mRNA_M-pyrifera_M_contig128004.5638.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128004.5638.1
Unique NamemRNA_M-pyrifera_M_contig128004.5638.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: UPI0018E1A904 (amidohydrolase family protein n=1 Tax=unclassified Moritella TaxID=2637987 RepID=UPI0018E1A904)

HSP 1 Score: 190 bits (483), Expect = 5.760e-56
Identity = 94/145 (64.83%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    4 PRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            P +ARK  SAQAAFKD+I NVKKF+PK GFQ D VG   A   Q  ++ YL A+FFGNF+ LKA TS  GEI+ L G V++PY EGKLGVVE GAYADLLLV+GNPLEDITVIG  +KW +A  R+G+ T+R+IMKDGKI+KN+L
Sbjct:  315 PASARKAASAQAAFKDYIANVKKFRPKLGFQGDCVGLVNACQAQNDHQIYLGAEFFGNFYYLKALTSVNGEILKLSGDVVDPYPEGKLGVVEVGAYADLLLVEGNPLEDITVIGGNEKWFDAEPRNGIDTLRVIMKDGKIYKNSL 459          
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: B0TQ58_SHEHH (Amidohydro-rel domain-containing protein n=1 Tax=Shewanella halifaxensis (strain HAW-EB4) TaxID=458817 RepID=B0TQ58_SHEHH)

HSP 1 Score: 184 bits (468), Expect = 8.750e-56
Identity = 89/146 (60.96%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 DPRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            +P +ARK ++AQAAF D+I NV K++PK GF  D VGG  A  +Q  +  YL   F GN + L + TS  GEIV L G VL+PY EGKLGVVEEGAYADLLLVDGNPL+D+TVIGA +KW +AP RDG+ T+++IMKDG I+KNTL
Sbjct:  127 NPASARKAKTAQAAFGDYIDNVNKYQPKLGFHVDCVGGVAACEQQADHSIYLSGKFLGNHYTLLSMTSVNGEIVKLAGEVLDPYFEGKLGVVEEGAYADLLLVDGNPLQDLTVIGANEKWFDAPKRDGIETMKIIMKDGVIYKNTL 272          
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: UPI0012648321 (amidohydrolase family protein n=1 Tax=Flavicella marina TaxID=1475951 RepID=UPI0012648321)

HSP 1 Score: 189 bits (481), Expect = 1.330e-55
Identity = 92/143 (64.34%), Postives = 112/143 (78.32%), Query Frame = 1
Query:   10 TARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            +ARK  SAQ AFK +I NVKK +PK GFQ D VG P+A  +Q  ++ YL A +FGN + LKA TS  GEIV L G V++PY +GKLGVVEEGAYADLLLVDGNPLEDI+VIG  +KW +AP RDG+ T+++IMKDGKI+KNTL
Sbjct:  322 SARKANSAQEAFKGYIENVKKHRPKLGFQGDCVGMPDACNKQNDHQIYLGAHYFGNHYYLKALTSVNGEIVKLSGEVMDPYPDGKLGVVEEGAYADLLLVDGNPLEDISVIGGNEKWFDAPVRDGIETMKIIMKDGKIYKNTL 464          
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: A0A2S7XEW3_9GAMM (Amidohydrolase n=2 Tax=Aliivibrio TaxID=511678 RepID=A0A2S7XEW3_9GAMM)

HSP 1 Score: 189 bits (479), Expect = 2.260e-55
Identity = 90/146 (61.64%), Postives = 112/146 (76.71%), Query Frame = 1
Query:    1 DPRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            +P +ARK ++AQAAFK++IPNVKK KPK GF  D VGG  A  +Q  +  YL  +FFGNF+ L + TS  GEIV L G  L+PY +GKLGV+EEGAYADLLLV GNPLED++VIGA  KW +AP R+G+  ++LIMKDGKI+KNTL
Sbjct:  314 NPASARKAKTAQAAFKNYIPNVKKLKPKLGFHVDCVGGVAACEQQADHSIYLSGEFFGNFYTLISMTSVNGEIVKLSGETLDPYIDGKLGVIEEGAYADLLLVKGNPLEDLSVIGANKKWFDAPKRNGIEAMKLIMKDGKIYKNTL 459          
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: UPI00200F41B1 (amidohydrolase family protein n=1 Tax=Shewanella gelidimarina TaxID=56813 RepID=UPI00200F41B1)

