMKGTLEFLMSPSPMAQSLRESYVFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQRPSP 899
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BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: A0A8C9WM61_SCLFO (Tubulin-glutamate carboxypeptidase n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9WM61_SCLFO)

HSP 1 Score: 130 bits (326), Expect = 1.470e-32
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSRRPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRPTP 369
            ++ +LC +LGGN  PLLTIT     P +S++D             RP + L+ARVHPGETNASW+++G L+ L S SP+A +LR   V K++PMLNPDGVING+HR +L+G DLNRQW RP+P
Sbjct:  793 RQDVLCETLGGNSCPLLTITAM---PQSSSNDQ------ICQFKNRPYVFLTARVHPGETNASWVMKGTLEFLMSPSPMAQSLRESYVFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQRPSP 906
[Close]
BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: A0A0P7XVW6_SCLFO (Tubulin-glutamate carboxypeptidase n=11 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7XVW6_SCLFO)

HSP 1 Score: 130 bits (326), Expect = 1.480e-32
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSRRPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRPTP 369
            ++ +LC +LGGN  PLLTIT     P +S++D             RP + L+ARVHPGETNASW+++G L+ L S SP+A +LR   V K++PMLNPDGVING+HR +L+G DLNRQW RP+P
Sbjct:  841 RQDVLCETLGGNSCPLLTITAM---PQSSSNDQ------ICQFKNRPYVFLTARVHPGETNASWVMKGTLEFLMSPSPMAQSLRESYVFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQRPSP 954
[Close]
BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Match: UPI001471E83F (LOW QUALITY PROTEIN: cytosolic carboxypeptidase 1 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001471E83F)

HSP 1 Score: 130 bits (326), Expect = 1.480e-32
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    1 QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSR-RPVIVLSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGVINGHHRTNLAGLDLNRQWTRPTP 369
            ++ +LC SLGGN  PLLTIT    S           S+ +V   R RP+I LSARVHPGETNASW+++G L+ L S+SP+A +LR   + K++PMLNPDGVING+HR +L+G DLNRQW  P+P
Sbjct:  884 RQDVLCKSLGGNDCPLLTITAMPES----------NSNDYVCQFRNRPLIFLSARVHPGETNASWVMKGTLEFLMSTSPLASSLREAYIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQNPSP 997
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128202.5669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482UPF0_9ARCH4.630e-4161.98Peptidase_M14 domain-containing protein (Fragment)... [more]
A0A7S3LLF3_9STRA1.940e-3451.16Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A8M1KK75_CLUHA2.290e-3356.10cytosolic carboxypeptidase 1 isoform X3 n=1 Tax=Cl... [more]
A0A6P8FUQ3_CLUHA2.290e-3356.10Tubulin-glutamate carboxypeptidase n=5 Tax=Clupeid... [more]
A0A835YMV6_9STRA6.920e-3352.89Peptidase_M14 domain-containing protein (Fragment)... [more]
UPI001FAC46797.950e-3353.66cytosolic carboxypeptidase 1 isoform X1 n=5 Tax=Cy... [more]
A0A8C9RJ74_SCLFO1.470e-3252.85Tubulin-glutamate carboxypeptidase n=2 Tax=Sclerop... [more]
A0A8C9WM61_SCLFO1.470e-3252.85Tubulin-glutamate carboxypeptidase n=1 Tax=Sclerop... [more]
A0A0P7XVW6_SCLFO1.480e-3252.85Tubulin-glutamate carboxypeptidase n=11 Tax=Sclero... [more]
UPI001471E83F1.480e-3254.03LOW QUALITY PROTEIN: cytosolic carboxypeptidase 1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128202contigM-pyrifera_M_contig128202:7..375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score128.6
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog244447.XP_008334914.1
Preferred nameAGTPBP1
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0001654,GO:0001754,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003008,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007610,GO:0007626,GO:0007628,GO:0008092,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008344,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009987,GO:0015631,GO:0016043,GO:0016787,GO:0018193,GO:0018200,GO:0018410,GO:0019538,GO:0021533,GO:0021537,GO:0021549,GO:0021575,GO:0021587,GO:0021680,GO:0021692,GO:0021694,GO:0021695,GO:0021696,GO:0021697,GO:0021702,GO:0021772,GO:0021953,GO:0021988,GO:0022008,GO:0022037,GO:0030097,GO:0030098,GO:0030154,GO:0030182,GO:0030217,GO:0030534,GO:0030900,GO:0030902,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033077,GO:0035608,GO:0035609,GO:0035610,GO:0036211,GO:0042110,GO:0042133,GO:0043009,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045321,GO:0046530,GO:0046649,GO:0048513,GO:0048534,GO:0048592,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050877,GO:0050905,GO:0060041,GO:0060322,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0090596,GO:0090659,GO:0140096,GO:1901564
EggNOG free text desc.ATP GTP binding protein 1
EggNOG OGs38ENF@33154,3BC2Y@33208,3CSXB@33213,48831@7711,49233@7742,49STI@7898,COG2866@1,KOG3641@2759
Ec32 ortholog descriptionPeptidase M14, carboxypeptidase A
Ec32 orthologEc-00_007300.1
COG Functional cat.E
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.3466048-CDS-M-pyrifera_M_contig128202:6..3751622815795.3466048-CDS-M-pyrifera_M_contig128202:6..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128202 7..375 -
1692277573.217811-CDS-M-pyrifera_M_contig128202:6..3751692277573.217811-CDS-M-pyrifera_M_contig128202:6..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128202 7..375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128202.5669.1prot_M-pyrifera_M_contig128202.5669.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128202 7..375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128202.5669.1

