mRNA_M-pyrifera_M_contig128198.5666.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128198.5666.1
Unique NamemRNA_M-pyrifera_M_contig128198.5666.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: A0A1I0PTD5_9BACT (Por secretion system C-terminal sorting domain-containing protein n=2 Tax=Chitinophaga TaxID=79328 RepID=A0A1I0PTD5_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.210e-9
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 ENGQAAMTCDRPTVQGWEQFTVIDAGNDQIALQGSNGLYVSS 126
            ENG AAM C+R  V  WE FTV+DAGN  IALQG+NGLYVS+
Sbjct:  800 ENGNAAMNCNRTVVGAWENFTVVDAGNGTIALQGNNGLYVSA 841
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: A0A1I2ABN1_9BACT (Por secretion system C-terminal sorting domain-containing protein n=2 Tax=Chitinophaga sp. CF118 TaxID=1884367 RepID=A0A1I2ABN1_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.210e-7
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 ENGQAAMTCDRPTVQGWEQFTVIDAGNDQIALQGSNGLYVSSE 129
            +     M C+RPTVQGWEQF V+DAGN +IALQ +NG YVSSE
Sbjct:  470 DGATTGMNCNRPTVQGWEQFLVVDAGNGKIALQ-NNGKYVSSE 511
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: A0A1I0R294_9BACT (Por secretion system C-terminal sorting domain-containing protein n=4 Tax=Chitinophaga TaxID=79328 RepID=A0A1I0R294_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 5.610e-7
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 ENGQAA-MTCDRPTVQGWEQFTVIDAGNDQIALQGSNGLYVSSE 129
            E+G  A M C+R TVQGWEQFTV+DAGN ++AL  + GLYVSSE
Sbjct:  902 EDGDTAGMNCNRATVQGWEQFTVVDAGNGKVALS-NQGLYVSSE 944
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: A0A1V9F5B6_9BACT (Glycoside hydrolase n=1 Tax=Niastella yeongjuensis TaxID=354355 RepID=A0A1V9F5B6_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.170e-6
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 ENGQAAMTCDRPTVQGWEQFTVIDAGNDQIALQGSN 108
            ENG  AMTC+RPT QGWEQF V+DAG  ++ALQ  N
Sbjct:  299 ENGTQAMTCNRPTPQGWEQFLVVDAGGGKVALQSMN 334
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: UPI001F40AECB (family 16 glycosylhydrolase n=1 Tax=Chitinophaga filiformis TaxID=104663 RepID=UPI001F40AECB)

HSP 1 Score: 57.4 bits (137), Expect = 1.170e-6
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 ENGQAAMTCDRPTVQGWEQFTVIDAGNDQIALQ 99
            ENG+ AM C+RPT QGWEQFT++DAG  ++ALQ
Sbjct:  303 ENGEQAMNCNRPTAQGWEQFTIVDAGGGKVALQ 335
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: A0A1M7R5P1_9BACT (Por secretion system C-terminal sorting domain-containing protein n=1 Tax=Chitinophaga sp. CF418 TaxID=1855287 RepID=A0A1M7R5P1_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.480e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 ENGQAAMTCDRPTVQGWEQFTVIDAGNDQIAL 96
            ENG  AM C+RPTVQGWEQF V+DAGN +IAL
Sbjct:  547 ENGAKAMNCNRPTVQGWEQFLVVDAGNGKIAL 578
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: A0A1G7NMJ5_CHIFI (Glycosyl hydrolases family 16 n=4 Tax=Chitinophaga TaxID=79328 RepID=A0A1G7NMJ5_CHIFI)

