mRNA_M-pyrifera_M_contig127900.5619.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127900.5619.1
Unique NamemRNA_M-pyrifera_M_contig127900.5619.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: A0A3N2QKV3_9RHOB (Fructose-bisphosphate aldolase n=1 Tax=Histidinibacterium lentulum TaxID=2480588 RepID=A0A3N2QKV3_9RHOB)

HSP 1 Score: 55.8 bits (133), Expect = 4.890e-8
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASI 108
            ASFSRAL EGLSAQQSDAEFDA LGA+IDSI AAS+
Sbjct:  257 ASFSRALTEGLSAQQSDAEFDAALGATIDSIHAASV 292
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: A0A316GQA3_9RHOB (Fructose-bisphosphate aldolase n=1 Tax=Roseicyclus mahoneyensis TaxID=164332 RepID=A0A316GQA3_9RHOB)

HSP 1 Score: 55.8 bits (133), Expect = 4.920e-8
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASIT 111
            ASFSRAL EGLSAQQSDAEF+ +LGA+ID+IRAASIT
Sbjct:  260 ASFSRALTEGLSAQQSDAEFNVSLGAAIDAIRAASIT 296
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: A0A411Z2M1_9RHOB (Fructose-bisphosphate aldolase n=4 Tax=Tabrizicola TaxID=1443919 RepID=A0A411Z2M1_9RHOB)

HSP 1 Score: 55.8 bits (133), Expect = 4.930e-8
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASI 108
            ASFSRAL EGLSAQQSDAEFDA LGA+IDSI AAS+
Sbjct:  260 ASFSRALTEGLSAQQSDAEFDAALGAAIDSIHAASV 295
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: UPI0014923A51 (fructose bisphosphate aldolase n=1 Tax=unclassified Roseobacter TaxID=196798 RepID=UPI0014923A51)

HSP 1 Score: 53.9 bits (128), Expect = 2.410e-7
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASIT 111
            ASFSRAL EGLSAQQSDAEFDA + ASIDSI AAS T
Sbjct:  259 ASFSRALTEGLSAQQSDAEFDAQIAASIDSIHAASTT 295
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: A0A086Y1D1_9RHOB (Fructose-bisphosphate aldolase n=1 Tax=Paenirhodobacter enshiensis TaxID=1105367 RepID=A0A086Y1D1_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 2.420e-7
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASI 108
            ASFSRAL EGLSA+QSDAEFDA LGA+IDSI AAS+
Sbjct:  260 ASFSRALTEGLSAKQSDAEFDAMLGAAIDSIHAASV 295
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: A0A421BLS0_9RHOB (Fructose-bisphosphate aldolase n=4 Tax=root TaxID=1 RepID=A0A421BLS0_9RHOB)

HSP 1 Score: 53.5 bits (127), Expect = 3.320e-7
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASI 108
            ASFSRAL EGLSAQQSDAEFDA LGA+IDSI  ASI
Sbjct:  260 ASFSRALTEGLSAQQSDAEFDAALGAAIDSIYKASI 295
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: A0A074K4Q7_9RHOB (Fructose-bisphosphate aldolase n=12 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A074K4Q7_9RHOB)

HSP 1 Score: 53.5 bits (127), Expect = 3.330e-7
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASI 108
            ASFSRAL EGLSAQQSDAEFDA LG +IDSI AAS+
Sbjct:  260 ASFSRALTEGLSAQQSDAEFDAMLGEAIDSIHAASV 295
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: A0A6M0QQ96_9RHOB (Fructose-bisphosphate aldolase n=1 Tax=Tabrizicola oligotrophica TaxID=2710650 RepID=A0A6M0QQ96_9RHOB)

HSP 1 Score: 53.5 bits (127), Expect = 3.330e-7
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASI 108
            ASFSRAL EGLSAQQSDAEFDA LGA+I SI AAS+
Sbjct:  260 ASFSRALTEGLSAQQSDAEFDAALGAAISSIHAASV 295
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: UPI0020225DE9 (fructose bisphosphate aldolase n=1 Tax=Phaeovulum sp. NW3 TaxID=2934933 RepID=UPI0020225DE9)

