mRNA_M-pyrifera_M_contig127997.5636.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127997.5636.1
Unique NamemRNA_M-pyrifera_M_contig127997.5636.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: R7QK80_CHOCR (Lipase_3 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK80_CHOCR)

HSP 1 Score: 89.4 bits (220), Expect = 1.620e-18
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 GGGFGCPKHWLVADPAKKRLVLCIRGTMSVADALTDLLASETPFAGGRSHEGMVAAAQNIFSAISLGTPKIPGMRLQTLLAETFPGYGLALTGHSLGGGVATLVTVLLL 327
            G G   P+H++  D  +K +V+ IRGT S++D +TDLL    PFAGG +H GM  AA+++++AI      +P +R  + LA+ +P Y +A+TGHSLG GVA L+T +LL
Sbjct:  295 GEGIRAPRHFVAVDEREKSIVVAIRGTNSISDIITDLLCDNEPFAGGYAHGGMKRAAESLYTAI------LPTLR--SALAK-YPSYIIAVTGHSLGAGVAILLTKVLL 394          
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: A0A813BTW0_9DINO (Dagla protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BTW0_9DINO)

HSP 1 Score: 85.5 bits (210), Expect = 2.470e-17
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   19 PKHWLVADPAKKRL-------VLCIRGTMSVADALTDLLASETPFAGGRSHEGMVAAAQNIFSAISLGTP-KIPGMRLQTLLAETFPGYGLALTGHSLGGGVATLVTVLLL 327
            P HWLV D  ++ L           RGT++V DA+ DL A+  PF  G++HEGM AAA  + ++   G    +PG RL++L     PGYGL LTGHSLGG VA L+T+LLL
Sbjct:  164 PHHWLVVDHERRELDPHHTPPYTACRGTINVDDAVMDLTATAVPFLRGQAHEGMAAAAHKLHASCFSGDRLNLPG-RLESL-----PGYGLVLTGHSLGGSVAVLLTMLLL 268          
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: A0A5A8E4W4_CAFRO (Lipase_3 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E4W4_CAFRO)

HSP 1 Score: 84.7 bits (208), Expect = 4.650e-17
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   19 PKHWLVADPAKKRLVLCIRGTMSVADALTDLLASETPFAGGRSHEGMVAAAQNIFSAISLGTPKIPGMRLQTLLAETFPGYGLALTGHSLGGGVATLV 312
            P H+LV D  +K L+L +RGT+S AD +TD++A + PF GG++HE M  +A  +++++    P    M L   L +  PGY  AL GHSLGGGVA+L+
Sbjct:   37 PAHFLVRDSDRKLLILVVRGTISEADVVTDVVAGDAPFLGGQAHEAMARSANALYASLMTAGPG--NMDLAGHLQD-HPGYSFALAGHSLGGGVASLL 131          
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: A0A830H6S4_9CHLO (Lipase_3 domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H6S4_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.920e-17
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   16 CPKHWLVADPAKKRLVLCIRGTMSVADALT-DLLASETPFAGGRSHEGMVAAAQNIFSAISLGTPKIPGMRLQTLLAETFPGYGLALTGHSLGGGVATLVTVLLL 327
            CP+H++  D + + +VL IRGT S++DAL  DL+A   PF GGR+H GM  AA+ +             M       E  PGYGL +TGHS+GGG A L+T L+L
Sbjct:  233 CPRHFVAVDRSTRSVVLAIRGTASISDALCHDLVAVAEPFCGGRAHHGMALAARELHRQ---------AMPAVVDALEAHPGYGLVVTGHSMGGGAAALLTTLIL 328          
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: A0A482RK55_9ARCH (Lipase_3 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RK55_9ARCH)

HSP 1 Score: 80.5 bits (197), Expect = 2.110e-15
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   10 FGCPKHWLVADPAKKRLVLCIRGTMSVADALTDLLASETPFAGGRSHEGMVAAAQNIFSAISLGTPKIPGMRLQTLLAETF--PGYGLALTGHSLGGGVATLVTVLL 324
             G PKH++V D A K +VL IRGTMS+ DALTDL+A    F  G +HEG+   A  I+ ++           L  L  E    PG+ L +TGHSLG   A L T+LL
Sbjct:   71 IGIPKHFVVLDEASKSVVLAIRGTMSLNDALTDLVARHVDFCDGEAHEGIAHGAHAIYHSV-----------LDVLQRELQLRPGWSLVVTGHSLGAATAILFTILL 166          
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: A0A2V3IYH3_9FLOR (Sn1-specific diacylglycerol lipase alpha n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYH3_9FLOR)