HSP 1 Score: 56.2 bits (134), Expect = 2.940e-6
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 ENGQAAMTCDRPTVQGWEQFTVIDAGNDQIALQ 99
            ENG  AM C+RPT QGWEQFT++DAG  ++ALQ
Sbjct:  302 ENGTQAMNCNRPTAQGWEQFTIVDAGGGKVALQ 334
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: A0A6N7P7J4_9BACT (Family 16 glycosylhydrolase n=1 Tax=Chitinophaga sp. SYP-B3965 TaxID=2663120 RepID=A0A6N7P7J4_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 4.000e-6
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 ENGQAAMTCDRPTVQGWEQFTVIDAGNDQIALQGSN 108
            ENG  AM C+RPT QGWEQFTV+DAG  ++AL+  N
Sbjct:  304 ENGVQAMLCNRPTAQGWEQFTVVDAGGGKVALRSIN 339
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: A0A5B2VQK9_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Chitinophaga agrisoli TaxID=2607653 RepID=A0A5B2VQK9_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.870e-6
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 ENGQAAMTCDRPTVQGWEQFTVIDAGNDQIAL 96
            ENG A M CDRPTVQGWEQF V+DAG  +IAL
Sbjct:  340 ENGVAPMMCDRPTVQGWEQFLVVDAGGGKIAL 371
[Close]
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Match: UPI00190C752F (family 16 glycosylhydrolase n=1 Tax=Mucilaginibacter segetis TaxID=2793071 RepID=UPI00190C752F)

HSP 1 Score: 55.1 bits (131), Expect = 7.410e-6
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 ENGQAAMTCDRPTVQGWEQFTVIDAGNDQIALQ 99
            ENG  AMTC R T QGWEQFTV+DAG  +IALQ
Sbjct:  305 ENGTQAMTCTRATAQGWEQFTVVDAGGGKIALQ 337
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128198.5666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A1I0PTD5_9BACT2.210e-969.05Por secretion system C-terminal sorting domain-con... [more]
A0A1I2ABN1_9BACT1.210e-765.12Por secretion system C-terminal sorting domain-con... [more]
A0A1I0R294_9BACT5.610e-765.91Por secretion system C-terminal sorting domain-con... [more]
A0A1V9F5B6_9BACT1.170e-666.67Glycoside hydrolase n=1 Tax=Niastella yeongjuensis... [more]
UPI001F40AECB1.170e-666.67family 16 glycosylhydrolase n=1 Tax=Chitinophaga f... [more]
A0A1M7R5P1_9BACT2.480e-675.00Por secretion system C-terminal sorting domain-con... [more]
A0A1G7NMJ5_CHIFI2.940e-666.67Glycosyl hydrolases family 16 n=4 Tax=Chitinophaga... [more]
A0A6N7P7J4_9BACT4.000e-663.89Family 16 glycosylhydrolase n=1 Tax=Chitinophaga s... [more]
A0A5B2VQK9_9BACT5.870e-675.00T9SS type A sorting domain-containing protein n=1 ... [more]
UPI00190C752F7.410e-672.73family 16 glycosylhydrolase n=1 Tax=Mucilaginibact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128198contigM-pyrifera_M_contig128198:2..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size468
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.193984-UTR-M-pyrifera_M_contig128198:1..191622815795.193984-UTR-M-pyrifera_M_contig128198:1..19Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128198 2..19 +
1692277573.1295092-UTR-M-pyrifera_M_contig128198:1..191692277573.1295092-UTR-M-pyrifera_M_contig128198:1..19Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128198 2..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.20642-CDS-M-pyrifera_M_contig128198:19..4871622815795.20642-CDS-M-pyrifera_M_contig128198:19..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128198 20..487 +
1692277573.1446917-CDS-M-pyrifera_M_contig128198:19..4871692277573.1446917-CDS-M-pyrifera_M_contig128198:19..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128198 20..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128198.5666.1prot_M-pyrifera_M_contig128198.5666.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128198 20..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128198.5666.1