HSP 1 Score: 187 bits (475), Expect = 9.070e-55
Identity = 89/146 (60.96%), Postives = 112/146 (76.71%), Query Frame = 1
Query:    1 DPRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            +P +ARK  +AQAAFKD++ NV K+KP+ GF  D VGG  A  +Q  +  YL   F GN++ LK+ TST G +V L G VL+PY +GKLGVVE GAYADLLL+DGNPL+DITVIGA +KW +AP RDG+ T+R+IMKDGKI+KNTL
Sbjct:  315 NPASARKAATAQAAFKDYLDNVNKYKPQLGFHVDCVGGVFACEQQADHSIYLSGQFIGNYYTLKSMTSTNGRMVKLSGKVLDPYYKGKLGVVEVGAYADLLLIDGNPLKDITVIGANEKWFDAPKRDGIKTMRVIMKDGKIYKNTL 460          
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: A0A2S7KPX9_9FLAO (Amidohydrolase n=1 Tax=Aureitalea marina TaxID=930804 RepID=A0A2S7KPX9_9FLAO)

HSP 1 Score: 187 bits (475), Expect = 9.670e-55
Identity = 88/145 (60.69%), Postives = 114/145 (78.62%), Query Frame = 1
Query:    4 PRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            P +ARK  SAQ AF++++ NV++++PK GFQ D VG PEA  +Q  ++ YL A+FFGN + LKA TS  GEI+ L G VL+PY EGKLGV+E GAYAD+L+VDGNPLEDITVIG  +KW +AP RDG+ T+++IMKDG I+KNTL
Sbjct:  318 PASARKANSAQKAFENYLDNVRQYRPKLGFQGDCVGMPEACNKQNDHQIYLGAEFFGNHYWLKALTSVNGEILKLSGEVLDPYPEGKLGVIEVGAYADILIVDGNPLEDITVIGGNEKWFDAPVRDGIETMKVIMKDGVIYKNTL 462          
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: UPI001C7D8757 (amidohydrolase family protein n=3 Tax=Shewanella TaxID=22 RepID=UPI001C7D8757)

HSP 1 Score: 186 bits (472), Expect = 2.480e-54
Identity = 90/146 (61.64%), Postives = 111/146 (76.03%), Query Frame = 1
Query:    1 DPRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            +P +ARK ++AQAAF ++I NV K++PK GFQ D VGG  A  +Q  +  YL   F GN + L + TS  GEIV L G VL+PY EGKLGVVEEGAYADLLLVDGNPLED+TVIGA +KW +AP RDG+ T+++IMKDG I+KNTL
Sbjct:  314 NPASARKAKTAQAAFANYIENVNKYQPKLGFQVDCVGGVAACEQQADHSIYLSGKFLGNHYTLLSMTSVNGEIVKLAGEVLDPYFEGKLGVVEEGAYADLLLVDGNPLEDLTVIGANEKWFDAPKRDGIETMKIIMKDGVIYKNTL 459          
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: A0A1M7YK12_9DELT (Imidazolonepropionase n=1 Tax=Desulfopila aestuarii DSM 18488 TaxID=1121416 RepID=A0A1M7YK12_9DELT)

HSP 1 Score: 185 bits (470), Expect = 1.880e-53
Identity = 87/145 (60.00%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    4 PRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            P +ARK  SAQ A  +F+ NVKKF+PKFGF  D +GG +  ++Q  Y  YL    FGN   LK+ TS  GEIV L G VL+PY EG LGV+E GAYAD+L+VDGNPLED+  IGA +KW +AP RDG+ TIR+IMKDGKI+KNTL
Sbjct:  383 PISARKANSAQVATANFVENVKKFQPKFGFNTDAIGGVQLGIKQTDYSIYLSGQLFGNLFTLKSLTSVNGEIVKLAGEVLDPYFEGSLGVIEVGAYADILIVDGNPLEDLKAIGANEKWFDAPDRDGIETIRIIMKDGKIYKNTL 527          
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: A0A2N7GGI2_9VIBR (Amidohydrolase n=2 Tax=unclassified Vibrio TaxID=2614977 RepID=A0A2N7GGI2_9VIBR)

