mRNA_M-pyrifera_M_contig12812.5652.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12812.5652.1
Unique NamemRNA_M-pyrifera_M_contig12812.5652.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A4D6E522_9PHAE (Ribosomal protein S19 n=4 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E522_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.530e-17
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1
Query:   25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQK 168
            A GLK+QIYNGKDMITRKIKPE+VGHKLGEFVT+RK F AKKK+   K
Sbjct:   39 AVGLKLQIYNGKDMITRKIKPEMVGHKLGEFVTTRKNFIAKKKKFNTK 86          
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A1I9LWB1_9PHAE (Ribosomal protein S19 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LWB1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.070e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   31 GLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQKNK 174
            GLK+ IYNGKDMITRKIKPE+VGHKLGEFVT+RK F  KKK+I  K K
Sbjct:   41 GLKLNIYNGKDMITRKIKPEMVGHKLGEFVTTRKTFIPKKKKIILKKK 88          
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: Q8LWZ8_9PHAE (Ribosomal protein S19 n=50 Tax=Phaeophyceae TaxID=2870 RepID=Q8LWZ8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.150e-16
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1
Query:   25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKK-KQITQKNK 174
            A GLK+QIYNGKDMI+RKIKPE+VGHKLGEFVT+RK F AKK K+ T K K
Sbjct:   39 AVGLKLQIYNGKDMISRKIKPEMVGHKLGEFVTTRKNFIAKKIKKTTTKKK 89          
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A8F0K160_9PHAE (Ribosomal protein S19 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0K160_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.730e-16
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1
Query:   25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQIT 162
            A GLK+QIYNGK+MI+RKIKPE+VGHKLGEFVT+RK F  KKK+ T
Sbjct:   39 AVGLKLQIYNGKEMISRKIKPEMVGHKLGEFVTTRKTFVPKKKKAT 84          
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A8F0K0B6_AKKLU (Ribosomal protein S19 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0K0B6_AKKLU)

HSP 1 Score: 72.0 bits (175), Expect = 3.550e-15
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1
Query:   25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQ-KNK 174
            A GLK+ IYNGK+MI+RKIKPE+VGHKLGEFVT+RK F  KKK+ T  KNK
Sbjct:   39 AVGLKLHIYNGKEMISRKIKPEMVGHKLGEFVTTRKTFVPKKKKATTIKNK 89          
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A8F0K0A6_9PHAE (Ribosomal protein S19 n=1 Tax=Dictyoneurum californicum TaxID=169784 RepID=A0A8F0K0A6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.960e-15
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQK 168
            A GLK+QIYNGKDM++RKIK E+VGHKLGEFVT+RK F  KKK  T K
Sbjct:   39 AVGLKLQIYNGKDMVSRKIKSEMVGHKLGEFVTTRKNFIVKKKSNTSK 86          
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A8F0FCH2_9PHAE (Ribosomal protein S19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FCH2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.970e-14
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1
Query:   25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQIT-QKNK 174
            A GLK+ IYNGK+MI+RKIKPE+VGHKLGEFV +RK F  KKK++  +KNK
Sbjct:   39 AVGLKLHIYNGKEMISRKIKPEMVGHKLGEFVMTRKTFIPKKKKVVLKKNK 89          
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A0U1XCH3_SCYLO (Ribosomal protein S19 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCH3_SCYLO)

HSP 1 Score: 68.9 bits (167), Expect = 5.410e-14
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQKNK 174
            A GLK+QIYNGKDMI R+IKPE+VGHK+GEFV +RK F  K+K+ T K K
Sbjct:   37 AVGLKLQIYNGKDMILRRIKPEMVGHKIGEFVRTRKTFIPKQKKGTIKKK 86          
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: A0A0U1XD88_9PHAE (Ribosomal protein S19 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XD88_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.690e-14
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:   25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQITQKNK 174
            A GLK+QIYNGKDMI RKIKPE+VGHK+GEF+ +RK F  KKK+   K K
Sbjct:   39 AVGLKLQIYNGKDMILRKIKPEMVGHKIGEFIKTRKTFIPKKKKGIIKKK 88          
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Match: Q2TUJ8_FUCVE (Ribosomal protein S19 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUJ8_FUCVE)

