mRNA_M-pyrifera_M_contig128172.5662.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128172.5662.1
Unique NamemRNA_M-pyrifera_M_contig128172.5662.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A812THX7_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812THX7_SYMPI)

HSP 1 Score: 128 bits (322), Expect = 3.010e-32
Identity = 63/155 (40.65%), Postives = 99/155 (63.87%), Query Frame = 1
Query:   10 AKAWDLGSSGVRLFRFLHDPVQTVVDVLDTVALMLPSEVESDTPAPVRVRNAYFVQDYAGFRQEARS-AGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVV 471
            ++ WD+ + G+R+F F  +P+ TV ++L+T  L  P        +    RNA F+++Y G   + R   G + ++ S + SGDFIG +R+ GL  +L W MGS T HT +A+  +G+LYVAESTV+ SYWP +G+Q TP++KW++QA  A ++ V
Sbjct:   63 SQVWDVETLGIRVFTFQDNPLVTVRNILETALLFAPDRTRG-VQSSFAERNADFMRNYIGATLKPRKDPGGLLLNSSDIRSGDFIGVLRLDGLDPMLAWGMGSHTGHTAIAIWEHGELYVAESTVNSSYWPTNGIQRTPYQKWIEQARAAGYSTV 216          
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A7S4GIK8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GIK8_9EUGL)

HSP 1 Score: 129 bits (325), Expect = 3.250e-32
Identity = 63/155 (40.65%), Postives = 98/155 (63.23%), Query Frame = 1
Query:   10 AKAWDLGSSGVRLFRFLHDPVQTVVDVLDTVALMLPSEVESDTPAPVRVRNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVVW 474
            A  +D+  SGVR+ +F+  P+  +  +  TV+L +P+ ++ + P  V   N  F+  Y G   E  S   V  + + V SGD  G +R+ GL ++L WAMGS+T HT VA+R +G+LYV+EST  D YWP DG+Q TP+++W+ Q ++AD++ VW
Sbjct:  189 ADRFDVDHSGVRIGQFVVSPLNILKALEATVSLFVPAILKPEIPEHVAATNLDFLAKYRGLYMEPLSTPPVVPNEAEVQSGDMFGGIRLDGLDTMLAWAMGSSTGHTAVAVRVDGELYVSESTTKDGYWPTDGIQKTPWKQWIAQVQKADYHWVW 343          
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A6B2L2L9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L2L9_9EUKA)

HSP 1 Score: 123 bits (309), Expect = 3.160e-30
Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   19 WDLGSSGVRLFRFLHDPVQTVVDVLDTVALMLPSEVESDTPAPVRVRNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVAL-RRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVV 471
            +D+  +G+R+F F      T   + +TV L     V ++ P      N  F++D+       R   R+D+  S + SGD +G +R+ GL  +L+W MGS T HT +A+   N QL+VAESTV+ +YWP +G+Q+TP++ W+DQA+ A +NV+
Sbjct:  103 YDIAHNGIRIFNFTEGITMTTESIFETVLLFFGGLVGANVPEWTAEDNLAFLKDHMNLVMPERPVNRIDIPKSEIKSGDLLGVIRLDGLDPMLSWGMGSRTGHTCIAMWDNNNQLFVAESTVNSAYWPTNGIQLTPWDTWMDQAQNASYNVL 254          
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A0D2WSG0_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WSG0_CAPO3)

HSP 1 Score: 123 bits (309), Expect = 6.490e-30
Identity = 67/162 (41.36%), Postives = 94/162 (58.02%), Query Frame = 1
Query:    7 PAKAWDLGSSGVRLFRFLHDPVQTVVDVLDTV-----ALMLPSEVESDTPAPVRV--RNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVV 471
            PA+  D+G +G R+FRFL + V+T+VD+ +T+     AL L +   S T  P +    N  F+ DYA      R+   V +DPS + SGDFIG VR+ GL   + W  GS   HTTVAL  +G+L + ES    +YWPV+ VQ  P+  W+  A  AD+NV+
Sbjct:  184 PAELEDIGRNGFRVFRFLQNEVETLVDIYETLQLFLGALGLNTGGNSSTHVPTQTAENNLKFLHDYANLTMVPRTTIEVPLDPSEIESGDFIGIVRLDGLDPTIMWGSGSALGHTTVALWIDGELNICESQSKSNYWPVNLVQCNPYADWIKYATAADYNVI 345          
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A812W8K8_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W8K8_SYMMI)