HSP 1 Score: 79.7 bits (195), Expect = 3.840e-15
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 GGGFGCPKHWLVADPAKKRLVLCIRGTMSVADALTDLLASETPFAGGRSHEGMVAAAQNIFSAISLGTPKIPGMRLQTLLAETFPGYGLALTGHSLGGGVATLVTVLLL 327
            G     P+H++  D   + +V+ IRGT S++D +TDLL    PFAGG +H GM  A++ +++++      +P +R  ++    +  + + +TGHSLGGGVA L+T +LL
Sbjct:  254 GERISVPRHFVALDEKHRSIVIAIRGTNSISDVITDLLCENEPFAGGYAHRGMKKASEALYTSL------LPTLRTASI---KYRNHSIVVTGHSLGGGVAVLLTKILL 353          
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: A0A7S1CEC2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEC2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.330e-14
Identity = 49/106 (46.23%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   19 PKHWLVADPAKKRLVLCIRGTMSVADALTDLLASETPFAGGRSHEGMVAAAQ----NIFSAISLGTPKIPGMRLQTLLAETFPGYGLALTGHSLGGGVATLVTVLL 324
            P   LV D  KK++VL IRGT SV+DA+TD  A+  PFAG  +H GMV AAQ    NI   I             T     +P  GL +TGHSLG G A L+T+LL
Sbjct:  128 PVFALVHDAGKKKIVLAIRGTHSVSDAMTDACAAAEPFAGDTAHRGMVRAAQWFIDNILEDI-------------TGALARYPDCGLLVTGHSLGAGTAALLTILL 220          
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: A0A7S0DSP5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DSP5_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 2.810e-14
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 GGGFG-CPKHWLVADPAKKRLVLCIRGTMSVADALTDLLASETPFAGGRSHEGMVAAAQNIFSAISLGTPKIPGMRLQTLLAETFPGYGLALTGHSLGGGVATLVTVLLL 327
            G  FG CP H++  D   K +VL IRGT +VADALTDLL       GG +H+G+V +A   F+ +S     I    +++L     PGY L +TGHSLG GV+ + ++LLL
Sbjct:   22 GRPFGLCPLHFVAIDDQTKSVVLSIRGTATVADALTDLLCDRRGILGGYAHDGIVRSA---FAVLSSAEDAI----IESLSKN--PGYRLVITGHSLGAGVSIMASLLLL 122          
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: A0A7S2TJX1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJX1_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 6.340e-14
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   16 CPKHWLVADPAKKRLVLCIRGTMSVADALTDLLASETPFAGGRSHEGMVAAAQNIFSAISLGTPKIPGMRLQTLLAETFPGYGLALTGHSLGGGVATLVTVLL 324
            CP H++  D   K ++L IRGT S++DALTDLL +     GG +H+G++ +A  +   +S         RL  +L +  PG+ L +TGHSLGGGVA ++ +LL
Sbjct:  247 CPMHFVAIDSETKAVILSIRGTASLSDALTDLLCAPRKMLGGVAHDGILRSAFAVLGHVSA--------RLVEILRD-HPGFKLVVTGHSLGGGVALVLALLL 340          
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Match: A0A7S3FHY2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FHY2_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 1.140e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    4 GGFGCPKHWLVADPAKKRLVLCIRGTMSVADALTDLLASETPFAGGRSHEGMVAAAQNIFSAISLGTPKIPGMRLQTLLAETFPGYGLALTGHSLGGGVATLVTVLL 324
            G   C +H++  + +   +VL +RGT SV+DA+ D++A   PF GG +H GM   A+N+++A        P +  Q    E   GYGL + GHSLG GVA L+T+ L
Sbjct:  202 GDADCLRHFVAVNHSTSAIVLALRGTASVSDAIHDVVAYAEPFCGGSAHAGMARMARNVWAAAG------PAVVEQLASNE---GYGLVICGHSLGAGVAALLTLYL 299          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127997.5636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QK80_CHOCR1.620e-1844.95Lipase_3 domain-containing protein n=1 Tax=Chondru... [more]
A0A813BTW0_9DINO2.470e-1746.85Dagla protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A5A8E4W4_CAFRO4.650e-1744.90Lipase_3 domain-containing protein n=2 Tax=Cafeter... [more]
A0A830H6S4_9CHLO4.920e-1743.81Lipase_3 domain-containing protein n=1 Tax=Pycnoco... [more]
A0A482RK55_9ARCH2.110e-1543.93Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
A0A2V3IYH3_9FLOR3.840e-1536.70Sn1-specific diacylglycerol lipase alpha n=1 Tax=G... [more]
A0A7S1CEC2_9STRA2.330e-1446.23Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0DSP5_9EUKA2.810e-1443.64Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S2TJX1_9EUKA6.340e-1440.78Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3FHY2_9EUKA1.140e-1339.25Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127997contigM-pyrifera_M_contig127997:18..344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue4.1e-13
Seed eggNOG ortholog5786.XP_003286092.1
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006828,GO:0006873,GO:0006950,GO:0006970,GO:0008150,GO:0008324,GO:0009628,GO:0009651,GO:0009987,GO:0012505,GO:0012506,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015318,GO:0015672,GO:0016020,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030659,GO:0031090,GO:0031410,GO:0031982,GO:0034220,GO:0035725,GO:0042592,GO:0043157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071421,GO:0071804,GO:0071805,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805
EggNOG free text desc.Lipase (class 3)
EggNOG OGs3X8WM@554915,KOG2088@1,KOG2088@2759
COG Functional cat.IOT
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.888905-CDS-M-pyrifera_M_contig127997:17..3441622815793.888905-CDS-M-pyrifera_M_contig127997:17..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127997 18..344 +
1692277572.5418382-CDS-M-pyrifera_M_contig127997:17..3441692277572.5418382-CDS-M-pyrifera_M_contig127997:17..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127997 18..344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127997.5636.1prot_M-pyrifera_M_contig127997.5636.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127997 18..344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127997.5636.1

