mRNA_M-pyrifera_M_contig127971.5630.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A560J4M7_9PROT (TetR family transcriptional regulator n=4 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A560J4M7_9PROT) HSP 1 Score: 55.8 bits (133), Expect = 1.090e-7 Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 1 RARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVL 180
R R+ SA RRA ++EAA RVFA+ G+DGA T IA A +E +++RHFPSK L R VL
Sbjct: 3 RKRLLSADRRALILEAAIRVFAEHGFDGAKTHRIAAEAQVSEALIFRHFPSKETLYRSVL 62
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: UPI0019BD282D (TetR/AcrR family transcriptional regulator n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=UPI0019BD282D) HSP 1 Score: 55.1 bits (131), Expect = 2.010e-7 Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 1 RARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVL 180
R R+ + RR ++ AARR FA AGY GASTA IA AA C+E +LY+HF K L E L
Sbjct: 28 RPRMTGSQRRQVILAAARREFARAGYHGASTARIAQAAGCSEPMLYKHFSGKQALFAETL 87
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A1W9I986_9PROT (TetR family transcriptional regulator n=1 Tax=Proteobacteria bacterium SG_bin9 TaxID=1827385 RepID=A0A1W9I986_9PROT) HSP 1 Score: 54.7 bits (130), Expect = 2.980e-7 Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 7 RVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVLA 183
R+PS +RR Q+++AA+R FA GY G +T ++A AA +E +L++HFP+K L E+LA
Sbjct: 5 RLPSDLRREQIMDAAKRCFARHGYAGTTTRSVAAAAGISEGLLFKHFPTKAALYAEILA 63
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A849BU23_9ACTN (TetR/AcrR family transcriptional regulator n=2 Tax=Pseudokineococcus marinus TaxID=351215 RepID=A0A849BU23_9ACTN) HSP 1 Score: 53.1 bits (126), Expect = 1.010e-6 Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 4 ARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSK 156
AR+ A RRAQL+ AA+RVFA AGY G+ AIA+ A + VLYRHFP K
Sbjct: 26 ARLGRADRRAQLLRAAQRVFARAGYHGSGMDAIAERAGITKPVLYRHFPGK 76
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A7H8HM28_9PSEU (TetR/AcrR family transcriptional regulator n=1 Tax=Amycolatopsis sp. Hca4 TaxID=2742131 RepID=A0A7H8HM28_9PSEU) HSP 1 Score: 52.0 bits (123), Expect = 2.210e-6 Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 7 RVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVLAA 186
R+ + RRA ++E A VFA+ GYDGA IA + + VLY HFPSK+ L +EVLAA
Sbjct: 8 RMSAEKRRAVIVENATEVFAERGYDGAPVDEIARRSGISAPVLYDHFPSKLALFQEVLAA 67
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A2N1TH15_9SPIR (HTH tetR-type domain-containing protein n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-1 TaxID=2013832 RepID=A0A2N1TH15_9SPIR) HSP 1 Score: 52.0 bits (123), Expect = 2.930e-6 Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 7 RVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVLA 183
R+ + RR ++IEAA+ +FAD G++G S IA AAD + +LY+HFPSK + E+L+
Sbjct: 6 RINAEERRQRIIEAAKPLFADFGFNGTSIRDIAKAADVSNALLYKHFPSKEAMYEEILS 64
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A511D5P9_9PSEU (TetR family transcriptional regulator n=1 Tax=Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 TaxID=1123024 RepID=A0A511D5P9_9PSEU) HSP 1 Score: 51.2 bits (121), Expect = 4.740e-6 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 4 ARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREVL 180
AR+ RRAQL+ AAR VFAD GY A+ IA+ A ++ VLY+HFP K+ L R +L
Sbjct: 13 ARLSRTARRAQLLVAARDVFADLGYHAAAMDDIAERAGVSKPVLYQHFPGKLELYRALL 71
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A0Q8M6C0_9CAUL (TetR family transcriptional regulator n=1 Tax=Phenylobacterium sp. Root700 TaxID=1736591 RepID=A0A0Q8M6C0_9CAUL) HSP 1 Score: 51.2 bits (121), Expect = 4.860e-6 Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 22 VRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREV 177
+RRA+++EAA R+F GYDGA+ IAD + T LY HFP K +L E+
Sbjct: 20 LRRAEILEAAERIFVAEGYDGATIRKIADEVGVSSTALYMHFPDKSCILLEI 71
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A2W5NXC1_9CAUL (TetR/AcrR family transcriptional regulator n=1 Tax=Phenylobacterium zucineum TaxID=284016 RepID=A0A2W5NXC1_9CAUL) HSP 1 Score: 51.2 bits (121), Expect = 4.860e-6 Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 22 VRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSKIILLREV 177
+RRA+++EAA+R+F GY+GA+ IAD + T LY HFP K +L E+
Sbjct: 21 LRRAEILEAAQRIFVAEGYEGATIRKIADEVGVSSTALYMHFPDKACILHEI 72
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Match: A0A8I0FUT4_9ACTN (TetR/AcrR family transcriptional regulator n=2 Tax=Aeromicrobium tamlense TaxID=375541 RepID=A0A8I0FUT4_9ACTN) HSP 1 Score: 51.2 bits (121), Expect = 5.090e-6 Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 25 RRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPSK 156
RRAQ+IE+ARRVFA++GY T IA A E +LYRHFPSK
Sbjct: 16 RRAQIIESARRVFAESGYAATRTREIAAEAGVNEAMLYRHFPSK 59 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127971.5630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig127971.5630.1 >prot_M-pyrifera_M_contig127971.5630.1 ID=prot_M-pyrifera_M_contig127971.5630.1|Name=mRNA_M-pyrifera_M_contig127971.5630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp RARVPSAVRRAQLIEAARRVFADAGYDGASTAAIADAADCAETVLYRHFPback to top mRNA from alignment at M-pyrifera_M_contig127971:8..202+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig127971.5630.1 ID=mRNA_M-pyrifera_M_contig127971.5630.1|Name=mRNA_M-pyrifera_M_contig127971.5630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig127971:8..202+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig127971:8..202+ >mRNA_M-pyrifera_M_contig127971.5630.1 ID=mRNA_M-pyrifera_M_contig127971.5630.1|Name=mRNA_M-pyrifera_M_contig127971.5630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig127971:8..202+ (Macrocystis pyrifera P11B4 male)back to top |