HSP 1 Score: 117 bits (293), Expect = 1.720e-29
Identity = 61/139 (43.88%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   58 LHDPVQTVVDVLDTVALMLPSEVESDTPAPVRVRNAYFVQDYAGFRQEARSA-GRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVV 471
            + D   +V ++L+TV L +P   +   P   R RN  F+  Y  F  E R     +      V SGDF G +R+ GL  +L W  GSTT HTTVA+  +G+LY+ ESTV DSYWP DG+Q TP+++W+ QAE A +NVV
Sbjct:    4 MTDQATSVANLLETVLLFVPEFTQQVDPLSAR-RNVDFMAKYPKFIMEERDPLSNLPPPAENVHSGDFFGVIRLDGLDPMLAWGRGSTTGHTTVAMWMDGELYICESTVLDSYWPTDGIQKTPYKQWLKQAEEAGYNVV 141          
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A3P3Y8N8_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y8N8_PLABS)

HSP 1 Score: 113 bits (282), Expect = 3.140e-26
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  223 DVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRR--NGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVVW 474
            DVD   +GSGDF+G VR+ GL  +L+WAMGSTT HT +ALR      LYVAEST   SYWPVDGVQ TPF KW++ AERA FNVVW
Sbjct:  236 DVDE--IGSGDFLGIVRLDGLDPMLSWAMGSTTGHTAIALRHPVTNDLYVAESTAKSSYWPVDGVQATPFAKWMELAERASFNVVW 319          
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A078AH54_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AH54_STYLE)

HSP 1 Score: 84.0 bits (206), Expect = 6.730e-16
Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   37 GVRLFRFLHDPVQTVVDVLDTVALMLPSE--------VESDTPAPVRVRNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALR-RNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNV 468
            G+++F F    + T + V +     +           + S  P  +   N  F+ +  G++ E R    V++D SL+ SGDF+  +R+ G+  ++ +  G+   H+T+ALR  +G+LYV ES     YWP  G+Q   F +W++ A+ ADF+V
Sbjct:  207 GIQVFMFCDGYIDTFISVFNFALAFIGGLGTNPDLPIIGSHVPEYMEQANLNFLNETMGYQLEKREIQTVEIDESLIQSGDFLAIMRLDGVDPIIMYGSGTHAGHSTMALRFEDGELYVVESQ-DGWYWPKHGIQKNKFSQWIEWAKNADFHV 358          
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A078AWV9_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AWV9_STYLE)

HSP 1 Score: 62.8 bits (151), Expect = 1.510e-8
Identity = 46/163 (28.22%), Postives = 77/163 (47.24%), Query Frame = 1
Query:   22 DLGSSGVRLFRFLHDPVQTVVDVLDTVALM---------LPSEVESDTPAPVRVRNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYW---PVDGVQVTPFEKWVDQAERADFNVVW 474
            DL  +G++ F F       +   L+T+++          +P+  +  T    R  N  +++   G + E R    V++D SL+ SGD     R+ G+      A GS   H  +AL ++  L+V ES   D+ +      G+Q   FE+W+  AE AD++VVW
Sbjct:  102 DLHKNGIQFFTFCQTWQDMIPSTLETMSIFAGGLGLSRYIPTMGDHITDYQ-RDMNIEYLEKQLGLKLEQRIIDTVEIDKSLIKSGDLFLVRRLDGVQPFTMVASGSLVGHAAMALWQDDVLWVVES--QDALYFESGKKGIQKNKFEEWMQLAEYADYDVVW 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A812THX7_SYMPI3.010e-3240.65Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A7S4GIK8_9EUGL3.250e-3240.65Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6B2L2L9_9EUKA3.160e-3037.50Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A0D2WSG0_CAPO36.490e-3041.36Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A812W8K8_SYMMI1.720e-2943.88Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A3P3Y8N8_PLABS3.140e-2665.12Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A078AH54_STYLE6.730e-1630.07Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
A0A078AWV9_STYLE1.510e-828.22Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128172contigM-pyrifera_M_contig128172:6..479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score124.4
Seed ortholog evalue4.7e-26
Seed eggNOG ortholog192875.XP_004346245.1
Hectar predicted targeting categoryother localisation
EggNOG OGs28HIU@1,2QPWP@2759,3AH1F@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.029353-CDS-M-pyrifera_M_contig128172:5..4791622815795.029353-CDS-M-pyrifera_M_contig128172:5..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128172 6..479 -
1692277573.0535738-CDS-M-pyrifera_M_contig128172:5..4791692277573.0535738-CDS-M-pyrifera_M_contig128172:5..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128172 6..479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128172.5662.1prot_M-pyrifera_M_contig128172.5662.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128172 6..479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128172.5662.1

