mRNA_M-pyrifera_M_contig128129.5655.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128129.5655.1
Unique NamemRNA_M-pyrifera_M_contig128129.5655.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128129.5655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128129contigM-pyrifera_M_contig128129:5..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue3.5e-08
Seed eggNOG ortholog1280954.HPO_02547
Hectar predicted targeting categoryother localisation
EggNOG free text desc.AAA ATPase domain
EggNOG OGs1PVW0@1224,2V73T@28211,43Z1H@69657,COG2909@1,COG2909@2
COG Functional cat.K
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.6498485-CDS-M-pyrifera_M_contig128129:4..4931622815794.6498485-CDS-M-pyrifera_M_contig128129:4..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128129 5..493 +
1692277572.8326023-CDS-M-pyrifera_M_contig128129:4..4931692277572.8326023-CDS-M-pyrifera_M_contig128129:4..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128129 5..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128129.5655.1prot_M-pyrifera_M_contig128129.5655.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128129 5..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128129.5655.1

>prot_M-pyrifera_M_contig128129.5655.1 ID=prot_M-pyrifera_M_contig128129.5655.1|Name=mRNA_M-pyrifera_M_contig128129.5655.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
VVRTAFIEAAVLWNQSHIARPHIEEMVKLPSSSLSPRKWADFVFWADRVE
DGLSGKNSDILPEAFRLDHEQEFDAAAKALRLQNFTFLAATSLCRSQAKN
ALTTADRWFQEIGAVAGRKYIRKSFDVSRCGLPGISRGRYQAARRQPYGL
TNKAQTVRGEIIE
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mRNA from alignment at M-pyrifera_M_contig128129:5..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128129.5655.1 ID=mRNA_M-pyrifera_M_contig128129.5655.1|Name=mRNA_M-pyrifera_M_contig128129.5655.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig128129:5..493+ (Macrocystis pyrifera P11B4 male)
GTCGTTCGAACTGCATTCATCGAAGCGGCAGTCCTCTGGAACCAATCTCA
CATTGCCCGGCCTCACATCGAGGAGATGGTAAAGCTTCCTTCTTCGTCGC
TCAGCCCGCGCAAGTGGGCTGATTTCGTGTTCTGGGCAGATCGCGTGGAA
GACGGTTTGTCGGGCAAAAATTCCGACATCCTTCCGGAGGCATTCCGTCT
GGACCATGAACAGGAGTTCGATGCAGCTGCAAAGGCATTACGTTTGCAAA
ATTTTACATTTCTGGCCGCAACCAGCCTGTGTCGTTCTCAGGCTAAAAAT
GCACTTACCACAGCCGATCGTTGGTTTCAGGAAATCGGCGCCGTTGCCGG
CCGCAAATACATCAGAAAATCATTCGATGTCTCCCGCTGCGGATTGCCCG
GGATCTCACGGGGGCGATACCAAGCCGCTCGGCGGCAGCCTTACGGGCTC
ACCAACAAGGCACAAACAGTCCGGGGCGAGATCATAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128129:5..493+

>mRNA_M-pyrifera_M_contig128129.5655.1 ID=mRNA_M-pyrifera_M_contig128129.5655.1|Name=mRNA_M-pyrifera_M_contig128129.5655.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig128129:5..493+ (Macrocystis pyrifera P11B4 male)
GTCGTTCGAACTGCATTCATCGAAGCGGCAGTCCTCTGGAACCAATCTCA
CATTGCCCGGCCTCACATCGAGGAGATGGTAAAGCTTCCTTCTTCGTCGC
TCAGCCCGCGCAAGTGGGCTGATTTCGTGTTCTGGGCAGATCGCGTGGAA
GACGGTTTGTCGGGCAAAAATTCCGACATCCTTCCGGAGGCATTCCGTCT
GGACCATGAACAGGAGTTCGATGCAGCTGCAAAGGCATTACGTTTGCAAA
ATTTTACATTTCTGGCCGCAACCAGCCTGTGTCGTTCTCAGGCTAAAAAT
GCACTTACCACAGCCGATCGTTGGTTTCAGGAAATCGGCGCCGTTGCCGG
CCGCAAATACATCAGAAAATCATTCGATGTCTCCCGCTGCGGATTGCCCG
GGATCTCACGGGGGCGATACCAAGCCGCTCGGCGGCAGCCTTACGGGCTC
ACCAACAAGGCACAAACAGTCCGGGGCGAGATCATAGAGGTCGTTCGAAC
TGCATTCATCGAAGCGGCAGTCCTCTGGAACCAATCTCACATTGCCCGGC
CTCACATCGAGGAGATGGTAAAGCTTCCTTCTTCGTCGCTCAGCCCGCGC
AAGTGGGCTGATTTCGTGTTCTGGGCAGATCGCGTGGAAGACGGTTTGTC
GGGCAAAAATTCCGACATCCTTCCGGAGGCATTCCGTCTGGACCATGAAC
AGGAGTTCGATGCAGCTGCAAAGGCATTACGTTTGCAAAATTTTACATTT
CTGGCCGCAACCAGCCTGTGTCGTTCTCAGGCTAAAAATGCACTTACCAC
AGCCGATCGTTGGTTTCAGGAAATCGGCGCCGTTGCCGGCCGCAAATACA
TCAGAAAATCATTCGATGTCTCCCGCTGCGGATTGCCCGGGATCTCACGG
GGGCGATACCAAGCCGCTCGGCGGCAGCCTTACGGGCTCACCAACAAGGC
ACAAACAGTCCGGGGCGAGATCATAGAG
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