mRNA_M-pyrifera_M_contig127959.5629.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127959.5629.1
Unique NamemRNA_M-pyrifera_M_contig127959.5629.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A2D6UQ00_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=A0A2D6UQ00_9SPHN)

HSP 1 Score: 67.8 bits (164), Expect = 4.230e-12
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    4 SSDPPGVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEENANKR 198
            SSDPPGVGP LL +  V  ++  S+SSIY    +  FPE+ K+G  S W + E++ WIEE + KR
Sbjct:  161 SSDPPGVGPMLLSIDEVSELIGRSQSSIYEDEKKGVFPERLKLGSSSRWRKDEVLAWIEEQSAKR 225          
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: UPI00145CBF59 (AlpA family transcriptional regulator n=1 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=UPI00145CBF59)

HSP 1 Score: 61.2 bits (147), Expect = 7.960e-11
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEE 183
            +L++LP VK+MV L RSSIY+KI +  FP+Q K+G  S W+E+E+  WI E
Sbjct:    4 RLIRLPQVKSMVGLGRSSIYAKIKRGEFPKQIKLGRSSGWVEAEVQTWISE 54          
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A844YIJ6_9SPHN (Helix-turn-helix domain-containing protein n=1 Tax=Qipengyuania oceanensis TaxID=1463597 RepID=A0A844YIJ6_9SPHN)

HSP 1 Score: 64.7 bits (156), Expect = 8.750e-11
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    4 SSDPPGVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEENANKR 198
            + DPPGVGP LL +  V  ++  S S+IY+ + +  FPE  K+G  + W ++E++ WIEE A KR
Sbjct:  195 AGDPPGVGPLLLTVSEVSELIGRSTSTIYADVKKGAFPEGIKLGSSTRWKKTEVLAWIEEQAGKR 259          
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A8E1WVL4_9PROT (AlpA family transcriptional regulator n=2 Tax=Candidatus Accumulibacter TaxID=327159 RepID=A0A8E1WVL4_9PROT)

HSP 1 Score: 60.8 bits (146), Expect = 1.410e-10
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEE 183
            +L++LP VK MV L RSSIY KI +  FP+Q K+G  S W+E+E+ +WI E
Sbjct:    4 RLIRLPQVKAMVGLGRSSIYDKIKRGEFPKQIKLGRSSGWVEAEVQEWISE 54          
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A1G3JXG2_9SPHN (HTH_17 domain-containing protein n=1 Tax=Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 TaxID=1802169 RepID=A0A1G3JXG2_9SPHN)

HSP 1 Score: 57.4 bits (137), Expect = 2.010e-9
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   19 GVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEENANKR 198
            G+GP+LL L  V ++V   +SS+YS I    FPE  K+G  S W + E++ WIEE A +R
Sbjct:    5 GLGPELLTLADVCDLVRKGKSSVYSMISGGQFPEPIKLGSNSRWAKREVLTWIEEQAARR 64          
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A5J6LC54_9GAMM (AlpA family phage regulatory protein n=1 Tax=Nitrincola iocasae TaxID=2614693 RepID=A0A5J6LC54_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 2.540e-9
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSF-WLESEIVQWIEENANKRQ 201
            KLL+LP V N   LSRSS+Y K+D  +FP   +I   S  W E E+ +WIEE  N+R+
Sbjct:    2 KLLRLPDVLNATGLSRSSLYRKLDDGSFPTSIRISQRSVAWCEEEVQRWIEERINERE 59          
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A011Q1G7_9PROT (Putative transcriptional regulator n=1 Tax=Candidatus Accumulibacter sp. BA-92 TaxID=1454003 RepID=A0A011Q1G7_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 3.220e-9
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEENANKRQ 201
            +L++LP VK MV L RSSIY KI +  FP+Q K+G  S WLE+EI   I E    R+
Sbjct:    4 RLVRLPQVKAMVGLGRSSIYEKIKRGEFPKQIKLGRSSGWLEAEIQAGISEQFQARR 60          
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A1A9MDJ7_9XANT (Uncharacterized protein n=3 Tax=Xanthomonas TaxID=338 RepID=A0A1A9MDJ7_9XANT)

HSP 1 Score: 56.6 bits (135), Expect = 4.060e-9
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    7 SDPPGVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEE 183
            S  P    +LL+LP V + V +S+S++YS+I  KTFP+   +G  S W+ESE+  WI +
Sbjct:    2 STTPTTTQRLLRLPDVLDRVGISKSTLYSRIRDKTFPQPLHLGTSSVWVESEVTDWIND 60          
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A443YYT6_9GAMM (AlpA family transcriptional regulator n=1 Tax=Pseudidiomarina gelatinasegens TaxID=2487740 RepID=A0A443YYT6_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 7.610e-9
Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQ-TKIGGGSFWLESEIVQWIEENANKR 198
            +L++LP VK+M  L RSS+Y  + +  FP+  T IG  S W+E+E+V+WIE+   +R
Sbjct:    2 RLIRLPQVKDMTGLGRSSVYKLMSEGKFPKAVTLIGRASAWVENEVVEWIEDRITER 58          
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: UPI00048B5A50 (AlpA family transcriptional regulator n=1 Tax=Shewanella colwelliana TaxID=23 RepID=UPI00048B5A50)

