mRNA_M-pyrifera_M_contig12788.5615.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12788.5615.1
Unique NamemRNA_M-pyrifera_M_contig12788.5615.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: D7FPS0_ECTSI (Myosin heavy chain, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS0_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 2.440e-64
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1
Query:    1 MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEILGG 324
            M RVREEHSRLQGVV SLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVI+AENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEILGG
Sbjct:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEILGG 108          
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: A0A835Z8J0_9STRA (Putative myosin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J0_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.080e-47
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    1 MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEILG 321
            M RVREEH+ +Q V+ +LN KIS VL+KQEGDFLAAYRAHMYTVQKELQ+LRQRV+DAE  LQ+NDKVQ+LED C+WYR+EALRLDSFN+AMKKDLK M  K+ +LG
Sbjct:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKVAVLG 107          
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: A0A7S2XXS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXS8_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.710e-43
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 1
Query:   52 LNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEIL 318
            LN KIS VL+KQE DFLAAYRAHMY VQKELQ LRQR +DAEN LQKNDK+QKLE+EC+WYRKEALRLDSFNTAMKKDLKYMK KLEIL
Sbjct:    4 LNDKISGVLSKQESDFLAAYRAHMYNVQKELQALRQRAVDAENALQKNDKIQKLEEECEWYRKEALRLDSFNTAMKKDLKYMKEKLEIL 92          
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: A0A3F2RK62_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RK62_9STRA)

HSP 1 Score: 126 bits (316), Expect = 7.710e-35
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEIL 318
            MA VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMYTVQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:    1 MAVVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYTVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTTMTKDLKYMKENLEAI 106          
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: A0A8J5J7K0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J7K0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.760e-32
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    1 MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMK 300
            MA VR++H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKYMK
Sbjct:   45 MAIVRQKHAQLHDVVGSLSEKISSVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTTMTKDLKYMK 144          
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: A0A6A3F344_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3F344_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.960e-32
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEIL 318
            MA VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:   42 MALVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTIMTKDLKYMKENLEAI 147          
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: A0A662X445_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X445_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.200e-32
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEIL 318
            MA VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMYTVQKEL  +R+++   E V  K +K++K+EDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:   45 MALVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYTVQKELHEMREKIHRNETVENKTEKIKKIEDERDWYRKEALRLDAFTTTMTKDLKYMKENLEAI 150          
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: A0A225W5V9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W5V9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.900e-32
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEIL 318
            MA VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++KLEDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:   42 MAMVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKLEDERDWYRKEALRLDAFTTTMTKDLKYMKENLEAI 147          
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: A0A329RSS2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RSS2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 9.650e-32
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKY 294
            MA VR++H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKY
Sbjct:    1 MAIVRQKHAQLHDVVGSLSEKISSVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTKMTKDLKY 98          
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Match: A0A6A3TYV6_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TYV6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.480e-31
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEIL 318
            MA VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:   42 MALVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTIMTKDLKYMKENLEAI 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12788.5615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPS0_ECTSI2.440e-6497.22Myosin heavy chain, putative n=1 Tax=Ectocarpus si... [more]
A0A835Z8J0_9STRA4.080e-4774.77Putative myosin heavy chain n=1 Tax=Tribonema minu... [more]
A0A7S2XXS8_9STRA1.710e-4385.39Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3F2RK62_9STRA7.710e-3564.15Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8J5J7K0_9STRA1.760e-3264.00Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A6A3F344_9STRA1.960e-3263.21Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A662X445_9STRA5.200e-3264.15Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225W5V9_9STRA5.900e-3264.15Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A329RSS2_9STRA9.650e-3263.27Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A6A3TYV6_9STRA2.480e-3163.21Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12788contigM-pyrifera_M_contig12788:5970..7835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.1
Seed ortholog evalue8.4e-51
Seed eggNOG ortholog2880.D7FPS0
Hectar predicted targeting categoryother localisation
EggNOG OGs29GIY@1,2RPR6@2759
Ec32 ortholog descriptionmyosin heavy chain, putative
Ec32 orthologEc-20_001120.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.7835422-CDS-M-pyrifera_M_contig12788:5969..61041622815792.7835422-CDS-M-pyrifera_M_contig12788:5969..6104Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12788 5970..6104 -
1692277571.9533434-CDS-M-pyrifera_M_contig12788:5969..61041692277571.9533434-CDS-M-pyrifera_M_contig12788:5969..6104Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12788 5970..6104 -
1622815792.79755-CDS-M-pyrifera_M_contig12788:7646..78351622815792.79755-CDS-M-pyrifera_M_contig12788:7646..7835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12788 7647..7835 -
1692277571.9669251-CDS-M-pyrifera_M_contig12788:7646..78351692277571.9669251-CDS-M-pyrifera_M_contig12788:7646..7835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12788 7647..7835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12788.5615.1prot_M-pyrifera_M_contig12788.5615.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12788 5970..7835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12788.5615.1