>prot_M-pyrifera_M_contig127997.5636.1 ID=prot_M-pyrifera_M_contig127997.5636.1|Name=mRNA_M-pyrifera_M_contig127997.5636.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
GGGFGCPKHWLVADPAKKRLVLCIRGTMSVADALTDLLASETPFAGGRSH
EGMVAAAQNIFSAISLGTPKIPGMRLQTLLAETFPGYGLALTGHSLGGGV
ATLVTVLLL
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mRNA from alignment at M-pyrifera_M_contig127997:18..344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127997.5636.1 ID=mRNA_M-pyrifera_M_contig127997.5636.1|Name=mRNA_M-pyrifera_M_contig127997.5636.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig127997:18..344+ (Macrocystis pyrifera P11B4 male)
GGTGGTGGGTTTGGATGTCCCAAACATTGGCTAGTTGCTGACCCAGCAAA GAAACGCCTGGTTCTCTGTATTCGAGGCACGATGAGTGTTGCAGATGCAC TGACAGATCTTCTTGCTTCTGAAACCCCATTTGCTGGTGGAAGGTCACAC GAAGGAATGGTGGCAGCAGCACAGAACATCTTCTCGGCCATCTCCCTTGG CACACCAAAAATTCCAGGGATGCGACTACAAACACTGCTGGCTGAGACAT TCCCAGGCTATGGCCTCGCACTCACTGGACATTCCTTGGGTGGAGGCGTT GCTACCCTGGTCACAGTGCTGCTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127997:18..344+

>mRNA_M-pyrifera_M_contig127997.5636.1 ID=mRNA_M-pyrifera_M_contig127997.5636.1|Name=mRNA_M-pyrifera_M_contig127997.5636.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig127997:18..344+ (Macrocystis pyrifera P11B4 male)
GGTGGTGGGTTTGGATGTCCCAAACATTGGCTAGTTGCTGACCCAGCAAA
GAAACGCCTGGTTCTCTGTATTCGAGGCACGATGAGTGTTGCAGATGCAC
TGACAGATCTTCTTGCTTCTGAAACCCCATTTGCTGGTGGAAGGTCACAC
GAAGGAATGGTGGCAGCAGCACAGAACATCTTCTCGGCCATCTCCCTTGG
CACACCAAAAATTCCAGGGATGCGACTACAAACACTGCTGGCTGAGACAT
TCCCAGGCTATGGCCTCGCACTCACTGGACATTCCTTGGGTGGAGGCGTT
GCTACCCTGGTCACAGTGCTGCTGCTCGGTGGTGGGTTTGGATGTCCCAA
ACATTGGCTAGTTGCTGACCCAGCAAAGAAACGCCTGGTTCTCTGTATTC
GAGGCACGATGAGTGTTGCAGATGCACTGACAGATCTTCTTGCTTCTGAA
ACCCCATTTGCTGGTGGAAGGTCACACGAAGGAATGGTGGCAGCAGCACA
GAACATCTTCTCGGCCATCTCCCTTGGCACACCAAAAATTCCAGGGATGC
GACTACAAACACTGCTGGCTGAGACATTCCCAGGCTATGGCCTCGCACTC
ACTGGACATTCCTTGGGTGGAGGCGTTGCTACCCTGGTCACAGTGCTGCT
GCTC
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