mRNA_M-pyrifera_M_contig127895.5617.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127895.5617.1
Unique NamemRNA_M-pyrifera_M_contig127895.5617.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: UPI000D6A1C85 (omega-amidase NIT2 isoform X2 n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A1C85)

HSP 1 Score: 144 bits (362), Expect = 1.780e-40
Identity = 68/113 (60.18%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:   25 AEECP--SYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            AE+ P  S Q +S +A+E G+ LIGGS+PE  + G+LYNTC +FG DG+++  YRK+HLFDI+VPGKI F+ESETLSAG++F V DT YCKIG+ ICYD+RFPE+A+ Y + G
Sbjct:   38 AEKIPGDSTQKLSEIAKECGIYLIGGSIPEE-DAGKLYNTCTAFGPDGTMLAKYRKIHLFDINVPGKIRFQESETLSAGDRFSVFDTPYCKIGIGICYDIRFPELAQIYTQKG 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: A0A8C5WPM6_LATLA (Nitrilase family member 2 n=2 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5WPM6_LATLA)

HSP 1 Score: 140 bits (354), Expect = 3.080e-39
Identity = 67/113 (59.29%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:   25 AEECPS--YQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            AE+ P    Q +S +A+E G+ LIGGS+PE  + G+LYNTC +FG DGS++  YRK+HLFDI+VPGKI F+ESETLS G++F V DT YCKIG+ ICYD+RFPE+A+ Y + G
Sbjct:   41 AEKIPGDCTQKLSDIAKECGIYLIGGSIPED-DAGKLYNTCTAFGPDGSMLAKYRKIHLFDINVPGKIRFQESETLSPGDRFSVFDTPYCKIGIGICYDIRFPELAQIYTQKG 152
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: UPI001402716C (omega-amidase NIT2 isoform X1 n=3 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001402716C)

HSP 1 Score: 142 bits (357), Expect = 4.000e-39
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 GRRCLRAAAEECP--SYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            G +  R  AE  P  S + +S  A+E GV LIGGS+PE+ ++G++YN+C  F  DGS++  YRK+HLFDIDVPGKITF+ESETLS GNQ C  DT YCK+G+ ICYD+RF E+A+ Y + G
Sbjct:   83 GTKYFRENAERIPGESTEVLSETAKEFGVYLIGGSIPEK-DNGKIYNSCTVFAPDGSMLLKYRKIHLFDIDVPGKITFQESETLSPGNQLCTFDTPYCKVGIGICYDLRFAELAQIYTQKG 202
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: UPI001C4D7281 (omega-amidase NIT2 isoform X1 n=2 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4D7281)

HSP 1 Score: 141 bits (355), Expect = 7.080e-39
Identity = 68/113 (60.18%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:   25 AEECP--SYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            AE+ P  S Q +S  A+E G+ +IGGS+PE  EDG+LYNTC  FG DG+++  +RK+HLFDIDVPGKI F+ESETL  GN+F V DT YCKIGL ICYD+RF E+A+ Y + G
Sbjct:   89 AEKIPGESTQKLSEAAKECGIFVIGGSIPEE-EDGKLYNTCTVFGPDGAMLAKHRKLHLFDIDVPGKIRFQESETLCPGNKFSVFDTPYCKIGLGICYDIRFAELAQIYTQKG 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: UPI000CEF9259 (omega-amidase NIT2 isoform X2 n=1 Tax=Pongo abelii TaxID=9601 RepID=UPI000CEF9259)

HSP 1 Score: 139 bits (350), Expect = 8.110e-39
Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:   25 AEECP--SYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            AE+ P  S Q +S +A+E  + LIGGS+PE  + G+LYNTC  FG DG+L+  YRK+HLFDIDVPGKITF+ES+TLS G+ FC  DT YC++GL ICYD+RF E+A+ Y + G
Sbjct:   58 AEKIPGESTQKLSEVAKECSIYLIGGSIPEE-DAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFCTFDTPYCRVGLGICYDMRFAELAQIYAQRG 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: UPI001425A1B0 (omega-amidase NIT2-like isoform X1 n=3 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A1B0)

HSP 1 Score: 141 bits (356), Expect = 8.650e-39
Identity = 67/113 (59.29%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:   25 AEECP--SYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            AE  P  + QA++S A+E+ V L+GGS+PER E+G+ +NTC+ F  DGSL+G YRKMHLFDI VPG+ITFKES+ LSAGN F   DT +C++G+ ICYD+RFPEIA+ Y + G
Sbjct:  114 AERIPGETSQALASAAKENKVFLVGGSIPER-ENGKFFNTCMVFSPDGSLLGKYRKMHLFDISVPGRITFKESDVLSAGNSFLTFDTPFCRVGVGICYDMRFPEIAQIYCKQG 225
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: B3RTR0_TRIAD (CN hydrolase domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RTR0_TRIAD)

