mRNA_M-pyrifera_M_contig127992.5633.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A6P8FVE7_CLUHA (DNA repair protein RAD51 homolog 3 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8FVE7_CLUHA) HSP 1 Score: 66.6 bits (161), Expect = 5.820e-11 Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 270
T + +L +VRC D L+A C L D LTK+P ++LV++DS+AFPFRH ++ L+ ++++L + A +H VA+V NQ+TT
Sbjct: 145 TVENILSRLWLVRCHDYVELLAHCYLLPDFLTKHPEVQLVVIDSIAFPFRHDFEDFSQRTRLLNGLAQQLIQLATEHSVAVVLTNQMTT 233
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A8M1KDU3_CLUHA (LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog 3-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KDU3_CLUHA) HSP 1 Score: 66.6 bits (161), Expect = 6.630e-11 Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 270
T + +L +VRC D L+A C L D LTK+P ++LV++DS+AFPFRH ++ L+ ++++L + A +H VA+V NQ+TT
Sbjct: 183 TVENILSRLWLVRCHDYVELLAHCYLLPDFLTKHPEVQLVVIDSIAFPFRHDFEDFSQRTRLLNGLAQQLIQLATEHSVAVVLTNQMTT 271
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A5N5LKG9_PANHP (RECA_2 domain-containing protein n=5 Tax=Siluroidei TaxID=1489793 RepID=A0A5N5LKG9_PANHP) HSP 1 Score: 65.9 bits (159), Expect = 1.240e-10 Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 13 DEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRA-RAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
+++L +VRC D L+A L D L K P +RLV++DSVAFPFRH L + R L S++L + +HG A+V NQ+TT
Sbjct: 186 EKILSGVFLVRCQDHTELLAELHLLHDFLRKRPQVRLVVIDSVAFPFRHELEDLSHRTRILTGFSQQLTHLSAQHGAAVVLTNQMTT 272
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: UPI001BFB52DF (DNA repair protein RAD51 homolog 3 isoform X1 n=2 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001BFB52DF) HSP 1 Score: 65.5 bits (158), Expect = 1.730e-10 Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 270
T + +L +VRC D L+A C L D LTK+P ++LV++DS+AFPFRH ++ L+ ++++L + A ++ VA+V NQ+TT
Sbjct: 189 TVENILSRLSLVRCHDYVELLAHCYLLPDFLTKHPEVQLVVIDSIAFPFRHDFEDFSQRTRLLNGLAQQLIQLATEYNVAVVLTNQMTT 277
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A8J4T8E0_CLAMG (DNA repair protein RAD51 3 n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4T8E0_CLAMG) HSP 1 Score: 63.2 bits (152), Expect = 1.030e-9 Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRA-RAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
T +++L +VRC D L+A L D L K P +RLV++DSVAFPFRH L + R L ++ L R + +H A+V NQ+TT
Sbjct: 184 TVEKILSGVFLVRCQDHVALLAELHLLHDFLRKRPQVRLVVIDSVAFPFRHCLEDLSHRTRLLTGLALRLARISAQHTAAVVLTNQMTT 272
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: UPI001FEDF698 (DNA repair protein RAD51 homolog 3 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEDF698) HSP 1 Score: 62.8 bits (151), Expect = 1.550e-9 Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLVA-VSRELKRNAM-KHGVAIVAINQVTT 270
T +++L +VRC D L+A L D L K P +RLV++DSVAFPFRH L ++ L++ S+++ R A +HG A+V NQ+TT
Sbjct: 184 TVEKILSGVFLVRCHDHVALLAELHLLPDFLRKRPQVRLVVIDSVAFPFRHELEDVSQRTRLLSGFSQQVTRLASAQHGPAVVLTNQMTT 273
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A5A9N1Y8_9TELE (DNA repair protein RAD51-like protein 3 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9N1Y8_9TELE) HSP 1 Score: 62.4 bits (150), Expect = 2.130e-9 Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSL-NPRARAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
T +++L + +VRC D L+A L D L ++P +RLVI+DS+AFPFRH N R L ++++L R A +H VA+V N +TT
Sbjct: 183 TVEKVLSSFFLVRCHDYVELLAEVYLLPDFLAEHPEVRLVIIDSIAFPFRHDFENLSQRTRLLNGLAQQLIRIATQHSVAVVLSNHMTT 271
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A6J2WUW8_CHACN (DNA repair protein RAD51 homolog 3 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WUW8_CHACN) HSP 1 Score: 62.0 bits (149), Expect = 2.920e-9 Identity = 33/89 (37.08%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 270
T +++L ++RC D L+A L + L ++P++RLV++DS+AFPFRH ++ L+ ++++L + A KH VA+V NQ+TT
Sbjct: 183 TVEKILSNLFLIRCHDYVELLAEIYLLPEFLAQHPDVRLVVIDSIAFPFRHDFEDLSQRTRLLNGLAQQLIQMATKHSVAVVLTNQMTT 271
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: UPI00071C7F40 (DNA repair protein RAD51 homolog 3-like isoform X2 n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=UPI00071C7F40) HSP 1 Score: 61.6 bits (148), Expect = 3.880e-9 Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNP-RARAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
TTD++L RC D L+A+ L +++ P ++LVI+DS+AF FRH R R L +++ L + A KH +A+V NQ+TT
Sbjct: 157 TTDQVLNGIHYFRCRDYVELLAIIHLLSELIKDRPKVKLVIIDSIAFHFRHDFEDIRLRTCLLTTIAQSLIQIANKHTLAVVLTNQMTT 245
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A0L8FWN0_OCTBM (RECA_2 domain-containing protein n=3 Tax=Octopus TaxID=6643 RepID=A0A0L8FWN0_OCTBM) HSP 1 Score: 61.6 bits (148), Expect = 4.050e-9 Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNP-RARAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
TTD++L RC D L+A+ L +++ P ++LVI+DS+AF FRH R R L +++ L + A KH +A+V NQ+TT
Sbjct: 183 TTDQVLNGIHYFRCRDYVELLAIIHLLSELIKDRPKVKLVIIDSIAFHFRHDFEDIRLRTCLLTTIAQSLIQIANKHTLAVVLTNQMTT 271 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig127992.5633.1 >prot_M-pyrifera_M_contig127992.5633.1 ID=prot_M-pyrifera_M_contig127992.5633.1|Name=mRNA_M-pyrifera_M_contig127992.5633.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNback to top mRNA from alignment at M-pyrifera_M_contig127992:84..353+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig127992.5633.1 ID=mRNA_M-pyrifera_M_contig127992.5633.1|Name=mRNA_M-pyrifera_M_contig127992.5633.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig127992:84..353+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig127992:84..353+ >mRNA_M-pyrifera_M_contig127992.5633.1 ID=mRNA_M-pyrifera_M_contig127992.5633.1|Name=mRNA_M-pyrifera_M_contig127992.5633.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig127992:84..353+ (Macrocystis pyrifera P11B4 male)back to top |