mRNA_M-pyrifera_M_contig12812.5652.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A4D6E522_9PHAE (Ribosomal protein S19 n=4 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E522_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 3.530e-17 Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1
Query: 25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQK 168
A GLK+QIYNGKDMITRKIKPE+VGHKLGEFVT+RK F AKKK+ K
Sbjct: 39 AVGLKLQIYNGKDMITRKIKPEMVGHKLGEFVTTRKNFIAKKKKFNTK 86
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A1I9LWB1_9PHAE (Ribosomal protein S19 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LWB1_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 1.070e-16 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1
Query: 31 GLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQKNK 174
GLK+ IYNGKDMITRKIKPE+VGHKLGEFVT+RK F KKK+I K K
Sbjct: 41 GLKLNIYNGKDMITRKIKPEMVGHKLGEFVTTRKTFIPKKKKIILKKK 88
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: Q8LWZ8_9PHAE (Ribosomal protein S19 n=50 Tax=Phaeophyceae TaxID=2870 RepID=Q8LWZ8_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 6.150e-16 Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1
Query: 25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKK-KQITQKNK 174
A GLK+QIYNGKDMI+RKIKPE+VGHKLGEFVT+RK F AKK K+ T K K
Sbjct: 39 AVGLKLQIYNGKDMISRKIKPEMVGHKLGEFVTTRKNFIAKKIKKTTTKKK 89
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A8F0K160_9PHAE (Ribosomal protein S19 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0K160_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 8.730e-16 Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1
Query: 25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQIT 162
A GLK+QIYNGK+MI+RKIKPE+VGHKLGEFVT+RK F KKK+ T
Sbjct: 39 AVGLKLQIYNGKEMISRKIKPEMVGHKLGEFVTTRKTFVPKKKKAT 84
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A8F0K0B6_AKKLU (Ribosomal protein S19 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0K0B6_AKKLU) HSP 1 Score: 72.0 bits (175), Expect = 3.550e-15 Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1
Query: 25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQ-KNK 174
A GLK+ IYNGK+MI+RKIKPE+VGHKLGEFVT+RK F KKK+ T KNK
Sbjct: 39 AVGLKLHIYNGKEMISRKIKPEMVGHKLGEFVTTRKTFVPKKKKATTIKNK 89
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A8F0K0A6_9PHAE (Ribosomal protein S19 n=1 Tax=Dictyoneurum californicum TaxID=169784 RepID=A0A8F0K0A6_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 6.960e-15 Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQK 168
A GLK+QIYNGKDM++RKIK E+VGHKLGEFVT+RK F KKK T K
Sbjct: 39 AVGLKLQIYNGKDMVSRKIKSEMVGHKLGEFVTTRKNFIVKKKSNTSK 86
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A8F0FCH2_9PHAE (Ribosomal protein S19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FCH2_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 2.970e-14 Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1
Query: 25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQIT-QKNK 174
A GLK+ IYNGK+MI+RKIKPE+VGHKLGEFV +RK F KKK++ +KNK
Sbjct: 39 AVGLKLHIYNGKEMISRKIKPEMVGHKLGEFVMTRKTFIPKKKKVVLKKNK 89
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A0U1XCH3_SCYLO (Ribosomal protein S19 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCH3_SCYLO) HSP 1 Score: 68.9 bits (167), Expect = 5.410e-14 Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query: 25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQKNK 174
A GLK+QIYNGKDMI R+IKPE+VGHK+GEFV +RK F K+K+ T K K
Sbjct: 37 AVGLKLQIYNGKDMILRRIKPEMVGHKIGEFVRTRKTFIPKQKKGTIKKK 86
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A0U1XD88_9PHAE (Ribosomal protein S19 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XD88_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 5.690e-14 Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query: 25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQKNK 174
A GLK+QIYNGKDMI RKIKPE+VGHK+GEF+ +RK F KKK+ K K
Sbjct: 39 AVGLKLQIYNGKDMILRKIKPEMVGHKIGEFIKTRKTFIPKKKKGIIKKK 88
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: Q2TUJ8_FUCVE (Ribosomal protein S19 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUJ8_FUCVE) HSP 1 Score: 68.6 bits (166), Expect = 6.930e-14 Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1
Query: 25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQ 156
A GLK+ I+NGKDM+TRKIKPE+VGHKLGEFVT+RK F KKK+
Sbjct: 38 AVGLKLTIHNGKDMLTRKIKPEMVGHKLGEFVTTRKNFIPKKKK 81 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12812.5652.1 >prot_M-pyrifera_M_contig12812.5652.1 ID=prot_M-pyrifera_M_contig12812.5652.1|Name=mRNA_M-pyrifera_M_contig12812.5652.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp MALLFLLYAGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKback to top mRNA from alignment at M-pyrifera_M_contig12812:4301..4474+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12812.5652.1 ID=mRNA_M-pyrifera_M_contig12812.5652.1|Name=mRNA_M-pyrifera_M_contig12812.5652.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig12812:4301..4474+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12812:4301..4474+ >mRNA_M-pyrifera_M_contig12812.5652.1 ID=mRNA_M-pyrifera_M_contig12812.5652.1|Name=mRNA_M-pyrifera_M_contig12812.5652.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig12812:4301..4474+ (Macrocystis pyrifera P11B4 male)back to top |