HSP 1 Score: 140 bits (352), Expect = 1.020e-38
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 GRRCLRAAAEECP--SYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            G +  +A +E  P  + Q +S +A+E+ V L+GGS+PE   DG+L+NTC  F  +GS+I  YRKMHLFDIDVPGKITF+ES+ LS GN+F   DT YCK+GL ICYDVRFPE+A+ Y + G
Sbjct:   51 GTKFFKAYSETVPGTTTQVLSDIAKENKVYLVGGSIPEVA-DGKLFNTCTVFDPEGSMIAKYRKMHLFDIDVPGKITFRESDVLSPGNEFATFDTPYCKVGLGICYDVRFPELAQAYCKRG 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: A0A835ZEK3_9STRA (Putative carbon-nitrogen hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK3_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.500e-38
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:   31 ECPSYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            E PS  A+S  A+     +IGGS+PERG+D R+YNTC+ FG DG ++G +RKMHLFDI+VPGKITF+ES+TLSAGN   V+DT  CK+G+ ICYD+RFPE++   + AG
Sbjct:   75 EHPSTFALSQAAKRFSRHIIGGSIPERGDDDRVYNTCVVFGPDGGILGKHRKMHLFDINVPGKITFRESDTLSAGNSVTVIDTPLCKLGVGICYDLRFPELSMLMRAAG 183
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: A0A058ZBS7_FONAL (Nitrilase n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZBS7_FONAL)

HSP 1 Score: 140 bits (352), Expect = 1.570e-38
Identity = 60/107 (56.07%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:   37 PSYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            P++ A+S  A+EH + LIGG++PER  DG++YNT + FG +G+++ T+RK+HLFDIDVPG++TFKES+TLSAG++  V DT + KIGLAICYD+RFP +A + +  G
Sbjct:   69 PTWSALSEAAKEHSIYLIGGTIPERSADGKIYNTAMVFGPEGNMLTTHRKIHLFDIDVPGRVTFKESDTLSAGDKPTVFDTAFGKIGLAICYDIRFPRLAEYMRHQG 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Match: A0A6P8R974_GEOSA (omega-amidase NIT2 n=3 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8R974_GEOSA)

HSP 1 Score: 139 bits (350), Expect = 2.240e-38
Identity = 69/113 (61.06%), Postives = 84/113 (74.34%), Query Frame = 1 
Query:   25 AEECP--SYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSFGADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGLAICYDVRFPEIARHYQEAG 357
            AE  P  S QA+S +A+E G+ LIGGS+PE+  + RLYNTC  FG DGSL+  YRK+HLFDIDVPGKI F+ESETLS GN F V DT YC++G+ ICYD+RF E A+ Y   G
Sbjct:   58 AESIPGESTQALSEVAKECGIYLIGGSIPEKDGE-RLYNTCTVFGPDGSLLVKYRKIHLFDIDVPGKIRFQESETLSPGNSFSVFDTPYCRVGVGICYDIRFAEFAQIYTRRG 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127895.5617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000D6A1C851.780e-4060.18omega-amidase NIT2 isoform X2 n=1 Tax=Python bivit... [more]
A0A8C5WPM6_LATLA3.080e-3959.29Nitrilase family member 2 n=2 Tax=Laticauda latica... [more]
UPI001402716C4.000e-3956.20omega-amidase NIT2 isoform X1 n=3 Tax=Amblyraja ra... [more]
UPI001C4D72817.080e-3960.18omega-amidase NIT2 isoform X1 n=2 Tax=Sceloporus u... [more]
UPI000CEF92598.110e-3958.41omega-amidase NIT2 isoform X2 n=1 Tax=Pongo abelii... [more]
UPI001425A1B08.650e-3959.29omega-amidase NIT2-like isoform X1 n=3 Tax=Anneiss... [more]
B3RTR0_TRIAD1.020e-3856.20CN hydrolase domain-containing protein n=2 Tax=Tri... [more]
A0A835ZEK3_9STRA1.500e-3858.72Putative carbon-nitrogen hydrolase n=1 Tax=Tribone... [more]
A0A058ZBS7_FONAL1.570e-3856.07Nitrilase n=1 Tax=Fonticula alba TaxID=691883 RepI... [more]
A0A6P8R974_GEOSA2.240e-3861.06omega-amidase NIT2 n=3 Tax=Gymnophiona TaxID=8445 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127895contigM-pyrifera_M_contig127895:3..425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score144.4
Seed ortholog evalue3.3e-32
Seed eggNOG ortholog176946.XP_007427519.1
Preferred nameNIT2
KEGG rclassRC00010
KEGG koko:K13101,ko:K13566
KEGG ReactionR00269,R00348
KEGG Pathwayko00250,map00250
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006107,GO:0006520,GO:0006528,GO:0006541,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009064,GO:0009066,GO:0009987,GO:0012505,GO:0015630,GO:0016192,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032787,GO:0032940,GO:0034641,GO:0034774,GO:0035580,GO:0036230,GO:0042119,GO:0042581,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050152,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0070820,GO:0071704,GO:0097708,GO:0099503,GO:1901564,GO:1901605,GO:1904724
EggNOG free text desc.Nitrilase family, member 2
EggNOG OGs38TQE@33154,3B9AV@33208,3CSJF@33213,48AWD@7711,49376@7742,COG0388@1,KOG0806@2759
EC3.5.1.3
COG Functional cat.E
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.887852-CDS-M-pyrifera_M_contig127895:2..791622815792.887852-CDS-M-pyrifera_M_contig127895:2..79Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127895 3..79 -
1692277572.0166433-CDS-M-pyrifera_M_contig127895:2..791692277572.0166433-CDS-M-pyrifera_M_contig127895:2..79Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127895 3..79 -
1622815792.9003844-CDS-M-pyrifera_M_contig127895:145..4251622815792.9003844-CDS-M-pyrifera_M_contig127895:145..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127895 146..425 -
1692277572.0391455-CDS-M-pyrifera_M_contig127895:145..4251692277572.0391455-CDS-M-pyrifera_M_contig127895:145..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127895 146..425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127895.5617.1prot_M-pyrifera_M_contig127895.5617.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127895 3..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127895.5617.1