>prot_M-pyrifera_M_contig12788.5615.1 ID=prot_M-pyrifera_M_contig12788.5615.1|Name=mRNA_M-pyrifera_M_contig12788.5615.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MARVREEHSRLQGVVFSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQT
LRQRVIDAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMK
GKLEILGG
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mRNA from alignment at M-pyrifera_M_contig12788:5970..7835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12788.5615.1 ID=mRNA_M-pyrifera_M_contig12788.5615.1|Name=mRNA_M-pyrifera_M_contig12788.5615.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at M-pyrifera_M_contig12788:5970..7835- (Macrocystis pyrifera P11B4 male)
ATGGCTAGGGTTCGCGAGGAACATTCGCGTCTTCAAGGGGTCGTGTTCTC CCTCAACAAGAAAATTTCCCAAGTGCTGGCGAAGCAAGAAGGCGACTTCC TGGCAGCGTACAGAGCACACATGTACACTGTGCAAAAAGAGCTGCAAACT CTACGTCAACGTGTGATCGACGCAGAGAATGTCCTTCAGGTACGATTTAC GTACAGTGGGTGTTGACTACAGTGCGCGTAGTACCTTGGTATCGTAAGTA CTACTAAAAAAACACCTCTACGAGAGAGATATATGCTTCGTACGTATAGA ATTAATTCTTCCACACCAAGCAGACTATCCGACCCTAACACTTGTACTAT TAATATTTTACTGTATAGAATAATACTGACAGACTGACTCTGGTTTGTTG AAGGATCATGCTCAATTGCTCGATACAGCTCGAGCGGATAATTTGAACGC CCTTGGTTTTGACTATTCGTATATCCTTACTCGACTCGTGTCATGCTGGA ATTTCATTCTCTGTACCTGGTATAATACTCGTATTGCGTACTTCAATTCG GGCCCGGTTGCGTTTTATGAACGACTCGTATTAATAGTAACATGACTCGT CGTAGTCGTCGACGTACACTTCACTGCAGTACAAGGTATTTAATACTACT GTGACTGAGGGCTGCTTTTGTTGTGGCTACGTACAGAGTATGTGTAGAGT AGATATGATATGAAAGCAGCGGGCAAACACAAACTTGTGTTCTACGTGGC ACAGAATATCCAAGCATACATACTGCCAGACACAGTCGACACAGCAAGAA GGGTAGCGTGTCGACACCACCGGGTCTTGGGACGGCAACTGGCAATAAGC GATAGCAATCTGTAGTTGCCAACCAACATACATAATTAGTACTGCAGAGC TCCTTTTAGGTGTTGCGCTGTTGCGCCAGCGCAACATTCGTCGCGAAATA TTGCGCGATTAGAACTGCGGAACTACTACTACGGGGGACCACAGTAAATA GGACCTACGATAGACACAGAAACATTTATATTTCCATATTTTTAATGACA ATATATGGTCCTATTTACTATGATCCCCCGAAATAGGCATAAAACTGTGT TGCGGAGCCTGTTACGCCGCAGGCGAAAAACAACTGGGGGTATTTTTCTT TGTCGCAGGCTCGAAAAGATTTGAGGCTGTCTCGCCGCAGTAGTGTGCAA ATTTACAACTATTACTTACAACTGTATTTGTCATTCTGAGACAAACAACT GTAAATAGTACGTTTACCCACATATCGATAAGGGATACGTTTTGGCTCTC TAAAAAATACCATCATTATTCATATTTGAAGGGTATTTTCCGGCGTTTTC AACGTACACCTGGTATATCGCAAAAAATTACCGCCGGTGCCCCCTGAGCG GCGATCACCCTCCGGCGATCCTCCGGGGGGGGCTGCCGGGTGCGCAACAC GTCTCCGGCGCGCGCCGGCGGCCTATAAGGAGGTCTGATGTACTGCTGTA GTTTACCCAATTATTTGTTGGTCGTCGCAGGCTTCTACTTGAACTACGAG TGTGATACCAGGTACCAGGTACGCACTAACTCATGGATCGGATACTATAC TGTTACCTTGAGGTTGAGATGTATCAGTTCTTCTACAAGTATGTGACACA ATTTCCATATCAACTTTGTAGCTACTGTACTCGCGGCACCCGATCATTTC CATAGACTGTGCACCCGTAAAATGTTTACAGAAAAATGACAAGGTGCAAA AACTTGAGGACGAATGCGATTGGTACCGAAAGGAAGCATTGCGGCTGGAC AGCTTCAATACGGCCATGAAGAAAGATCTCAAGTACATGAAGGGCAAGCT GGAAATTCTCGGTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12788:5970..7835-

>mRNA_M-pyrifera_M_contig12788.5615.1 ID=mRNA_M-pyrifera_M_contig12788.5615.1|Name=mRNA_M-pyrifera_M_contig12788.5615.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig12788:5970..7835- (Macrocystis pyrifera P11B4 male)
ATGGCTAGGGTTCGCGAGGAACATTCGCGTCTTCAAGGGGTCGTGTTCTC
CCTCAACAAGAAAATTTCCCAAGTGCTGGCGAAGCAAGAAGGCGACTTCC
TGGCAGCGTACAGAGCACACATGTACACTGTGCAAAAAGAGCTGCAAACT
CTACGTCAACGTGTGATCGACGCAGAGAATGTCCTTCAGATGGCTAGGGT
TCGCGAGGAACATTCGCGTCTTCAAGGGGTCGTGTTCTCCCTCAACAAGA
AAATTTCCCAAGTGCTGGCGAAGCAAGAAGGCGACTTCCTGGCAGCGTAC
AGAGCACACATGTACACTGTGCAAAAAGAGCTGCAAACTCTACGTCAACG
TGTGATCGACGCAGAGAATGTCCTTCAGAAAAATGACAAGGTGCAAAAAC
TTGAGGACGAATGCGATTGGTACCGAAAGGAAGCATTGCGGCTGGACAGC
TTCAATACGGCCATGAAGAAAGATCTCAAGTACATGAAGGGCAAGCTGGA
AATTCTCGGTGGGAAAAATGACAAGGTGCAAAAACTTGAGGACGAATGCG
ATTGGTACCGAAAGGAAGCATTGCGGCTGGACAGCTTCAATACGGCCATG
AAGAAAGATCTCAAGTACATGAAGGGCAAGCTGGAAATTCTCGGTGGG
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