HSP 1 Score: 55.5 bits (132), Expect = 1.080e-8
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSF-WLESEIVQWIEE 183
            K+L+LPAVK  V LSRSSIY +I Q  FP    +G  +  WLES+I QW++E
Sbjct:    4 KVLRLPAVKGKVGLSRSSIYLRIAQGKFPASISLGDRAVGWLESDIEQWLDE 55          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6UQ00_9SPHN4.230e-1247.69Uncharacterized protein n=1 Tax=Sphingomonadaceae ... [more]
UPI00145CBF597.960e-1152.94AlpA family transcriptional regulator n=1 Tax=Cand... [more]
A0A844YIJ6_9SPHN8.750e-1143.08Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A8E1WVL4_9PROT1.410e-1052.94AlpA family transcriptional regulator n=2 Tax=Cand... [more]
A0A1G3JXG2_9SPHN2.010e-945.00HTH_17 domain-containing protein n=1 Tax=Sphingomo... [more]
A0A5J6LC54_9GAMM2.540e-948.28AlpA family phage regulatory protein n=1 Tax=Nitri... [more]
A0A011Q1G7_9PROT3.220e-950.88Putative transcriptional regulator n=1 Tax=Candida... [more]
A0A1A9MDJ7_9XANT4.060e-942.37Uncharacterized protein n=3 Tax=Xanthomonas TaxID=... [more]
A0A443YYT6_9GAMM7.610e-943.86AlpA family transcriptional regulator n=1 Tax=Pseu... [more]
UPI00048B5A501.080e-853.85AlpA family transcriptional regulator n=1 Tax=Shew... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127959contigM-pyrifera_M_contig127959:242..448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.4
Seed ortholog evalue9.6e-08
Seed eggNOG ortholog1454004.AW11_03710
Preferred namealpA
KEGG koko:K07733
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam Prophage CP4-57 regulatory
EggNOG OGs1NGB9@1224,2VXRR@28216,COG3311@1,COG3311@2
COG Functional cat.K
Best tax levelBetaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.593296-CDS-M-pyrifera_M_contig127959:241..4481622815793.593296-CDS-M-pyrifera_M_contig127959:241..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127959 242..448 -
1692277572.423018-CDS-M-pyrifera_M_contig127959:241..4481692277572.423018-CDS-M-pyrifera_M_contig127959:241..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127959 242..448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127959.5629.1prot_M-pyrifera_M_contig127959.5629.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127959 242..448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127959.5629.1

>prot_M-pyrifera_M_contig127959.5629.1 ID=prot_M-pyrifera_M_contig127959.5629.1|Name=mRNA_M-pyrifera_M_contig127959.5629.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
ISSDPPGVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFW
LESEIVQWIEENANKRQA*
back to top

mRNA from alignment at M-pyrifera_M_contig127959:242..448-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127959.5629.1 ID=mRNA_M-pyrifera_M_contig127959.5629.1|Name=mRNA_M-pyrifera_M_contig127959.5629.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig127959:242..448- (Macrocystis pyrifera P11B4 male)
ATATCCAGCGATCCGCCAGGCGTTGGGCCGAAATTGCTCAAGCTGCCTGC CGTTAAGAATATGGTCAGCCTCAGCAGGTCATCGATATATAGCAAAATTG ACCAGAAAACATTTCCCGAGCAAACAAAAATCGGCGGCGGATCCTTCTGG CTGGAATCCGAAATTGTGCAATGGATCGAGGAAAATGCCAATAAGCGGCA AGCCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127959:242..448-

>mRNA_M-pyrifera_M_contig127959.5629.1 ID=mRNA_M-pyrifera_M_contig127959.5629.1|Name=mRNA_M-pyrifera_M_contig127959.5629.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig127959:242..448- (Macrocystis pyrifera P11B4 male)
ATATCCAGCGATCCGCCAGGCGTTGGGCCGAAATTGCTCAAGCTGCCTGC
CGTTAAGAATATGGTCAGCCTCAGCAGGTCATCGATATATAGCAAAATTG
ACCAGAAAACATTTCCCGAGCAAACAAAAATCGGCGGCGGATCCTTCTGG
CTGGAATCCGAAATTGTGCAATGGATCGAGGAAAATGCCAATAAGCGGCA
AGCCTAAATATCCAGCGATCCGCCAGGCGTTGGGCCGAAATTGCTCAAGC
TGCCTGCCGTTAAGAATATGGTCAGCCTCAGCAGGTCATCGATATATAGC
AAAATTGACCAGAAAACATTTCCCGAGCAAACAAAAATCGGCGGCGGATC
CTTCTGGCTGGAATCCGAAATTGTGCAATGGATCGAGGAAAATGCCAATA
AGCGGCAAGCCTAA
back to top