mRNA_M-pyrifera_M_contig128135.5659.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128135.5659.1
Unique NamemRNA_M-pyrifera_M_contig128135.5659.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: L8GF85_ACACA (Inositol 1,4,5trisphosphate receptor type 2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GF85_ACACA)

HSP 1 Score: 155 bits (393), Expect = 1.680e-41
Identity = 78/124 (62.90%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    1 VTGPFFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFVVNDEVCTSPLPRCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            V  PFFF+FHLLD+  RS+ LKYVI SVTQNGKSI+LT +LAL+++YIY+IFGFLFFRDKFV +D          C  +  C V VVNYGLRSGGG+GD+L PP W D  T  R+ YDSTFFFV
Sbjct: 2165 VISPFFFAFHLLDIGARSKELKYVISSVTQNGKSIILTAILALIVIYIYTIFGFLFFRDKFVQDDVFI-------CESMLMCFVNVVNYGLRSGGGVGDLLKPPLWGDPETPYRILYDSTFFFV 2281          
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: A0A0D2UGF9_CAPO3 (Inositol 1,4,5-triphosphate receptor n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UGF9_CAPO3)

HSP 1 Score: 120 bits (300), Expect = 5.720e-29
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 1
Query:   13 FFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFVVNDEVCTSPLPRCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            F +S  LLD++ R E LK VI+SVT+NGKSI+LT V AL++VY++SI GFL FRD FVV  +V    + R C  L  C+VT +N+GLR+GGGIGD+L     ++     RV YD  FFFV
Sbjct: 2811 FVYSLLLLDIVVREETLKNVIRSVTRNGKSIVLTAVFALIVVYMFSIVGFLIFRDDFVVETDVDGGEMERSCDSLLLCIVTTLNHGLRNGGGIGDVLRQKSKDEPLFTARVFYDLMFFFV 2930          
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: A0A0T6ATW9_9SCAR (Inositol 1,4,5-trisphosphate receptor (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6ATW9_9SCAR)

HSP 1 Score: 116 bits (291), Expect = 9.220e-28
Identity = 64/137 (46.72%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 VTGPFFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFVVN------------DEVCTSPLP-RCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            +  PFF+S  L DV+ R E L  VI+SVT+NG+SI+LT VLAL++VYI+SI G++FF+D F++N            DE C S    R C  L  C++T +N GLR+GGGIGDIL  P   ++  + RV YD  F+F+
Sbjct: 1740 IVNPFFYSVLLFDVVYREETLLNVIRSVTRNGRSIVLTGVLALILVYIFSIIGYMFFKDDFLINVDEDPNNSQVCYDEQCKSEAKERACDSLRMCILTTLNQGLRNGGGIGDILRAPSSTESLFVARVIYDLLFYFI 1876          
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: A0A7R9CDT8_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CDT8_TIMCR)

HSP 1 Score: 113 bits (283), Expect = 2.240e-27
Identity = 64/133 (48.12%), Postives = 86/133 (64.66%), Query Frame = 1
Query:   10 PFFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFVV--NDEVCTSPL----------PRCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            PFF+S  L DV+ R E L  VI+SVT+NG+SI+LT VLAL++VY++SI G++FF+D F+V  +DEV                R C  L  C+VT +N GLR+GGGIGDIL  P   ++  + RV YD  FFF+
Sbjct:  109 PFFYSVLLFDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFLVPVDDEVVHKDSGRVTVSGEVRERACDSLVMCIVTTLNQGLRNGGGIGDILRAPSSNESLYVARVVYDLLFFFI 241          
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: A0A8C8RUA4_9SAUR (Inositol 1,4,5-trisphosphate receptor n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8RUA4_9SAUR)

HSP 1 Score: 115 bits (287), Expect = 3.210e-27
Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = 1
Query:   13 FFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFVV-------------NDEVCTSPLP------RCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            FF+S  L D++ R E L  VIKSVT+NG+SI+LT VLAL++VY++SI G+LFF+D F++             N E C+S +P        C  L  C+VTV+++GLRSGGG+GD+L  P  E+     RV YD  FFF+
Sbjct: 2296 FFYSLLLFDLVYREETLLNVIKSVTRNGRSIILTAVLALILVYLFSIVGYLFFKDDFILEVDKLPNETLLTGNGENCSSVIPSEEDKEHTCETLLMCIVTVLSHGLRSGGGVGDVLRKPSKEEPLFAARVIYDLLFFFM 2434          
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: A0A665X738_ECHNA (Inositol 1,4,5-trisphosphate receptor n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665X738_ECHNA)

HSP 1 Score: 114 bits (285), Expect = 5.980e-27
Identity = 61/125 (48.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   13 FFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFV-----VNDEVCTSPLPRCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            FF+S  L D++ R E L  VIKSVT+NG+SI+LT VLAL++VY++SI G++FF+D F+     + D+   S + R C  L  C+VTV+++GLRSGGG+GD+L  P  E+     RV YD  FFF+
Sbjct: 2349 FFYSLLLFDLVYREETLLNVIKSVTRNGRSIVLTAVLALILVYLFSIVGYIFFKDDFILECFQIEDD---SDMERTCDSLLMCIVTVLSHGLRSGGGVGDVLRKPSKEEPLFAARVVYDLLFFFM 2470          
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: A0A3L8SIK9_CHLGU (Ion_trans domain-containing protein n=5 Tax=Neognathae TaxID=8825 RepID=A0A3L8SIK9_CHLGU)