>prot_M-pyrifera_M_contig128202.5669.1 ID=prot_M-pyrifera_M_contig128202.5669.1|Name=mRNA_M-pyrifera_M_contig128202.5669.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
QRSLLCVSLGGNPVPLLTITDFSSSPMTSTSDASTTSSSWVPLSRRPVIV
LSARVHPGETNASWMLRGVLDTLTSSSPIAVALRSRVVIKVIPMLNPDGV
INGHHRTNLAGLDLNRQWTRPTP
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mRNA from alignment at M-pyrifera_M_contig128202:7..375-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128202.5669.1 ID=mRNA_M-pyrifera_M_contig128202.5669.1|Name=mRNA_M-pyrifera_M_contig128202.5669.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig128202:7..375- (Macrocystis pyrifera P11B4 male)
CAACGATCATTGTTATGTGTTTCCTTGGGTGGAAACCCGGTGCCGTTGCT
TACTATTACAGACTTTTCATCCTCCCCAATGACATCTACATCGGATGCAT
CTACAACTTCATCCTCTTGGGTGCCACTTTCACGTCGTCCTGTTATTGTT
CTGTCAGCAAGAGTGCATCCAGGGGAAACGAATGCATCATGGATGCTTCG
TGGAGTGTTAGATACATTGACATCTTCTTCTCCTATTGCAGTTGCCCTGC
GGAGTCGAGTCGTGATTAAAGTGATTCCAATGTTGAATCCAGATGGTGTA
ATCAATGGACACCACCGAACAAATCTTGCTGGATTAGATCTCAACCGCCA
ATGGACAAGACCAACACCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128202:7..375-

>mRNA_M-pyrifera_M_contig128202.5669.1 ID=mRNA_M-pyrifera_M_contig128202.5669.1|Name=mRNA_M-pyrifera_M_contig128202.5669.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig128202:7..375- (Macrocystis pyrifera P11B4 male)
CAACGATCATTGTTATGTGTTTCCTTGGGTGGAAACCCGGTGCCGTTGCT
TACTATTACAGACTTTTCATCCTCCCCAATGACATCTACATCGGATGCAT
CTACAACTTCATCCTCTTGGGTGCCACTTTCACGTCGTCCTGTTATTGTT
CTGTCAGCAAGAGTGCATCCAGGGGAAACGAATGCATCATGGATGCTTCG
TGGAGTGTTAGATACATTGACATCTTCTTCTCCTATTGCAGTTGCCCTGC
GGAGTCGAGTCGTGATTAAAGTGATTCCAATGTTGAATCCAGATGGTGTA
ATCAATGGACACCACCGAACAAATCTTGCTGGATTAGATCTCAACCGCCA
ATGGACAAGACCAACACCACAACGATCATTGTTATGTGTTTCCTTGGGTG
GAAACCCGGTGCCGTTGCTTACTATTACAGACTTTTCATCCTCCCCAATG
ACATCTACATCGGATGCATCTACAACTTCATCCTCTTGGGTGCCACTTTC
ACGTCGTCCTGTTATTGTTCTGTCAGCAAGAGTGCATCCAGGGGAAACGA
ATGCATCATGGATGCTTCGTGGAGTGTTAGATACATTGACATCTTCTTCT
CCTATTGCAGTTGCCCTGCGGAGTCGAGTCGTGATTAAAGTGATTCCAAT
GTTGAATCCAGATGGTGTAATCAATGGACACCACCGAACAAATCTTGCTG
GATTAGATCTCAACCGCCAATGGACAAGACCAACACCA
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