mRNA_M-pyrifera_M_contig12808.5646.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12808.5646.1
Unique NamemRNA_M-pyrifera_M_contig12808.5646.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12808.5646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12808contigM-pyrifera_M_contig12808:1549..2093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size545
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12808.5646.1prot_M-pyrifera_M_contig12808.5646.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12808 1717..2046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.2728338-UTR-M-pyrifera_M_contig12808:1548..17161622815794.2728338-UTR-M-pyrifera_M_contig12808:1548..1716Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12808 1549..1716 +
1692277572.671482-UTR-M-pyrifera_M_contig12808:1548..17161692277572.671482-UTR-M-pyrifera_M_contig12808:1548..1716Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12808 1549..1716 +
1622815794.3042111-UTR-M-pyrifera_M_contig12808:2046..20931622815794.3042111-UTR-M-pyrifera_M_contig12808:2046..2093Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12808 2047..2093 +
1692277572.6972122-UTR-M-pyrifera_M_contig12808:2046..20931692277572.6972122-UTR-M-pyrifera_M_contig12808:2046..2093Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12808 2047..2093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.2861917-CDS-M-pyrifera_M_contig12808:1716..20461622815794.2861917-CDS-M-pyrifera_M_contig12808:1716..2046Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12808 1717..2046 +
1692277572.6875358-CDS-M-pyrifera_M_contig12808:1716..20461692277572.6875358-CDS-M-pyrifera_M_contig12808:1716..2046Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12808 1717..2046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12808.5646.1

>prot_M-pyrifera_M_contig12808.5646.1 ID=prot_M-pyrifera_M_contig12808.5646.1|Name=mRNA_M-pyrifera_M_contig12808.5646.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MTQQVWLAFFLSSTKRALRFLSPQISTRPLLLLLSRRPTHDHQYTSKMPP
SMACMNAGAELASKQKARMHGASLTQYIRYVQKQTKEPCVHPRVSTPAHS
QRSFLPCSR*
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mRNA from alignment at M-pyrifera_M_contig12808:1549..2093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12808.5646.1 ID=mRNA_M-pyrifera_M_contig12808.5646.1|Name=mRNA_M-pyrifera_M_contig12808.5646.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=545bp|location=Sequence derived from alignment at M-pyrifera_M_contig12808:1549..2093+ (Macrocystis pyrifera P11B4 male)
GCTGATGCCGTTCAGTTTTTACAATATTTTACAACCGCGAGTATATACGC
GTGAGTACCCTACACATCCCCATCGAATGCGTATTGATACGATAATCCCG
TCAAATACCTCAACAACTTACCAGTACTTTTTATTTTTTCCTTTTCTACC
GTCGGAGACGCGCGACAGATGACACAGCAGGTCTGGCTGGCCTTTTTCTT
GTCCAGCACTAAGAGAGCACTCCGTTTCCTTTCGCCGCAAATTTCGACAC
GACCACTATTATTGCTGCTATCACGACGACCAACTCATGATCACCAGTAT
ACCTCAAAAATGCCTCCATCCATGGCCTGTATGAATGCAGGTGCGGAGCT
TGCAAGCAAGCAAAAGGCACGCATGCATGGAGCCTCACTCACTCAGTACA
TACGATACGTACAAAAACAAACCAAAGAACCGTGTGTACATCCACGTGTG
TCTACACCGGCCCACAGCCAACGATCTTTTCTTCCTTGCAGCAGGTAGAT
GGGAGTTTGCGAGCACGAGGCATGCTACTACAGGAGATTTATGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12808:1549..2093+

>mRNA_M-pyrifera_M_contig12808.5646.1 ID=mRNA_M-pyrifera_M_contig12808.5646.1|Name=mRNA_M-pyrifera_M_contig12808.5646.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig12808:1549..2093+ (Macrocystis pyrifera P11B4 male)
ATGACACAGCAGGTCTGGCTGGCCTTTTTCTTGTCCAGCACTAAGAGAGC
ACTCCGTTTCCTTTCGCCGCAAATTTCGACACGACCACTATTATTGCTGC
TATCACGACGACCAACTCATGATCACCAGTATACCTCAAAAATGCCTCCA
TCCATGGCCTGTATGAATGCAGGTGCGGAGCTTGCAAGCAAGCAAAAGGC
ACGCATGCATGGAGCCTCACTCACTCAGTACATACGATACGTACAAAAAC
AAACCAAAGAACCGTGTGTACATCCACGTGTGTCTACACCGGCCCACAGC
CAACGATCTTTTCTTCCTTGCAGCAGGTAGATGACACAGCAGGTCTGGCT
GGCCTTTTTCTTGTCCAGCACTAAGAGAGCACTCCGTTTCCTTTCGCCGC
AAATTTCGACACGACCACTATTATTGCTGCTATCACGACGACCAACTCAT
GATCACCAGTATACCTCAAAAATGCCTCCATCCATGGCCTGTATGAATGC
AGGTGCGGAGCTTGCAAGCAAGCAAAAGGCACGCATGCATGGAGCCTCAC
TCACTCAGTACATACGATACGTACAAAAACAAACCAAAGAACCGTGTGTA
CATCCACGTGTGTCTACACCGGCCCACAGCCAACGATCTTTTCTTCCTTG
CAGCAGGTAG
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