HSP 1 Score: 111 bits (277), Expect = 6.720e-27
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   13 FFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFVVNDEVCTSPLP-----------RCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            FF+SF L D++ R E L  VIKSVT+NG+SI+LT VLAL++VY++SI GFLF +D F++  +      P           R C  L  C+VTV+N GLR+GGG+GD+L  P  ++     RV YD  F+F+
Sbjct:   89 FFYSFLLFDLVYREETLLNVIKSVTRNGRSIILTAVLALILVYLFSIIGFLFLKDDFIMEVDRLKIRTPAAGEEEEDGIERTCDTLLMCIVTVLNQGLRNGGGVGDVLRKPSKDEPLFAARVVYDLLFYFI 219          
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: UPI0010A0199F (inositol 1,4,5-trisphosphate receptor type 2 isoform X1 n=2 Tax=Podarcis muralis TaxID=64176 RepID=UPI0010A0199F)

HSP 1 Score: 114 bits (284), Expect = 8.050e-27
Identity = 60/128 (46.88%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   13 FFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFVV--------NDEVCTSPLPRCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            FF+SF L D++ R E L  VIKSVT+NG+SI+LT VLAL++VY++SI GFLF +D F++        ++E     + R C  L  C+VTV+N GLR+GGG+GD+L  P  ++     RV YD  F+F+
Sbjct: 1428 FFYSFLLFDLVYREETLLNVIKSVTRNGRSIILTAVLALILVYLFSIVGFLFLKDDFIMEVERTPITDEEPDEDGIERTCDTLLMCIVTVLNQGLRNGGGVGDVLRKPSKDEPLFAARVVYDLLFYFI 1555          
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: A0A8C7UYK7_ONCMY (Inositol 1,4,5-trisphosphate receptor n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7UYK7_ONCMY)

HSP 1 Score: 114 bits (284), Expect = 8.160e-27
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   13 FFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFVVNDEVCTSP--LPRCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            FF+S  L D++ R E L  VIKSVT+NG+SI+LT VLAL++VY++SI G++FF+D F++  +    P    R C  L  C+VTV+++GLRSGGG+GD+L  P  E+     RV YD  FFF+
Sbjct: 2326 FFYSLLLFDLVYREETLLNVIKSVTRNGRSIVLTAVLALILVYLFSIVGYIFFKDDFILEVDQILLPDGKERTCDSLLMCIVTVLSHGLRSGGGVGDVLRKPSKEEPLFAARVIYDLLFFFM 2447          
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Match: A0A7R9CNT5_TIMPO (Inositol 1,4,5-trisphosphate receptor n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9CNT5_TIMPO)

HSP 1 Score: 114 bits (284), Expect = 8.160e-27
Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   10 PFFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYSIFGFLFFRDKFVV--NDEVCTSPL----------PRCCHLLTACLVTVVNYGLRSGGGIGDILVPPRWEDAGTLLRVSYDSTFFFV 372
            PFF+S  L DV+ R E L  VI+SVT+NG+SI+LT VLAL++VY++SI G++FF+D F+V  +DEV  +             R C  L  C+VT +N GLR+GGGIGDIL  P   ++  + RV YD  FFF+
Sbjct: 2329 PFFYSVLLFDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFLVPVDDEVVHNDSGRVTVSGEVRERACDSLVMCIVTTLNQGLRNGGGIGDILRAPSSNESLYVARVVYDLLFFFI 2461          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128135.5659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GF85_ACACA1.680e-4162.90Inositol 1,4,5trisphosphate receptor type 2, putat... [more]
A0A0D2UGF9_CAPO35.720e-2952.50Inositol 1,4,5-triphosphate receptor n=1 Tax=Capsa... [more]
A0A0T6ATW9_9SCAR9.220e-2846.72Inositol 1,4,5-trisphosphate receptor (Fragment) n... [more]
A0A7R9CDT8_TIMCR2.240e-2748.12Hypothetical protein n=1 Tax=Timema cristinae TaxI... [more]
A0A8C8RUA4_9SAUR3.210e-2746.04Inositol 1,4,5-trisphosphate receptor n=1 Tax=Pelu... [more]
A0A665X738_ECHNA5.980e-2748.80Inositol 1,4,5-trisphosphate receptor n=1 Tax=Eche... [more]
A0A3L8SIK9_CHLGU6.720e-2745.80Ion_trans domain-containing protein n=5 Tax=Neogna... [more]
UPI0010A0199F8.050e-2746.88inositol 1,4,5-trisphosphate receptor type 2 isofo... [more]
A0A8C7UYK7_ONCMY8.160e-2749.18Inositol 1,4,5-trisphosphate receptor n=1 Tax=Onco... [more]
A0A7R9CNT5_TIMPO8.160e-2748.12Inositol 1,4,5-trisphosphate receptor n=1 Tax=Time... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128135contigM-pyrifera_M_contig128135:90..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score123.2
Seed ortholog evalue8.5e-26
Seed eggNOG ortholog192875.XP_004347577.1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
EggNOG OGs38BAI@33154,KOG3533@1,KOG3533@2759
COG Functional cat.T
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.8510056-CDS-M-pyrifera_M_contig128135:89..2271622815794.8510056-CDS-M-pyrifera_M_contig128135:89..227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128135 90..227 -
1692277572.9433784-CDS-M-pyrifera_M_contig128135:89..2271692277572.9433784-CDS-M-pyrifera_M_contig128135:89..227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128135 90..227 -
1622815794.862206-CDS-M-pyrifera_M_contig128135:255..4981622815794.862206-CDS-M-pyrifera_M_contig128135:255..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128135 256..498 -
1692277572.9539506-CDS-M-pyrifera_M_contig128135:255..4981692277572.9539506-CDS-M-pyrifera_M_contig128135:255..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128135 256..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128135.5659.1prot_M-pyrifera_M_contig128135.5659.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128135 90..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128135.5659.1

