mRNA_M-pyrifera_M_contig127971.5630.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127971.5630.1
Unique NamemRNA_M-pyrifera_M_contig127971.5630.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A560J4M7_9PROT (TetR family transcriptional regulator n=4 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A560J4M7_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 1.090e-7
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 RARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVL 180
            R R+ SA RRA ++EAA RVFA+ G+DGA T  IA  A  +E +++RHFPSK  L R VL
Sbjct:    3 RKRLLSADRRALILEAAIRVFAEHGFDGAKTHRIAAEAQVSEALIFRHFPSKETLYRSVL 62          
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: UPI0019BD282D (TetR/AcrR family transcriptional regulator n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=UPI0019BD282D)

HSP 1 Score: 55.1 bits (131), Expect = 2.010e-7
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 RARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVL 180
            R R+  + RR  ++ AARR FA AGY GASTA IA AA C+E +LY+HF  K  L  E L
Sbjct:   28 RPRMTGSQRRQVILAAARREFARAGYHGASTARIAQAAGCSEPMLYKHFSGKQALFAETL 87          
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A1W9I986_9PROT (TetR family transcriptional regulator n=1 Tax=Proteobacteria bacterium SG_bin9 TaxID=1827385 RepID=A0A1W9I986_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 2.980e-7
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    7 RVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVLA 183
            R+PS +RR Q+++AA+R FA  GY G +T ++A AA  +E +L++HFP+K  L  E+LA
Sbjct:    5 RLPSDLRREQIMDAAKRCFARHGYAGTTTRSVAAAAGISEGLLFKHFPTKAALYAEILA 63          
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A849BU23_9ACTN (TetR/AcrR family transcriptional regulator n=2 Tax=Pseudokineococcus marinus TaxID=351215 RepID=A0A849BU23_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 1.010e-6
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    4 ARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSK 156
            AR+  A RRAQL+ AA+RVFA AGY G+   AIA+ A   + VLYRHFP K
Sbjct:   26 ARLGRADRRAQLLRAAQRVFARAGYHGSGMDAIAERAGITKPVLYRHFPGK 76          
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A7H8HM28_9PSEU (TetR/AcrR family transcriptional regulator n=1 Tax=Amycolatopsis sp. Hca4 TaxID=2742131 RepID=A0A7H8HM28_9PSEU)

HSP 1 Score: 52.0 bits (123), Expect = 2.210e-6
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    7 RVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVLAA 186
            R+ +  RRA ++E A  VFA+ GYDGA    IA  +  +  VLY HFPSK+ L +EVLAA
Sbjct:    8 RMSAEKRRAVIVENATEVFAERGYDGAPVDEIARRSGISAPVLYDHFPSKLALFQEVLAA 67          
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A2N1TH15_9SPIR (HTH tetR-type domain-containing protein n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-1 TaxID=2013832 RepID=A0A2N1TH15_9SPIR)

HSP 1 Score: 52.0 bits (123), Expect = 2.930e-6
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    7 RVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVLA 183
            R+ +  RR ++IEAA+ +FAD G++G S   IA AAD +  +LY+HFPSK  +  E+L+
Sbjct:    6 RINAEERRQRIIEAAKPLFADFGFNGTSIRDIAKAADVSNALLYKHFPSKEAMYEEILS 64          
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A511D5P9_9PSEU (TetR family transcriptional regulator n=1 Tax=Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 TaxID=1123024 RepID=A0A511D5P9_9PSEU)

HSP 1 Score: 51.2 bits (121), Expect = 4.740e-6
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    4 ARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVL 180
            AR+    RRAQL+ AAR VFAD GY  A+   IA+ A  ++ VLY+HFP K+ L R +L
Sbjct:   13 ARLSRTARRAQLLVAARDVFADLGYHAAAMDDIAERAGVSKPVLYQHFPGKLELYRALL 71          
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A0Q8M6C0_9CAUL (TetR family transcriptional regulator n=1 Tax=Phenylobacterium sp. Root700 TaxID=1736591 RepID=A0A0Q8M6C0_9CAUL)

HSP 1 Score: 51.2 bits (121), Expect = 4.860e-6
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   22 VRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREV 177
            +RRA+++EAA R+F   GYDGA+   IAD    + T LY HFP K  +L E+
Sbjct:   20 LRRAEILEAAERIFVAEGYDGATIRKIADEVGVSSTALYMHFPDKSCILLEI 71          
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A2W5NXC1_9CAUL (TetR/AcrR family transcriptional regulator n=1 Tax=Phenylobacterium zucineum TaxID=284016 RepID=A0A2W5NXC1_9CAUL)