HSP 1 Score: 68.6 bits (166), Expect = 6.930e-14
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1
Query:   25 AGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKKKQ 156
            A GLK+ I+NGKDM+TRKIKPE+VGHKLGEFVT+RK F  KKK+
Sbjct:   38 AVGLKLTIHNGKDMLTRKIKPEMVGHKLGEFVTTRKNFIPKKKK 81          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12812.5652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D6E522_9PHAE3.530e-1779.17Ribosomal protein S19 n=4 Tax=Laminariaceae TaxID=... [more]
A0A1I9LWB1_9PHAE1.070e-1677.08Ribosomal protein S19 n=1 Tax=Pleurocladia lacustr... [more]
Q8LWZ8_9PHAE6.150e-1676.47Ribosomal protein S19 n=50 Tax=Phaeophyceae TaxID=... [more]
A0A8F0K160_9PHAE8.730e-1676.09Ribosomal protein S19 n=1 Tax=Pseudochorda nagaii ... [more]
A0A8F0K0B6_AKKLU3.550e-1572.55Ribosomal protein S19 n=1 Tax=Akkesiphycus lubricu... [more]
A0A8F0K0A6_9PHAE6.960e-1572.92Ribosomal protein S19 n=1 Tax=Dictyoneurum califor... [more]
A0A8F0FCH2_9PHAE2.970e-1468.63Ribosomal protein S19 n=1 Tax=Chorda asiatica TaxI... [more]
A0A0U1XCH3_SCYLO5.410e-1468.00Ribosomal protein S19 n=1 Tax=Scytosiphon lomentar... [more]
A0A0U1XD88_9PHAE5.690e-1468.00Ribosomal protein S19 n=1 Tax=Colpomenia peregrina... [more]
Q2TUJ8_FUCVE6.930e-1475.00Ribosomal protein S19 n=3 Tax=Fucus TaxID=3011 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12812contigM-pyrifera_M_contig12812:4301..4474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.5466247-CDS-M-pyrifera_M_contig12812:4300..44741622815794.5466247-CDS-M-pyrifera_M_contig12812:4300..4474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12812 4301..4474 +
1692277572.799535-CDS-M-pyrifera_M_contig12812:4300..44741692277572.799535-CDS-M-pyrifera_M_contig12812:4300..4474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12812 4301..4474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12812.5652.1prot_M-pyrifera_M_contig12812.5652.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12812 4301..4474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12812.5652.1

>prot_M-pyrifera_M_contig12812.5652.1 ID=prot_M-pyrifera_M_contig12812.5652.1|Name=mRNA_M-pyrifera_M_contig12812.5652.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
MALLFLLYAGGLKVQIYNGKDMITRKIKPEIVGHKLGEFVTSRKIFTAKK
KQITQKNK
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mRNA from alignment at M-pyrifera_M_contig12812:4301..4474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12812.5652.1 ID=mRNA_M-pyrifera_M_contig12812.5652.1|Name=mRNA_M-pyrifera_M_contig12812.5652.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig12812:4301..4474+ (Macrocystis pyrifera P11B4 male)
ATGGCTTTACTATTTTTATTGTACGCTGGTGGTTTAAAGGTACAAATATA TAATGGAAAAGATATGATTACCCGAAAAATTAAACCTGAAATAGTTGGTC ACAAATTAGGAGAATTTGTGACCTCACGAAAAATTTTTACAGCAAAAAAA AAACAAATAACACAAAAAAATAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12812:4301..4474+

>mRNA_M-pyrifera_M_contig12812.5652.1 ID=mRNA_M-pyrifera_M_contig12812.5652.1|Name=mRNA_M-pyrifera_M_contig12812.5652.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig12812:4301..4474+ (Macrocystis pyrifera P11B4 male)
ATGGCTTTACTATTTTTATTGTACGCTGGTGGTTTAAAGGTACAAATATA
TAATGGAAAAGATATGATTACCCGAAAAATTAAACCTGAAATAGTTGGTC
ACAAATTAGGAGAATTTGTGACCTCACGAAAAATTTTTACAGCAAAAAAA
AAACAAATAACACAAAAAAATAAAATGGCTTTACTATTTTTATTGTACGC
TGGTGGTTTAAAGGTACAAATATATAATGGAAAAGATATGATTACCCGAA
AAATTAAACCTGAAATAGTTGGTCACAAATTAGGAGAATTTGTGACCTCA
CGAAAAATTTTTACAGCAAAAAAAAAACAAATAACACAAAAAAATAAA
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