>prot_M-pyrifera_M_contig128135.5659.1 ID=prot_M-pyrifera_M_contig128135.5659.1|Name=mRNA_M-pyrifera_M_contig128135.5659.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
VTGPFFFSFHLLDVIPRSELLKYVIKSVTQNGKSILLTVVLALVIVYIYS
IFGFLFFRDKFVVNDEVCTSPLPRCCHLLTACLVTVVNYGLRSGGGIGDI
LVPPRWEDAGTLLRVSYDSTFFFVGT*
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mRNA from alignment at M-pyrifera_M_contig128135:90..498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128135.5659.1 ID=mRNA_M-pyrifera_M_contig128135.5659.1|Name=mRNA_M-pyrifera_M_contig128135.5659.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=409bp|location=Sequence derived from alignment at M-pyrifera_M_contig128135:90..498- (Macrocystis pyrifera P11B4 male)
GTGACGGGCCCGTTCTTCTTTAGCTTCCACCTGCTCGACGTCATCCCGAG GAGCGAACTGCTGAAGTACGTCATCAAGAGCGTCACGCAGAACGGAAAAT CGATCCTCCTCACCGTTGTGCTGGCCCTCGTCATCGTGTACATCTACTCC ATCTTCGGCTTCCTCTTCTTCCGCGACAAGTTCGTTGTCAACGATGAGGT TTGCACCAGCCCTCTCCCACGCTGCTGCCATTTGCTGACGGCTGTAGACT GCTTGTGAGTCGATATTCCAGTGCCTCGTCACTGTTGTCAACTACGGCCT ACGCTCCGGCGGAGGCATTGGTGACATTCTGGTCCCTCCCAGATGGGAAG ACGCGGGCACTCTCCTGCGTGTATCCTACGACTCTACATTCTTCTTCGTG GGTACGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128135:90..498-

>mRNA_M-pyrifera_M_contig128135.5659.1 ID=mRNA_M-pyrifera_M_contig128135.5659.1|Name=mRNA_M-pyrifera_M_contig128135.5659.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig128135:90..498- (Macrocystis pyrifera P11B4 male)
GTGACGGGCCCGTTCTTCTTTAGCTTCCACCTGCTCGACGTCATCCCGAG
GAGCGAACTGCTGAAGTACGTCATCAAGAGCGTCACGCAGAACGGAAAAT
CGATCCTCCTCACCGTTGTGCTGGCCCTCGTCATCGTGTACATCTACTCC
ATCTTCGGCTTCCTCTTCTTCCGCGACAAGTTCGTTGTCAACGATGAGGT
TTGCACCAGCCCTCTCCCACGCTGCTGCCATTTGCTGACGGCTGTGACGG
GCCCGTTCTTCTTTAGCTTCCACCTGCTCGACGTCATCCCGAGGAGCGAA
CTGCTGAAGTACGTCATCAAGAGCGTCACGCAGAACGGAAAATCGATCCT
CCTCACCGTTGTGCTGGCCCTCGTCATCGTGTACATCTACTCCATCTTCG
GCTTCCTCTTCTTCCGCGACAAGTTCGTTGTCAACGATGAGGTTTGCACC
AGCCCTCTCCCACGCTGCTGCCATTTGCTGACGGCTTGCCTCGTCACTGT
TGTCAACTACGGCCTACGCTCCGGCGGAGGCATTGGTGACATTCTGGTCC
CTCCCAGATGGGAAGACGCGGGCACTCTCCTGCGTGTATCCTACGACTCT
ACATTCTTCTTCGTGGGTACGTAGTGCCTCGTCACTGTTGTCAACTACGG
CCTACGCTCCGGCGGAGGCATTGGTGACATTCTGGTCCCTCCCAGATGGG
AAGACGCGGGCACTCTCCTGCGTGTATCCTACGACTCTACATTCTTCTTC
GTGGGTACGTAG
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