HSP 1 Score: 51.2 bits (121), Expect = 4.860e-6
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   22 VRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREV 177
            +RRA+++EAA+R+F   GY+GA+   IAD    + T LY HFP K  +L E+
Sbjct:   21 LRRAEILEAAQRIFVAEGYEGATIRKIADEVGVSSTALYMHFPDKACILHEI 72          
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A8I0FUT4_9ACTN (TetR/AcrR family transcriptional regulator n=2 Tax=Aeromicrobium tamlense TaxID=375541 RepID=A0A8I0FUT4_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 5.090e-6
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   25 RRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSK 156
            RRAQ+IE+ARRVFA++GY    T  IA  A   E +LYRHFPSK
Sbjct:   16 RRAQIIESARRVFAESGYAATRTREIAAEAGVNEAMLYRHFPSK 59          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A560J4M7_9PROT1.090e-755.00TetR family transcriptional regulator n=4 Tax=Nitr... [more]
UPI0019BD282D2.010e-753.33TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A1W9I986_9PROT2.980e-747.46TetR family transcriptional regulator n=1 Tax=Prot... [more]
A0A849BU23_9ACTN1.010e-658.82TetR/AcrR family transcriptional regulator n=2 Tax... [more]
A0A7H8HM28_9PSEU2.210e-650.00TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A2N1TH15_9SPIR2.930e-645.76HTH tetR-type domain-containing protein n=1 Tax=Sp... [more]
A0A511D5P9_9PSEU4.740e-650.85TetR family transcriptional regulator n=1 Tax=Pseu... [more]
A0A0Q8M6C0_9CAUL4.860e-648.08TetR family transcriptional regulator n=1 Tax=Phen... [more]
A0A2W5NXC1_9CAUL4.860e-646.15TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A8I0FUT4_9ACTN5.090e-661.36TetR/AcrR family transcriptional regulator n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127971contigM-pyrifera_M_contig127971:8..202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.2
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog279238.Saro_3709
Preferred nameacrR
KEGG koko:K09017
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bacterial regulatory proteins, tetR family
EggNOG OGs1MUE2@1224,2KAD5@204457,2TT72@28211,COG1309@1,COG1309@2
COG Functional cat.K
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.6228142-CDS-M-pyrifera_M_contig127971:7..2021622815793.6228142-CDS-M-pyrifera_M_contig127971:7..202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127971 8..202 +
1692277572.4366477-CDS-M-pyrifera_M_contig127971:7..2021692277572.4366477-CDS-M-pyrifera_M_contig127971:7..202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127971 8..202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127971.5630.1prot_M-pyrifera_M_contig127971.5630.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127971 8..202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127971.5630.1

>prot_M-pyrifera_M_contig127971.5630.1 ID=prot_M-pyrifera_M_contig127971.5630.1|Name=mRNA_M-pyrifera_M_contig127971.5630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
RARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFP
SKIILLREVLAAIRV
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mRNA from alignment at M-pyrifera_M_contig127971:8..202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127971.5630.1 ID=mRNA_M-pyrifera_M_contig127971.5630.1|Name=mRNA_M-pyrifera_M_contig127971.5630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig127971:8..202+ (Macrocystis pyrifera P11B4 male)
CGCGCGCGGGTGCCGTCGGCGGTGCGCCGGGCACAGCTGATCGAGGCCGC CCGGCGGGTGTTCGCCGACGCCGGCTACGACGGCGCGAGCACCGCCGCGA TCGCCGACGCGGCGGACTGCGCCGAGACGGTCCTGTACCGCCACTTCCCC TCGAAGATCATCCTGCTGCGCGAGGTCCTCGCGGCGATCCGCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127971:8..202+

>mRNA_M-pyrifera_M_contig127971.5630.1 ID=mRNA_M-pyrifera_M_contig127971.5630.1|Name=mRNA_M-pyrifera_M_contig127971.5630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig127971:8..202+ (Macrocystis pyrifera P11B4 male)
CGCGCGCGGGTGCCGTCGGCGGTGCGCCGGGCACAGCTGATCGAGGCCGC
CCGGCGGGTGTTCGCCGACGCCGGCTACGACGGCGCGAGCACCGCCGCGA
TCGCCGACGCGGCGGACTGCGCCGAGACGGTCCTGTACCGCCACTTCCCC
TCGAAGATCATCCTGCTGCGCGAGGTCCTCGCGGCGATCCGCGTCCGCGC
GCGGGTGCCGTCGGCGGTGCGCCGGGCACAGCTGATCGAGGCCGCCCGGC
GGGTGTTCGCCGACGCCGGCTACGACGGCGCGAGCACCGCCGCGATCGCC
GACGCGGCGGACTGCGCCGAGACGGTCCTGTACCGCCACTTCCCCTCGAA
GATCATCCTGCTGCGCGAGGTCCTCGCGGCGATCCGCGTC
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