>prot_M-pyrifera_M_contig128198.5666.1 ID=prot_M-pyrifera_M_contig128198.5666.1|Name=mRNA_M-pyrifera_M_contig128198.5666.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
MTCDRPTVQGWEQFTVIDAGNDQIALQGSNGLYVSSENGTSGMNCNRPAI
GGWEIFDWVDLGNGTFGLQGNNGQFVSSENGAAAMMCNRPTAGGWEAFTW
GTGAGARTGAGNLSDLIVDSASNGISIYPNPASDRLTIDAAGFDKVSIIN
LSGKTV
back to top

mRNA from alignment at M-pyrifera_M_contig128198:2..487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128198.5666.1 ID=mRNA_M-pyrifera_M_contig128198.5666.1|Name=mRNA_M-pyrifera_M_contig128198.5666.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig128198:2..487+ (Macrocystis pyrifera P11B4 male)
GAAAACGGGCAAGCTGCTATGACATGTGACCGACCAACCGTTCAAGGTTG
GGAACAGTTTACAGTTATTGATGCCGGAAATGATCAAATAGCGCTTCAGG
GCAGCAATGGCCTTTACGTGTCTTCAGAAAATGGTACATCAGGTATGAAT
TGTAATCGTCCAGCTATTGGTGGATGGGAAATATTTGATTGGGTGGACTT
AGGTAACGGAACTTTTGGCCTGCAAGGTAATAACGGCCAATTCGTGTCTT
CGGAAAATGGTGCAGCCGCTATGATGTGCAACCGGCCAACGGCTGGCGGT
TGGGAAGCCTTTACATGGGGCACCGGAGCTGGTGCCAGGACTGGAGCAGG
TAATTTATCAGACCTTATTGTGGATTCAGCCAGCAATGGAATTAGCATAT
ATCCTAATCCAGCTTCTGATAGGCTGACCATTGATGCCGCTGGCTTTGAT
AAAGTAAGTATCATCAATTTGAGTGGAAAAACGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig128198:2..487+

>mRNA_M-pyrifera_M_contig128198.5666.1 ID=mRNA_M-pyrifera_M_contig128198.5666.1|Name=mRNA_M-pyrifera_M_contig128198.5666.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig128198:2..487+ (Macrocystis pyrifera P11B4 male)
ATGACATGTGACCGACCAACCGTTCAAGGTTGGGAACAGTTTACAGTTAT
TGATGCCGGAAATGATCAAATAGCGCTTCAGGGCAGCAATGGCCTTTACG
TGTCTTCAGAAAATGGTACATCAGGTATGAATTGTAATCGTCCAGCTATT
GGTGGATGGGAAATATTTGATTGGGTGGACTTAGGTAACGGAACTTTTGG
CCTGCAAGGTAATAACGGCCAATTCGTGTCTTCGGAAAATGGTGCAGCCG
CTATGATGTGCAACCGGCCAACGGCTGGCGGTTGGGAAGCCTTTACATGG
GGCACCGGAGCTGGTGCCAGGACTGGAGCAGGTAATTTATCAGACCTTAT
TGTGGATTCAGCCAGCAATGGAATTAGCATATATCCTAATCCAGCTTCTG
ATAGGCTGACCATTGATGCCGCTGGCTTTGATAAAGTAAGTATCATCAAT
TTGAGTGGAAAAACGGTGATGACATGTGACCGACCAACCGTTCAAGGTTG
GGAACAGTTTACAGTTATTGATGCCGGAAATGATCAAATAGCGCTTCAGG
GCAGCAATGGCCTTTACGTGTCTTCAGAAAATGGTACATCAGGTATGAAT
TGTAATCGTCCAGCTATTGGTGGATGGGAAATATTTGATTGGGTGGACTT
AGGTAACGGAACTTTTGGCCTGCAAGGTAATAACGGCCAATTCGTGTCTT
CGGAAAATGGTGCAGCCGCTATGATGTGCAACCGGCCAACGGCTGGCGGT
TGGGAAGCCTTTACATGGGGCACCGGAGCTGGTGCCAGGACTGGAGCAGG
TAATTTATCAGACCTTATTGTGGATTCAGCCAGCAATGGAATTAGCATAT
ATCCTAATCCAGCTTCTGATAGGCTGACCATTGATGCCGCTGGCTTTGAT
AAAGTAAGTATCATCAATTTGAGTGGAAAAACGGTG
back to top