HSP 1 Score: 182 bits (463), Expect = 5.350e-53
Identity = 86/146 (58.90%), Postives = 111/146 (76.03%), Query Frame = 1
Query:    1 DPRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            +P +ARK ++AQAAF D+I NV ++KPK GF  D VGG  A  +Q  +  +L   FFGNF+ L + TS  GEIV L G  L+PY EG LGV+E GAYAD+LLV+GNPLED++VIGA +KW +AP+RDG+ T++LIMKDGKI+KNTL
Sbjct:  314 NPASARKAKTAQAAFSDYIDNVNEYKPKLGFHVDCVGGVAACEQQADHSIFLSGKFFGNFYTLISMTSVNGEIVKLSGETLDPYFEGSLGVIEVGAYADILLVEGNPLEDLSVIGANEKWFDAPARDGIETMKLIMKDGKIYKNTL 459          
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Match: A0A2N1A084_9GAMM (Amidohydrolase n=1 Tax=Psychromonas sp. Urea-02u-13 TaxID=2058326 RepID=A0A2N1A084_9GAMM)

HSP 1 Score: 182 bits (462), Expect = 8.880e-53
Identity = 86/145 (59.31%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    4 PRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEKYLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADLLLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTL 438
            P  +RK ++AQA FKD++ NV K++PK GF  D VGG     +Q  +  YL  +F GN++ LK+ TST GEIV L G VL+PY + KLGVV +GAYADLLLVDGNPLED+TVIGA  KW +AP+RD + T+R+IMKDGKI+KNTL
Sbjct:  323 PAASRKAETAQATFKDYLKNVNKYQPKLGFHVDCVGGVATCEQQADHSIYLSGEFIGNYYTLKSMTSTNGEIVKLTGSVLDPYFQAKLGVVAKGAYADLLLVDGNPLEDLTVIGANKKWFDAPARDEIKTMRVIMKDGKIYKNTL 467          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128004.5638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018E1A9045.760e-5664.83amidohydrolase family protein n=1 Tax=unclassified... [more]
B0TQ58_SHEHH8.750e-5660.96Amidohydro-rel domain-containing protein n=1 Tax=S... [more]
UPI00126483211.330e-5564.34amidohydrolase family protein n=1 Tax=Flavicella m... [more]
A0A2S7XEW3_9GAMM2.260e-5561.64Amidohydrolase n=2 Tax=Aliivibrio TaxID=511678 Rep... [more]
UPI00200F41B19.070e-5560.96amidohydrolase family protein n=1 Tax=Shewanella g... [more]
A0A2S7KPX9_9FLAO9.670e-5560.69Amidohydrolase n=1 Tax=Aureitalea marina TaxID=930... [more]
UPI001C7D87572.480e-5461.64amidohydrolase family protein n=3 Tax=Shewanella T... [more]
A0A1M7YK12_9DELT1.880e-5360.00Imidazolonepropionase n=1 Tax=Desulfopila aestuari... [more]
A0A2N7GGI2_9VIBR5.350e-5358.90Amidohydrolase n=2 Tax=unclassified Vibrio TaxID=2... [more]
A0A2N1A084_9GAMM8.880e-5359.31Amidohydrolase n=1 Tax=Psychromonas sp. Urea-02u-1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128004contigM-pyrifera_M_contig128004:12..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score185.3
Seed ortholog evalue2.1e-44
Seed eggNOG ortholog398579.Spea_3014
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Amidohydrolase family
EggNOG OGs1MVAF@1224,1RQRP@1236,2QAVX@267890,COG1228@1,COG1228@2
COG Functional cat.Q
Best tax levelShewanellaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.9604278-CDS-M-pyrifera_M_contig128004:11..4551622815793.9604278-CDS-M-pyrifera_M_contig128004:11..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128004 12..455 +
1692277572.5677066-CDS-M-pyrifera_M_contig128004:11..4551692277572.5677066-CDS-M-pyrifera_M_contig128004:11..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128004 12..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128004.5638.1prot_M-pyrifera_M_contig128004.5638.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128004 12..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128004.5638.1