>prot_M-pyrifera_M_contig127895.5617.1 ID=prot_M-pyrifera_M_contig127895.5617.1|Name=mRNA_M-pyrifera_M_contig127895.5617.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
GRRCLRAAAEECPSYQAMSSMAREHGVVLIGGSVPERGEDGRLYNTCLSF
GADGSLIGTYRKMHLFDIDVPGKITFKESETLSAGNQFCVLDTKYCKIGL
AICYDVRFPEIARHYQEAG
back to top

mRNA from alignment at M-pyrifera_M_contig127895:3..425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127895.5617.1 ID=mRNA_M-pyrifera_M_contig127895.5617.1|Name=mRNA_M-pyrifera_M_contig127895.5617.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig127895:3..425- (Macrocystis pyrifera P11B4 male)
GGGCGGCGATGCTTACGCGCGGCAGCGGAGGAGTGCCCCTCCTACCAGGC
CATGTCCTCGATGGCACGCGAGCATGGCGTTGTCCTCATTGGCGGCTCAG
TGCCGGAGCGAGGTGAGGACGGCCGTCTCTACAACACCTGCCTCAGCTTC
GGCGCCGACGGCAGCCTCATCGGCACCTACCGCAAGATGCACCTCTTCGA
CATCGACGTCCCCGGCAAGATCACCTTCAAGGAGTCTGAGACCCTCTCTG
CAGGCAACCAGTTTTGCGTGCTGGATACCAGTAAGCTCTCTCTCTCTCTC
TCTCTTCCCCTTCGCTTGGCCCACGCTCACCGCTGACGTCCACCAGAGTA
CTGCAAGATCGGCCTCGCAATTTGCTACGATGTCCGCTTCCCCGAGATTG
CACGTCACTACCAAGAAGCAGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127895:3..425-

>mRNA_M-pyrifera_M_contig127895.5617.1 ID=mRNA_M-pyrifera_M_contig127895.5617.1|Name=mRNA_M-pyrifera_M_contig127895.5617.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig127895:3..425- (Macrocystis pyrifera P11B4 male)
GGGCGGCGATGCTTACGCGCGGCAGCGGAGGAGTGCCCCTCCTACCAGGC
CATGTCCTCGATGGCACGCGAGCATGGCGTTGTCCTCATTGGCGGCTCAG
TGCCGGAGCGAGGTGAGGACGGCCGTCTCTACAACACCTGCCTCAGCTTC
GGCGCCGACGGCAGCCTCATCGGCACCTACCGCAAGATGCACCTCTTCGA
CATCGACGTCCCCGGCAAGATCACCTTCAAGGAGTCTGAGACCCTCTCTG
CAGGCAACCAGTTTTGCGTGCTGGATACCAGGGCGGCGATGCTTACGCGC
GGCAGCGGAGGAGTGCCCCTCCTACCAGGCCATGTCCTCGATGGCACGCG
AGCATGGCGTTGTCCTCATTGGCGGCTCAGTGCCGGAGCGAGGTGAGGAC
GGCCGTCTCTACAACACCTGCCTCAGCTTCGGCGCCGACGGCAGCCTCAT
CGGCACCTACCGCAAGATGCACCTCTTCGACATCGACGTCCCCGGCAAGA
TCACCTTCAAGGAGTCTGAGACCCTCTCTGCAGGCAACCAGTTTTGCGTG
CTGGATACCAAGTACTGCAAGATCGGCCTCGCAATTTGCTACGATGTCCG
CTTCCCCGAGATTGCACGTCACTACCAAGAAGCAGGCAGTACTGCAAGAT
CGGCCTCGCAATTTGCTACGATGTCCGCTTCCCCGAGATTGCACGTCACT
ACCAAGAAGCAGGC
back to top