HSP 1 Score: 53.5 bits (127), Expect = 3.330e-7
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASI 108
            ASFSRAL EGLSAQQ+DAEFDA LGA+ID+I AAS+
Sbjct:  260 ASFSRALTEGLSAQQTDAEFDAVLGAAIDAIHAASV 295
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BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Match: A8LQM5_DINSH (Fructose-bisphosphate aldolase n=1 Tax=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) TaxID=398580 RepID=A8LQM5_DINSH)

HSP 1 Score: 53.1 bits (126), Expect = 4.550e-7
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASI 108
            ASFSRAL EGLSAQQSDAEF+AT+ A+IDSI AASI
Sbjct:  257 ASFSRALTEGLSAQQSDAEFNATIAATIDSIHAASI 292
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127900.5619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N2QKV3_9RHOB4.890e-886.11Fructose-bisphosphate aldolase n=1 Tax=Histidiniba... [more]
A0A316GQA3_9RHOB4.920e-883.78Fructose-bisphosphate aldolase n=1 Tax=Roseicyclus... [more]
A0A411Z2M1_9RHOB4.930e-886.11Fructose-bisphosphate aldolase n=4 Tax=Tabrizicola... [more]
UPI0014923A512.410e-783.78fructose bisphosphate aldolase n=1 Tax=unclassifie... [more]
A0A086Y1D1_9RHOB2.420e-783.33Fructose-bisphosphate aldolase n=1 Tax=Paenirhodob... [more]
A0A421BLS0_9RHOB3.320e-786.11Fructose-bisphosphate aldolase n=4 Tax=root TaxID=... [more]
A0A074K4Q7_9RHOB3.330e-783.33Fructose-bisphosphate aldolase n=12 Tax=Rhodobacte... [more]
A0A6M0QQ96_9RHOB3.330e-783.33Fructose-bisphosphate aldolase n=1 Tax=Tabrizicola... [more]
UPI0020225DE93.330e-780.56fructose bisphosphate aldolase n=1 Tax=Phaeovulum ... [more]
A8LQM5_DINSH4.550e-783.33Fructose-bisphosphate aldolase n=1 Tax=Dinoroseoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127900contigM-pyrifera_M_contig127900:2..115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.9897044-CDS-M-pyrifera_M_contig127900:1..1151622815792.9897044-CDS-M-pyrifera_M_contig127900:1..115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127900 2..115 +
1692277572.0832672-CDS-M-pyrifera_M_contig127900:1..1151692277572.0832672-CDS-M-pyrifera_M_contig127900:1..115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127900 2..115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127900.5619.1prot_M-pyrifera_M_contig127900.5619.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127900 2..115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127900.5619.1

>prot_M-pyrifera_M_contig127900.5619.1 ID=prot_M-pyrifera_M_contig127900.5619.1|Name=mRNA_M-pyrifera_M_contig127900.5619.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
ASFSRALVEGLSAQQSDAEFDATLGASIDSIRAASIT*
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mRNA from alignment at M-pyrifera_M_contig127900:2..115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127900.5619.1 ID=mRNA_M-pyrifera_M_contig127900.5619.1|Name=mRNA_M-pyrifera_M_contig127900.5619.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig127900:2..115+ (Macrocystis pyrifera P11B4 male)
GCGAGCTTTTCCCGCGCGCTCGTCGAAGGCCTCAGCGCGCAACAATCCGA
TGCGGAATTCGACGCCACACTCGGCGCCTCGATCGACAGCATCCGGGCCG
CGTCCATCACCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127900:2..115+

>mRNA_M-pyrifera_M_contig127900.5619.1 ID=mRNA_M-pyrifera_M_contig127900.5619.1|Name=mRNA_M-pyrifera_M_contig127900.5619.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig127900:2..115+ (Macrocystis pyrifera P11B4 male)
GCGAGCTTTTCCCGCGCGCTCGTCGAAGGCCTCAGCGCGCAACAATCCGA
TGCGGAATTCGACGCCACACTCGGCGCCTCGATCGACAGCATCCGGGCCG
CGTCCATCACCTGAGCGAGCTTTTCCCGCGCGCTCGTCGAAGGCCTCAGC
GCGCAACAATCCGATGCGGAATTCGACGCCACACTCGGCGCCTCGATCGA
CAGCATCCGGGCCGCGTCCATCACCTGA
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