>prot_M-pyrifera_M_contig128004.5638.1 ID=prot_M-pyrifera_M_contig128004.5638.1|Name=mRNA_M-pyrifera_M_contig128004.5638.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
DPRTARKLQSAQAAFKDFIPNVKKFKPKFGFQADVVGGPEATVRQIGYEK
YLHADFFGNFHMLKAATSTAGEIVALCGPVLNPYAEGKLGVVEEGAYADL
LLVDGNPLEDITVIGAVDKWHNAPSRDGVTTIRLIMKDGKIHKNTLP*
back to top

mRNA from alignment at M-pyrifera_M_contig128004:12..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128004.5638.1 ID=mRNA_M-pyrifera_M_contig128004.5638.1|Name=mRNA_M-pyrifera_M_contig128004.5638.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig128004:12..455+ (Macrocystis pyrifera P11B4 male)
GACCCGCGGACGGCTCGCAAGCTACAGTCTGCCCAGGCAGCGTTCAAAGA CTTCATTCCAAATGTAAAGAAGTTCAAGCCGAAGTTCGGGTTTCAAGCAG ATGTCGTGGGAGGGCCAGAGGCAACGGTTAGGCAAATTGGGTACGAGAAG TACCTCCATGCTGACTTCTTCGGCAACTTTCACATGTTGAAAGCCGCGAC CTCAACCGCTGGTGAAATCGTGGCGCTGTGTGGTCCTGTGCTTAACCCGT ACGCCGAAGGCAAGCTCGGGGTTGTGGAGGAGGGGGCATATGCTGACTTA CTCCTCGTCGATGGAAATCCGCTGGAGGACATCACGGTGATCGGGGCCGT CGACAAATGGCATAACGCGCCCTCTCGTGATGGGGTCACGACAATCCGTC TCATCATGAAGGATGGCAAGATTCACAAGAACACTTTGCCATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig128004:12..455+

>mRNA_M-pyrifera_M_contig128004.5638.1 ID=mRNA_M-pyrifera_M_contig128004.5638.1|Name=mRNA_M-pyrifera_M_contig128004.5638.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig128004:12..455+ (Macrocystis pyrifera P11B4 male)
GACCCGCGGACGGCTCGCAAGCTACAGTCTGCCCAGGCAGCGTTCAAAGA
CTTCATTCCAAATGTAAAGAAGTTCAAGCCGAAGTTCGGGTTTCAAGCAG
ATGTCGTGGGAGGGCCAGAGGCAACGGTTAGGCAAATTGGGTACGAGAAG
TACCTCCATGCTGACTTCTTCGGCAACTTTCACATGTTGAAAGCCGCGAC
CTCAACCGCTGGTGAAATCGTGGCGCTGTGTGGTCCTGTGCTTAACCCGT
ACGCCGAAGGCAAGCTCGGGGTTGTGGAGGAGGGGGCATATGCTGACTTA
CTCCTCGTCGATGGAAATCCGCTGGAGGACATCACGGTGATCGGGGCCGT
CGACAAATGGCATAACGCGCCCTCTCGTGATGGGGTCACGACAATCCGTC
TCATCATGAAGGATGGCAAGATTCACAAGAACACTTTGCCATAGGACCCG
CGGACGGCTCGCAAGCTACAGTCTGCCCAGGCAGCGTTCAAAGACTTCAT
TCCAAATGTAAAGAAGTTCAAGCCGAAGTTCGGGTTTCAAGCAGATGTCG
TGGGAGGGCCAGAGGCAACGGTTAGGCAAATTGGGTACGAGAAGTACCTC
CATGCTGACTTCTTCGGCAACTTTCACATGTTGAAAGCCGCGACCTCAAC
CGCTGGTGAAATCGTGGCGCTGTGTGGTCCTGTGCTTAACCCGTACGCCG
AAGGCAAGCTCGGGGTTGTGGAGGAGGGGGCATATGCTGACTTACTCCTC
GTCGATGGAAATCCGCTGGAGGACATCACGGTGATCGGGGCCGTCGACAA
ATGGCATAACGCGCCCTCTCGTGATGGGGTCACGACAATCCGTCTCATCA
TGAAGGATGGCAAGATTCACAAGAACACTTTGCCATAG
back to top