>prot_M-pyrifera_M_contig128172.5662.1 ID=prot_M-pyrifera_M_contig128172.5662.1|Name=mRNA_M-pyrifera_M_contig128172.5662.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
TDPAKAWDLGSSGVRLFRFLHDPVQTVVDVLDTVALMLPSEVESDTPAPV
RVRNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLT
WAMGSTTSHTTVALRRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAE
RADFNVVW
back to top

mRNA from alignment at M-pyrifera_M_contig128172:6..479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128172.5662.1 ID=mRNA_M-pyrifera_M_contig128172.5662.1|Name=mRNA_M-pyrifera_M_contig128172.5662.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig128172:6..479- (Macrocystis pyrifera P11B4 male)
ACCGACCCGGCCAAGGCGTGGGACTTGGGCAGCAGCGGCGTGCGCCTCTT CCGATTCTTGCACGACCCCGTGCAGACGGTGGTTGACGTGCTCGACACCG TCGCGCTGATGCTGCCGTCCGAGGTGGAGTCGGACACGCCCGCGCCGGTG CGCGTGCGCAACGCGTACTTCGTGCAGGACTACGCCGGCTTCCGCCAGGA GGCGCGCAGCGCTGGGCGTGTGGACGTCGACCCGTCGCTGGTGGGCAGCG GCGACTTTATCGGCACGGTGCGCATGGGTGGCCTCACGTCCGTCCTCACG TGGGCCATGGGCTCTACCACCAGCCACACCACCGTGGCGCTGCGCCGCAA CGGGCAGCTGTACGTGGCGGAGTCGACGGTGTCGGACAGCTACTGGCCGG TGGACGGCGTGCAGGTGACGCCGTTCGAGAAGTGGGTGGACCAGGCAGAG CGCGCGGACTTCAACGTGGTGTGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig128172:6..479-

>mRNA_M-pyrifera_M_contig128172.5662.1 ID=mRNA_M-pyrifera_M_contig128172.5662.1|Name=mRNA_M-pyrifera_M_contig128172.5662.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig128172:6..479- (Macrocystis pyrifera P11B4 male)
ACCGACCCGGCCAAGGCGTGGGACTTGGGCAGCAGCGGCGTGCGCCTCTT
CCGATTCTTGCACGACCCCGTGCAGACGGTGGTTGACGTGCTCGACACCG
TCGCGCTGATGCTGCCGTCCGAGGTGGAGTCGGACACGCCCGCGCCGGTG
CGCGTGCGCAACGCGTACTTCGTGCAGGACTACGCCGGCTTCCGCCAGGA
GGCGCGCAGCGCTGGGCGTGTGGACGTCGACCCGTCGCTGGTGGGCAGCG
GCGACTTTATCGGCACGGTGCGCATGGGTGGCCTCACGTCCGTCCTCACG
TGGGCCATGGGCTCTACCACCAGCCACACCACCGTGGCGCTGCGCCGCAA
CGGGCAGCTGTACGTGGCGGAGTCGACGGTGTCGGACAGCTACTGGCCGG
TGGACGGCGTGCAGGTGACGCCGTTCGAGAAGTGGGTGGACCAGGCAGAG
CGCGCGGACTTCAACGTGGTGTGGACCGACCCGGCCAAGGCGTGGGACTT
GGGCAGCAGCGGCGTGCGCCTCTTCCGATTCTTGCACGACCCCGTGCAGA
CGGTGGTTGACGTGCTCGACACCGTCGCGCTGATGCTGCCGTCCGAGGTG
GAGTCGGACACGCCCGCGCCGGTGCGCGTGCGCAACGCGTACTTCGTGCA
GGACTACGCCGGCTTCCGCCAGGAGGCGCGCAGCGCTGGGCGTGTGGACG
TCGACCCGTCGCTGGTGGGCAGCGGCGACTTTATCGGCACGGTGCGCATG
GGTGGCCTCACGTCCGTCCTCACGTGGGCCATGGGCTCTACCACCAGCCA
CACCACCGTGGCGCTGCGCCGCAACGGGCAGCTGTACGTGGCGGAGTCGA
CGGTGTCGGACAGCTACTGGCCGGTGGACGGCGTGCAGGTGACGCCGTTC
GAGAAGTGGGTGGACCAGGCAGAGCGCGCGGACTTCAACGTGGTGTGG
back to top